Ss1.1-Lym1-jns94_F04.f.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGGGCTCAGGTCGGCGGTGCTGGCCTGGGGTTTCGGTAGATACCGGGTCTCAGCTAC TGGGCCCGGGAAGATGGTTCTAGGTGGTTGCCCGGTGAGTTACTTACTCCTGTGCGGCCA GGCGGCATTGCTGCTGGGGAATCTGCTTCTGCTGCATTGTGTCTCTCGGAGCCACTCGCA CAACACCACGGCGGAGCCCGAGTTCACAACGGCAGGCGCCGCCCAGCTGGAGGGCTCCAC CGGCGCCTTGAGCTGGGAATATGGCGACCCCCAATCTCCAGTCATCTCTTACCTACCCGA TGAATTTATAGAATGTGAAGACCCAGTGGATCATGTTGGAAATGCAACAGCATCCCAGGA ACTTGGTTATGGTTGTCTCAAGTTCGGTGGCCAGGCCTACAGTGATGTGGAGCACACTTC CGTTCAGTGCCGGGCCCTCGACGGAATCGAGTGCGCCAGTCCTAGGACCTTCCTACGAGA GAACAAGCCTTGTATAAAGTACACCGGGCACTACTTCATAACCACCTTACTCTACTCTTT CTTCCTGGGATGGCTTTGGCGTGGACCGTTTCTGCCTGGGACACACCGGCACAGCAGTAG GGAAGCTCTTGACGCTTGGAGGACGGGGATTTGGTGGTTTGTTGACCTTATTTTGCTTAT TACTGGAGGGCTGATGCCAAGCGATGGCAGTAACTGGTGCACTGTTTACTAGAAAGAGCT GCTTTGATGGCCCAGAGGGCCAAGTCTTCTGAATTCATCTCTCCAGGCTCAAAAAGCCTT CCTTCACATCAGACTTGGCCGTTACTTTCCCTCTTTGGAGGGAATGGGTTTGTTAAGACG GCTTCTTCAGACCATGGATATTGCACCCAAACTTACCTTGCAGACCAGAAATGACATGCA AACAGTATAATGAGTATCAAGTATGTACCTTTCCGCATGCGTGAAATATAAAGGCTAGTG ATTGACTTATCAGCTGCAGAGGGGTTTCCATACTCTATTTGTGTGCATTGCTACATCGTC AGTCCTTTGGACCAAGTGGCCCCAACAGGATGAGCAAAGTGGATGTTTGTAGCCTCATGT CTTTTGTGACCCTGAGTCATCATGCAGCAGAGATCTGAAGCGAAACCTGCGGAAATCTGC AGCAGAAGTAGAAGTGGTGATGGATTTTTAATACACACTGAAATTCTGACTTTCTGAATT TAAACTGCAGAATAAATGTTGCCAACCTGGCATGCTTGTTTGGGTATTTTCAGTAGGTAG AGTGAAACTCAAAATGATACTGGTTTTGCTTAAAGTTAGGTGTTTGAAATGAACCTATTA AAAAAAAAAAAACTATTGTTTTACCATTATGGTGATGCCTGAGAGGCAATGTGTACAGTA TAATAATTTCTTCATCCCAACTATGTTTTGAAAGCCAACAGCATCAGACTTGTCTGGGTT AATGAGCTATCCTCTTGGCAGCATTTTCCTCTTGAAAAAGTAAGATTTACCAGTTTAGAG AGCCTATGTTAGTAGGCTGATAAAAAAAAAAGATTTCAGGGAGTTCCCTAGTAGCCATGC TGTTAAGGATCTGGCCTTGTCACTGCTGTGGCGCAGGTTTGATCCCTGGGCCAGAAACAT CCACATGCCATGTGTGTAGCCAAGAAAAAAAGATTTCATACAAGTAACTAAATCTGTTCT TCAGGGTTAGGTAAGATTAGATAAGGAGCCTCATGCCCTTGGAAAGAAAAACACTCTTAA AGGATAGTATTAACTGAGTTCTGGGTAGAGTTAGGATGTCTTATTGGGGAGCAAAGAGAA ACGGAACACACTGTCAAAATAAGCATGATACCAAAACCCTCTCTCTGTGGGAACAGAAGT TAGTCCTAGGGAAAAAGCAGCCAAGATTTTACATTACCAAATCACTAAGAATAAAAATGT GTTCTGGCTTAGTGGGTTATGAGTCTGACTGCAGCAGCTCAGGTGACCGAATAGGTCACA GCTGTGGATCAGATTCAGTCCCTGGCCCAGGAGTTTCCATAAGCCACAGGTGCAGCTATA AAATAAAATTTAAAAAAAAAGAAGGGGTCCCGTCATGGCTCAGCAGCAACGAACCCAATT AGTATCCATGAGGACGCAGGTTCGATCCTTGGCCTCACTCAGTGGACTAAGAATCCAGCG TTGCTGTGAGCTGTGGTGTAGGTTGAAGATGTGGCTTGGATCTGGCCTTGCTCTGGCTGT