Non-Coding RNA Search

Ss1.1-Lym2-sn01_E04.f.5

Sequence:


               
               TAACTGCTTTAGTGTTCTAAAGTTTACTTCTGTGAGGCTTTTCCTTTGTCTGAAGTTTTC
AGATTGACATGTTTTCCTTTAGGTCCTCTAGGATAGTTTAGCCCTGTTTTGACTTTTAAT
ATCCACCTTGAAGGGTCACTGCTTTAAGGGTTTATATCCCAGAGGAGTTTTTACATTGGG
ATGTTACTAAAAGTGGCTTCGTTAATGTTATTTCTTTGATTATAGATTACACAATTACAT
TTACCACCATAGTATTAGTGGAAAAATGTGCCATATGATTTAATTCTCCATACCACCAGT
GTAGCTCTTAAAACTACTGTGTATATGTGTGTGGGTTTTTACTTTTTGTTTGCTTTTATT
TTTTTAATTTTTATTATGGCTTTATTATAAAAGTAATTCTCATTGTAAAATCTCAAACAA
TAAAGAAGTATATGAATTTAAAAGTAAGAGCACTCCCCTCACCCTAACCCATTTCCGCAC
ACCCAAGGTAAAATGTTAATAATTTGATATGTATCCTTCCAGATATTTTTTCTATGCATA
TTCAAACATACATAAATACTTCAGTGCGTCTAATGAATTAAATTTTTTTAAATGTCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACTGCTTTAGTGTTCTAAAGTTTACTTCTGTGAGGCTTTTCCTTTGTCTGAAGTTTTC
AGATTGACATGTTTTCCTTTAGGTCCTCTAGGATAGTTTAGCCCTGTTTTGACTTTTAAT
ATCCACCTTGAAGGGTCACTGCTTTAAGGGTTTATATCCCAGAGGAGTTTTTACATTGGG
ATGTTACTAAAAGTGGCTTCGTTAATGTTATTTCTTTGATTATAGATTACACAATTACAT
TTACCACCATAGTATTAGTGGAAAAATGTGCCATATGATTTAATTCTCCATACCACCAGT
GTAGCTCTTAAAACTACTGTGTATATGTGTGTGGGTTTTTACTTTTTGTTTGCTTTTATT
TTTTTAATTTTTATTATGGCTTTATTATAAAAGTAATTCTCATTGTAAAATCTCAAACAA
TAAAGAAGTATATGAATTTAAAAGTAAGAGCACTCCCCTCACCCTAACCCATTTCCGCAC
ACCCAAGGTAAAATGTTAATAATTTGATATGTATCCTTCCAGATATTTTTTCTATGCATA
TTCAAACATACATAAATACTTCAGTGCGTCTAATGAATTAAATTTTTTTAAATGTCTGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               77-194, - strand, RNAz p=0.734783

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-194, - strand, RNAz p=0.734783

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               1-194, gnl|bosTau2|chr26 (7287458-7287265)
               

               
               1-194, gnl|canFam2|chr28 (7326713-7327746)
               

               
               1-194, gnl|dasNov1|scaffold_3855 (74344-75376)
               

               
               1-194, gnl|echTel1|scaffold_325375 (189479-190405)
               

               
               1-194, gnl|hg17|chr10 (91169108-91170157)
               

               
               1-194, gnl|Hg17|chr10 (91169352-91169543)
               

               
               1-194, gnl|loxAfr1|scaffold_35711 (1976-3008)
               

               
               1-194, gnl|oryCun1|scaffold_181803 (33848-34910)
               

               
               1-194, gnl|panTro1|chr8 (92866956-92868004)
               

               
               1-194, gnl|rheMac2|chr9 (88974044-88975112)
               


               
               232-600, gnl|bosTau2|chr26 (7287261-7286886)
               

               
               232-600, gnl|canFam2|chr28 (7326713-7327746)
               

