Non-Coding RNA Search

Ss1.1-Lym1-jns95_C11.f.5

Sequence:


               
               TGGATCTCCGCAGAAACTTGCTCACAGCCCTTCCTCAGAGGGCTGTGTCGGAGCAGCTCT
CGGGAAGTCTGCGGACCATCTACCTCAGTCAGAATCCCTATGACTGCTGTGGGGTGGAGG
GCTGGGAGGCCCTGCAGCGCCTGCACACCGTGGCCGACTTGGCCATGGTCACTTGCAACC
TCTCCTCCAAGGTCCTGCGCCTGACGGAGCTGCCCAGAGGCGTCCCTCTGGACTGTAAGT
GGGAGCGGGTAGACATGGGCCTGCTGTACCTCGTGCTCATTCTTCCCAGCTGCCTCACCC
TGCTGGTGGCCTGCACTGTCATCTTCCTCACTTTCAGGAAGCCTTTGCTTCAGGTCATCA
AGAGCCGGTGCCACTGGTCCTCCATCTACTGATCTGGCAGCGTGCCCACGTTAGAAATCT
GGTCTGTGCACGTAAGGACGCTTTCTCTGCCAGATTTCAAGACCCCCCCACTGCCAAGGA
TAAGCCTGCTGAATCGAGGTTTAAATTAAAGGTCGAAATGTTTCCATCCCTTAGCGATCC
CAAATTCTTCCTCCCATCATTGTGATATATCCGTATCATCCTGGTAAAATATTTATTGAC
ATTCTATGAAAATAAAAACCGTGTCCTATAAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATCTCCGCAGAAACTTGCTCACAGCCCTTCCTCAGAGGGCTGTGTCGGAGCAGCTCT
CGGGAAGTCTGCGGACCATCTACCTCAGTCAGAATCCCTATGACTGCTGTGGGGTGGAGG
GCTGGGAGGCCCTGCAGCGCCTGCACACCGTGGCCGACTTGGCCATGGTCACTTGCAACC
TCTCCTCCAAGGTCCTGCGCCTGACGGAGCTGCCCAGAGGCGTCCCTCTGGACTGTAAGT
GGGAGCGGGTAGACATGGGCCTGCTGTACCTCGTGCTCATTCTTCCCAGCTGCCTCACCC
TGCTGGTGGCCTGCACTGTCATCTTCCTCACTTTCAGGAAGCCTTTGCTTCAGGTCATCA
AGAGCCGGTGCCACTGGTCCTCCATCTACTGATCTGGCAGCGTGCCCACGTTAGAAATCT
GGTCTGTGCACGTAAGGACGCTTTCTCTGCCAGATTTCAAGACCCCCCCACTGCCAAGGA
TAAGCCTGCTGAATCGAGGTTTAAATTAAAGGTCGAAATGTTTCCATCCCTTAGCGATCC
CAAATTCTTCCTCCCATCATTGTGATATATCCGTATCATCCTGGTAAAATATTTATTGAC
ATTCTATGAAAATAAAAACCGTGTCCTATAAAATTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.989539
               

               
               277-396, - strand, RNAz p=0.549588

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.989539
               

               
               277-396, - strand, RNAz p=0.549588

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr1 (43343684-43344331)
               

               
               1-636, gnl|Hg17|chr3 (197876512-197877174)
               

               
               1-636, gnl|Mm7|chr16 (31817951-31817321)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr1 (43343684-43344331)
               

               
               1-636, gnl|Hg17|chr3 (197876512-197877174)
               

               
               1-636, gnl|Mm7|chr16 (31817951-31817321)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               spl (0.143184)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               cly (0.120642)

	1-119, - strand, RNAz p=0.989539
	277-396, - strand, RNAz p=0.549588

	1-636, gnl\|bosTau2\|chr1 (43343684-43344331)
	1-636, gnl\|Hg17\|chr3 (197876512-197877174)
	1-636, gnl\|Mm7\|chr16 (31817951-31817321)