GGTGTAGGCCGGCGGCTGTAGCTCCAAATCAACCCCTAGCCTGCGACCTTCCATATGCCA TGGGTGCGGCTCTAAAAAGAAAGAAAGAAAATGTCTGCATTATAAGTGGTTTTAAAAACT TAGTTCACATCGTTTGCAGTGTGAGTTGAAAAGAACTGTTAAATATAAAGGAAAAGGGGA ATTTTGTGAGTAATCAAACTAGGAGCCTGCTATTTGGGCAACTTATAAATTCTAGAAACA ATCAAGGTAGAACTGCTTAAAATTCAGTCTCATAATAGTTGATGTAAAACCAAGAATCAC AGTTAAAATAGCTCTGTCATTATGAAGTTTCCTTGAAAGTTTCAGCTTTATTGTCCTTGA TTCATATGATCACTGTTCTTATTAAGTGGTTCATGTTAAAAATGAACAGAATATTCTGTT CTGTCTTAAATTCTGTACCATGTTGACCTTAACCTTGTTTATAACAGTAATAATTGATAG ATCCTTATTTATAATCTTTATACTGTAAGGCCATATTTTTTAAATTGTTACGGGTCATGA AGAAACTGGAGCTTCTCCCCAGAAAAATGCATATACACAAAAAATTTTGCATAGAACTTG AGAGAGTTCAAGGATACCCTTTTTAAAAAGAAAAACTCACTTCTAAGAAAAATCTGGAAA ATAGACTAAAATTAAAATCTTACCCAAAATAAGATACTACTTTAAACTACAAATCCTGCT TCATATCACAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGGGCTCAGGTCGGCGGTGCTGGCCTGGGGTTTCGGTAGATACCGGGTCTCAGCTAC TGGGCCCGGGAAGATGGTTCTAGGTGGTTGCCCGGTGAGTTACTTACTCCTGTGCGGCCA GGCGGCATTGCTGCTGGGGAATCTGCTTCTGCTGCATTGTGTCTCTCGGAGCCACTCGCA CAACACCACGGCGGAGCCCGAGTTCACAACGGCAGGCGCCGCCCAGCTGGAGGGCTCCAC CGGCGCCTTGAGCTGGGAATATGGCGACCCCCAATCTCCAGTCATCTCTTACCTACCCGA TGAATTTATAGAATGTGAAGACCCAGTGGATCATGTTGGAAATGCAACAGCATCCCAGGA ACTTGGTTATGGTTGTCTCAAGTTCGGTGGCCAGGCCTACAGTGATGTGGAGCACACTTC CGTTCAGTGCCGGGCCCTCGACGGAATCGAGTGCGCCAGTCCTAGGACCTTCCTACGAGA GAACAAGCCTTGTATAAAGTACACCGGGCACTACTTCATAACCACCTTACTCTACTCTTT CTTCCTGGGATGGCTTTGGCGTGGACCGTTTCTGCCTGGGACACACCGGCACAGCAGTAG GGAAGCTCTTGACGCTTGGAGGACGGGGATTTGGTGGTTTGTTGACCTTATTTTGCTTAT TACTGGAGGGCTGATGCCAAGCGATGGCAGTAACTGGTGCACTGTTTACTAGAAAGAGCT GCTTTGATGGCCCAGAGGGCCAAGTCTTCTGAATTCATCTCTCCAGGCTCAAAAAGCCTT CCTTCACATCAGACTTGGCCGTTACTTTCCCTCTTTGGAGGGAATGGGTTTGTTAAGACG GCTTCTTCAGACCATGGATATTGCACCCAAACTTACCTTGCAGACCAGAAATGACATGCA AACAGTATAATGAGTATCAAGTATGTACCTTTCCGCATGCGTGAAATATAAAGGCTAGTG ATTGACTTATCAGCTGCAGAGGGGTTTCCATACTCTATTTGTGTGCATTGCTACATCGTC AGTCCTTTGGACCAAGTGGCCCCAACAGGATGAGCAAAGTGGATGTTTGTAGCCTCATGT CTTTTGTGACCCTGAGTCATCATGCAGCAGAGATCTGAAGCGAAACCTGCGGAAATCTGC AGCAGAAGTAGAAGTGGTGATGGATTTTTAATACACACTGAAATTCTGACTTTCTGAATT TAAACTGCAGAATAAATGTTGCCAACCTGGCATGCTTGTTTGGGTATTTTCAGTAGGTAG AGTGAAACTCAAAATGATACTGGTTTTGCTTAAAGTTAGGTGTTTGAAATGAACCTATTA AAAAAAAAAAAACTATTGTTTTACCATTATGGTGATGCCTGAGAGGCAATGTGTACAGTA TAATAATTTCTTCATCCCAACTATGTTTTGAAAGCCAACAGCATCAGACTTGTCTGGGTT AATGAGCTATCCTCTTGGCAGCATTTTCCTCTTGAAAAAGTAAGATTTACCAGTTTAGAG