Non-Coding RNA Search

Ss1.1-Lym1-jns85_E02.f.5

Sequence:


               
               GCCAGTGTCTGGGGCTCCCCTGCGCTTCTGGTTTTTCTGTTGGGGATTTGTAGGTTCTCT
TCCCTGCTCCCTCTCTCCTTCCTCCCCAGCTTCTGCAGCCATGCACATCAGTGTCGTTTG
GATGTTTTGGCAACTCAAGGGCCTTGGAATGATCTTGAACTTTGCTTTCAGCTGGGGTTC
TGAGTCCCTGCAGGCTTTGAGGGTTGTATCTCTCCGGTGCCCTTACAGCTGCCACTTCTA
CCTGGCATGCTCTTCTGAGGCCCCCTCCCAGTCTGACCCAAGAGCTGGGATCAGGAGCTA
AGCCCCAGGGGTGTGTGTGTGTGCGGGGGTGTGTGTGTGTGCGCGTGCGTGTGCACTTTT
GCACTTGGCCTTGGGACCATGTACCCTCTGGCGCCCCAGCACTACTGGGAGCCTCAGGAG
GGACTGCCGGATTTCTACTCTTATCCCTTTCACTCCCCACATCACAGAGAAAAACGCATT
CCCCTTCTGTTTGTCTCTCCTGGCCCTGCAGAGGGCAGACTGTGCTCATGTCACTAGGGT
CCAAATATAGAGGGTGCCGGGGCAGAGGGGCACGCAGCTCCCTGAGGGGTCTGCCTGGCC
CAGGTTCCAGTGAATAAAGTTCTGTTACAGCTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGTGTCTGGGGCTCCCCTGCGCTTCTGGTTTTTCTGTTGGGGATTTGTAGGTTCTCT
TCCCTGCTCCCTCTCTCCTTCCTCCCCAGCTTCTGCAGCCATGCACATCAGTGTCGTTTG
GATGTTTTGGCAACTCAAGGGCCTTGGAATGATCTTGAACTTTGCTTTCAGCTGGGGTTC
TGAGTCCCTGCAGGCTTTGAGGGTTGTATCTCTCCGGTGCCCTTACAGCTGCCACTTCTA
CCTGGCATGCTCTTCTGAGGCCCCCTCCCAGTCTGACCCAAGAGCTGGGATCAGGAGCTA
AGCCCCAGGGGTGTGTGTGTGTGCGGGGGTGTGTGTGTGTGCGCGTGCGTGTGCACTTTT
GCACTTGGCCTTGGGACCATGTACCCTCTGGCGCCCCAGCACTACTGGGAGCCTCAGGAG
GGACTGCCGGATTTCTACTCTTATCCCTTTCACTCCCCACATCACAGAGAAAAACGCATT
CCCCTTCTGTTTGTCTCTCCTGGCCCTGCAGAGGGCAGACTGTGCTCATGTCACTAGGGT
CCAAATATAGAGGGTGCCGGGGCAGAGGGGCACGCAGCTCCCTGAGGGGTCTGCCTGGCC
CAGGTTCCAGTGAATAAAGTTCTGTTACAGCTCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               122-234, - strand, RNAz p=0.928149
               

               
               376-492, - strand, RNAz p=0.936772

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-234, - strand, RNAz p=0.928149
               

               
               376-492, - strand, RNAz p=0.936772

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               20-323, gnl|bosTau2|chr15 (14422463-14422764)
               

               
               20-323, gnl|Hg17|chr11 (118712661-118712954)
               

               
               20-323, gnl|Mm7|chr9 (44045687-44045390)
               


               
               337-633, gnl|bosTau2|chr15 (14422750-14423049)
               

               
               337-633, gnl|Hg17|chr11 (118712949-118713229)
               

               
               337-633, gnl|Mm7|chr9 (44045399-44045129)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-323, gnl|bosTau2|chr15 (14422463-14422764)
               

               
               20-323, gnl|Hg17|chr11 (118712661-118712954)
               

               
               20-323, gnl|Mm7|chr9 (44045687-44045390)
               


               
               337-633, gnl|bosTau2|chr15 (14422750-14423049)
               

               
               337-633, gnl|Hg17|chr11 (118712949-118713229)
               

               
               337-633, gnl|Mm7|chr9 (44045399-44045129)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cly (0.241284)
               

               
               col (0.195008)
               

               
               cli (0.152812)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               cli (0.152812)

	122-234, - strand, RNAz p=0.928149
	376-492, - strand, RNAz p=0.936772

	20-323, gnl\|bosTau2\|chr15 (14422463-14422764)
	20-323, gnl\|Hg17\|chr11 (118712661-118712954)
	20-323, gnl\|Mm7\|chr9 (44045687-44045390)

	337-633, gnl\|bosTau2\|chr15 (14422750-14423049)
	337-633, gnl\|Hg17\|chr11 (118712949-118713229)
	337-633, gnl\|Mm7\|chr9 (44045399-44045129)