Non-Coding RNA Search

Ss1.1-Lym1-jns93_F05.f.5

Sequence:


               
               ATATATGGTATTTATATTGGCATTTCTCAACCCAGTGTCACTAGATGTCACACACATTTG
TGGTGCTTTGATGTTTGCAAGTCTAACCTCTGAACATAAATTTGGTCAAATAATAAATTG
GAACAAAGGGAAAGAGATACTTGATATGAAAGCCATAATGACAGTGACTTGTTTCATGGG
GAAAAACACAAAGTCAGTTTCTCCCTCTACTCACAAAAAGGGAAAAAAAAAAGGAATCGA
AACTAGGACTTCAGGGCCCGGCAGTGTCCACACATCAGCATGTTAGACAACCACACATTT
TGTTGTTAGGTTTGAAAGACACTCACTCAAGAAAAACACCATCTCCACTTGGCCCTCTAA
CTGCCTGCCCTTTCTGTCCCCTCCCCCACCCAGGTTCTCATGCTATTTTCTTTCTCAGGG
TCCTCTTTGGTGGGCAGCCATTCTTCCAAAAGCTGTCATCAGTTGTCTGCAGTTAGAGGG
GGTCTGCATGGGCACAGGTCCTGCCACCTCCTTGTGTGGGTTTCAGCCCAAATCCTGCCA
TCCACACTGGGAGATTCCTACCAAGAATGACTTCAGGGTGTGCAGCCCCGAGCAGCAGGG
CTGTGCATCGAGCCGCACACCTGCTGGAAGGCTAGAAGTGAAGACCTTACGAATAGGAGC
CTAAGCCCAAGGGAGAATCCTGGTTCTAAAGTCTGGTATTGACACTGGAATGACAGCACA
GAAAAATCTCTCACTCCCAATGCCTTCTGAAATAAGGAATTTACCCTTTTTAATACCATG
GCCCTCCTAGTCATTGACCTTTGCTAAACCGTGGCAAGTCATAAATAGAGGAATCAATGA
ATTAAAAGCATTCCTTATTTTTTTTAACTAATATTTGCACATTTTCTTAGTATCTTTCCA
AATCTTCGCCTCTTTTTTTCCCCTTTTGACAGAAGGTTTCCCTTCCTGGATCATTCATTT
CACTTGGTTTCTAACTTTAGGTTTTCTTTCACTTGTTATTTGACTTAGCAGGTGCAACAA
AAACAAAGTGTGCCCACCCCACTTTCCTCTTAACTGAAAAGCTTAAAATAAATTTCTGAA
TTATGTATCATAAAGCTTTGACATTTCTTTATTAACTGATGAAATACTAGTTCTGAAGTC
TAGCATTGAAGCTTTCCACCAAAAGAAGTCTTCTCAATATAAGTTTTTTGCGGCAAAGTG
GTATTTATTGAGTTACATGTGAAAGAGACTGCTTGTATTTTTGAGGTTATTACAAACACA
CTGTGCAGAATTGGACAGATGTTCCGTGGTGTTTGGTTTCCCTTTCTTCTCTCTCCTGCT
TGCTCTGTGCTACAGCGGCAGCTTGTTTCTCTCAGGCTGGAAAGCCTGGCTCTCCGCAGT
GACATCCTCCCACACCTGGTTGCAGGGAGTGGTCGTGGCTATATGCAGCATCATGCTTAA
GAGTGTGTTTCCCCCAAGCCTGCTGCACTCACTGAGTTTCCATCTTTATACATTGCTCTT
GTTAAGAGGTACAATAAATAATTCCATGCAGGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATATGGTATTTATATTGGCATTTCTCAACCCAGTGTCACTAGATGTCACACACATTTG
TGGTGCTTTGATGTTTGCAAGTCTAACCTCTGAACATAAATTTGGTCAAATAATAAATTG
GAACAAAGGGAAAGAGATACTTGATATGAAAGCCATAATGACAGTGACTTGTTTCATGGG
GAAAAACACAAAGTCAGTTTCTCCCTCTACTCACAAAAAGGGAAAAAAAAAAGGAATCGA
AACTAGGACTTCAGGGCCCGGCAGTGTCCACACATCAGCATGTTAGACAACCACACATTT
TGTTGTTAGGTTTGAAAGACACTCACTCAAGAAAAACACCATCTCCACTTGGCCCTCTAA
CTGCCTGCCCTTTCTGTCCCCTCCCCCACCCAGGTTCTCATGCTATTTTCTTTCTCAGGG
TCCTCTTTGGTGGGCAGCCATTCTTCCAAAAGCTGTCATCAGTTGTCTGCAGTTAGAGGG
GGTCTGCATGGGCACAGGTCCTGCCACCTCCTTGTGTGGGTTTCAGCCCAAATCCTGCCA
TCCACACTGGGAGATTCCTACCAAGAATGACTTCAGGGTGTGCAGCCCCGAGCAGCAGGG
CTGTGCATCGAGCCGCACACCTGCTGGAAGGCTAGAAGTGAAGACCTTACGAATAGGAGC
CTAAGCCCAAGGGAGAATCCTGGTTCTAAAGTCTGGTATTGACACTGGAATGACAGCACA
GAAAAATCTCTCACTCCCAATGCCTTCTGAAATAAGGAATTTACCCTTTTTAATACCATG
GCCCTCCTAGTCATTGACCTTTGCTAAACCGTGGCAAGTCATAAATAGAGGAATCAATGA
ATTAAAAGCATTCCTTATTTTTTTTAACTAATATTTGCACATTTTCTTAGTATCTTTCCA
AATCTTCGCCTCTTTTTTTCCCCTTTTGACAGAAGGTTTCCCTTCCTGGATCATTCATTT
CACTTGGTTTCTAACTTTAGGTTTTCTTTCACTTGTTATTTGACTTAGCAGGTGCAACAA
AAACAAAGTGTGCCCACCCCACTTTCCTCTTAACTGAAAAGCTTAAAATAAATTTCTGAA
TTATGTATCATAAAGCTTTGACATTTCTTTATTAACTGATGAAATACTAGTTCTGAAGTC
TAGCATTGAAGCTTTCCACCAAAAGAAGTCTTCTCAATATAAGTTTTTTGCGGCAAAGTG
GTATTTATTGAGTTACATGTGAAAGAGACTGCTTGTATTTTTGAGGTTATTACAAACACA
CTGTGCAGAATTGGACAGATGTTCCGTGGTGTTTGGTTTCCCTTTCTTCTCTCTCCTGCT
TGCTCTGTGCTACAGCGGCAGCTTGTTTCTCTCAGGCTGGAAAGCCTGGCTCTCCGCAGT
GACATCCTCCCACACCTGGTTGCAGGGAGTGGTCGTGGCTATATGCAGCATCATGCTTAA
GAGTGTGTTTCCCCCAAGCCTGCTGCACTCACTGAGTTTCCATCTTTATACATTGCTCTT
GTTAAGAGGTACAATAAATAATTCCATGCAGGTGAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               118-234, - strand, RNAz p=0.887273
               