AGCCTATGTTAGTAGGCTGATAAAAAAAAAAGATTTCAGGGAGTTCCCTAGTAGCCATGC TGTTAAGGATCTGGCCTTGTCACTGCTGTGGCGCAGGTTTGATCCCTGGGCCAGAAACAT CCACATGCCATGTGTGTAGCCAAGAAAAAAAGATTTCATACAAGTAACTAAATCTGTTCT TCAGGGTTAGGTAAGATTAGATAAGGAGCCTCATGCCCTTGGAAAGAAAAACACTCTTAA AGGATAGTATTAACTGAGTTCTGGGTAGAGTTAGGATGTCTTATTGGGGAGCAAAGAGAA ACGGAACACACTGTCAAAATAAGCATGATACCAAAACCCTCTCTCTGTGGGAACAGAAGT TAGTCCTAGGGAAAAAGCAGCCAAGATTTTACATTACCAAATCACTAAGAATAAAAATGT GTTCTGGCTTAGTGGGTTATGAGTCTGACTGCAGCAGCTCAGGTGACCGAATAGGTCACA GCTGTGGATCAGATTCAGTCCCTGGCCCAGGAGTTTCCATAAGCCACAGGTGCAGCTATA AAATAAAATTTAAAAAAAAAGAAGGGGTCCCGTCATGGCTCAGCAGCAACGAACCCAATT AGTATCCATGAGGACGCAGGTTCGATCCTTGGCCTCACTCAGTGGACTAAGAATCCAGCG TTGCTGTGAGCTGTGGTGTAGGTTGAAGATGTGGCTTGGATCTGGCCTTGCTCTGGCTGT GGTGTAGGCCGGCGGCTGTAGCTCCAAATCAACCCCTAGCCTGCGACCTTCCATATGCCA TGGGTGCGGCTCTAAAAAGAAAGAAAGAAAATGTCTGCATTATAAGTGGTTTTAAAAACT TAGTTCACATCGTTTGCAGTGTGAGTTGAAAAGAACTGTTAAATATAAAGGAAAAGGGGA ATTTTGTGAGTAATCAAACTAGGAGCCTGCTATTTGGGCAACTTATAAATTCTAGAAACA ATCAAGGTAGAACTGCTTAAAATTCAGTCTCATAATAGTTGATGTAAAACCAAGAATCAC AGTTAAAATAGCTCTGTCATTATGAAGTTTCCTTGAAAGTTTCAGCTTTATTGTCCTTGA TTCATATGATCACTGTTCTTATTAAGTGGTTCATGTTAAAAATGAACAGAATATTCTGTT CTGTCTTAAATTCTGTACCATGTTGACCTTAACCTTGTTTATAACAGTAATAATTGATAG ATCCTTATTTATAATCTTTATACTGTAAGGCCATATTTTTTAAATTGTTACGGGTCATGA AGAAACTGGAGCTTCTCCCCAGAAAAATGCATATACACAAAAAATTTTGCATAGAACTTG AGAGAGTTCAAGGATACCCTTTTTAAAAAGAAAAACTCACTTCTAAGAAAAATCTGGAAA ATAGACTAAAATTAAAATCTTACCCAAAATAAGATACTACTTTAAACTACAAATCCTGCT TCATATCACAGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 5-286, gnl|bosTau2|chr27 (22699668-22699384) | |
| 5-286, gnl|canFam2|chr16 (29505503-29505287) | |
| 5-286, gnl|dasNov1|scaffold_11838 (40684-40466) | |
| 5-286, gnl|echTel1|scaffold_291789 (40305-40107) | |
| 5-286, gnl|fr1|chrUn (60617048-60616785) | |
| 5-286, gnl|galGal2|chrUn (603300-603489) | |
| 5-286, gnl|hg17|chr8 (38972881-38973097) | |
| 5-286, gnl|Hg17|chr8 (38973184-38972903) | |
| 5-286, gnl|mm7|chr8 (23771364-23771151) | |
| 5-286, gnl|Mm7|chr8 (23771062-23771340) | |
| 5-286, gnl|monDom2|scaffold_1 (83511515-83511293) | |
| 5-286, gnl|oryCun1|scaffold_61973 (1232-1451) | |
| 5-286, gnl|panTro1|chr7 (40358845-40359061) | |
| 5-286, gnl|rheMac2|chr8 (39476596-39476812) | |
| 5-286, gnl|rn3|chr16 (71445975-71446188) | |
| 5-286, gnl|tetNig1|chr12 (12042576-12042315) | |
| 5-286, gnl|xenTro1|scaffold_190 (1056438-1056606) | |