               
               232-600, gnl|dasNov1|scaffold_3855 (74344-75376)
               

               
               232-600, gnl|echTel1|scaffold_325375 (189479-190405)
               

               
               232-600, gnl|hg17|chr10 (91169108-91170157)
               

               
               232-600, gnl|Hg17|chr10 (91169557-91169956)
               

               
               232-600, gnl|loxAfr1|scaffold_35711 (1976-3008)
               

               
               232-600, gnl|oryCun1|scaffold_181803 (33848-34910)
               

               
               232-600, gnl|panTro1|chr8 (92866956-92868004)
               

               
               232-600, gnl|rheMac2|chr9 (88974044-88975112)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-194, gnl|bosTau2|chr26 (7287458-7287265)
               

               
               1-194, gnl|canFam2|chr28 (7326713-7327746)
               

               
               1-194, gnl|dasNov1|scaffold_3855 (74344-75376)
               

               
               1-194, gnl|echTel1|scaffold_325375 (189479-190405)
               

               
               1-194, gnl|hg17|chr10 (91169108-91170157)
               

               
               1-194, gnl|Hg17|chr10 (91169352-91169543)
               

               
               1-194, gnl|loxAfr1|scaffold_35711 (1976-3008)
               

               
               1-194, gnl|oryCun1|scaffold_181803 (33848-34910)
               

               
               1-194, gnl|panTro1|chr8 (92866956-92868004)
               

               
               1-194, gnl|rheMac2|chr9 (88974044-88975112)
               


               
               232-600, gnl|bosTau2|chr26 (7287261-7286886)
               

               
               232-600, gnl|canFam2|chr28 (7326713-7327746)
               

               
               232-600, gnl|dasNov1|scaffold_3855 (74344-75376)
               

               
               232-600, gnl|echTel1|scaffold_325375 (189479-190405)
               

               
               232-600, gnl|hg17|chr10 (91169108-91170157)
               

               
               232-600, gnl|Hg17|chr10 (91169557-91169956)
               

               
               232-600, gnl|loxAfr1|scaffold_35711 (1976-3008)
               

               
               232-600, gnl|oryCun1|scaffold_181803 (33848-34910)
               

               
               232-600, gnl|panTro1|chr8 (92866956-92868004)
               

               
               232-600, gnl|rheMac2|chr9 (88974044-88975112)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cag (0.151194)

	1-194, gnl\|bosTau2\|chr26 (7287458-7287265)
	1-194, gnl\|canFam2\|chr28 (7326713-7327746)
	1-194, gnl\|dasNov1\|scaffold_3855 (74344-75376)
	1-194, gnl\|echTel1\|scaffold_325375 (189479-190405)
	1-194, gnl\|hg17\|chr10 (91169108-91170157)
	1-194, gnl\|Hg17\|chr10 (91169352-91169543)
	1-194, gnl\|loxAfr1\|scaffold_35711 (1976-3008)
	1-194, gnl\|oryCun1\|scaffold_181803 (33848-34910)
	1-194, gnl\|panTro1\|chr8 (92866956-92868004)
	1-194, gnl\|rheMac2\|chr9 (88974044-88975112)

	232-600, gnl\|bosTau2\|chr26 (7287261-7286886)
	232-600, gnl\|canFam2\|chr28 (7326713-7327746)
	232-600, gnl\|dasNov1\|scaffold_3855 (74344-75376)
	232-600, gnl\|echTel1\|scaffold_325375 (189479-190405)
	232-600, gnl\|hg17\|chr10 (91169108-91170157)
	232-600, gnl\|Hg17\|chr10 (91169557-91169956)
	232-600, gnl\|loxAfr1\|scaffold_35711 (1976-3008)
	232-600, gnl\|oryCun1\|scaffold_181803 (33848-34910)
	232-600, gnl\|panTro1\|chr8 (92866956-92868004)
	232-600, gnl\|rheMac2\|chr9 (88974044-88975112)