               
               499-604, - strand, RNAz p=0.959523
               

               
               644-763, + strand, RNAz p=0.689405

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-234, - strand, RNAz p=0.887273
               

               
               499-604, - strand, RNAz p=0.959523
               

               
               644-763, + strand, RNAz p=0.689405

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014268, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014268, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1094, gnl|bosTau2|chr2 (13225296-13224202)
               

               
               1-1094, gnl|Hg17|chr18 (30974696-30975822)
               

               
               1-1094, gnl|Mm7|chr18 (24275951-24277026)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1094, gnl|bosTau2|chr2 (13225296-13224202)
               

               
               1-1094, gnl|Hg17|chr18 (30974696-30975822)
               

               
               1-1094, gnl|Mm7|chr18 (24275951-24277026)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	118-234, - strand, RNAz p=0.887273
	499-604, - strand, RNAz p=0.959523
	644-763, + strand, RNAz p=0.689405

	1-1094, gnl\|bosTau2\|chr2 (13225296-13224202)
	1-1094, gnl\|Hg17\|chr18 (30974696-30975822)
	1-1094, gnl\|Mm7\|chr18 (24275951-24277026)

	rec (0.346141)
	tbr (0.308356)
	cbe (0.239234)
	fcc (0.197785)
	mgm (0.180343)
	fbs (0.175346)
	sin (0.174948)
	fhi (0.169578)
	mga (0.160205)
	cli (0.152812)
	cag (0.151194)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	nmm (0.132802)
	cov (0.132153)
	tra (0.123092)
	pgl (0.118483)
	cbl (0.114797)
	ldo (0.0970026)