| 488-1530, gnl|bosTau2|chr27 (22694345-22693331) | |
| 488-1530, gnl|Hg17|chr8 (38968233-38967211) | |
| 488-1530, gnl|Mm7|chr8 (23776323-23777682) | |
| 1628-1938, gnl|bosTau2|chr27 (22693356-22693040) | |
| 2326-2950, gnl|bosTau2|chr27 (22693046-22692416) | |
| 2326-2950, gnl|Hg17|chr8 (38967078-38966363) | |
| 2326-2950, gnl|Mm7|chr8 (23778017-23778567) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-286, gnl|bosTau2|chr27 (22699668-22699384) | |
| 5-286, gnl|canFam2|chr16 (29505503-29505287) | |
| 5-286, gnl|dasNov1|scaffold_11838 (40684-40466) | |
| 5-286, gnl|echTel1|scaffold_291789 (40305-40107) | |
| 5-286, gnl|fr1|chrUn (60617048-60616785) | |
| 5-286, gnl|galGal2|chrUn (603300-603489) | |
| 5-286, gnl|hg17|chr8 (38972881-38973097) | |
| 5-286, gnl|Hg17|chr8 (38973184-38972903) | |
| 5-286, gnl|mm7|chr8 (23771364-23771151) | |
| 5-286, gnl|Mm7|chr8 (23771062-23771340) | |
| 5-286, gnl|monDom2|scaffold_1 (83511515-83511293) | |
| 5-286, gnl|oryCun1|scaffold_61973 (1232-1451) | |
| 5-286, gnl|panTro1|chr7 (40358845-40359061) | |
| 5-286, gnl|rheMac2|chr8 (39476596-39476812) | |
| 5-286, gnl|rn3|chr16 (71445975-71446188) | |
| 5-286, gnl|tetNig1|chr12 (12042576-12042315) | |
| 5-286, gnl|xenTro1|scaffold_190 (1056438-1056606) | |
| 488-1530, gnl|bosTau2|chr27 (22694345-22693331) | |
| 488-1530, gnl|Hg17|chr8 (38968233-38967211) | |
| 488-1530, gnl|Mm7|chr8 (23776323-23777682) | |
| 1628-1938, gnl|bosTau2|chr27 (22693356-22693040) | |
| 2326-2950, gnl|bosTau2|chr27 (22693046-22692416) | |
| 2326-2950, gnl|Hg17|chr8 (38967078-38966363) | |
| 2326-2950, gnl|Mm7|chr8 (23778017-23778567) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cty (0.5204) | |
| pla (0.401016) | |
| vin (0.332557) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| mgp (0.230681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fco (0.157208) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| kid (0.129735) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.5204) | |
| pla (0.401016) | |
| vin (0.332557) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| mgp (0.230681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fco (0.157208) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| kid (0.129735) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| nbm (0.0993246) |