Non-Coding RNA Search

Ss1.1-Lym2-sn01_H10.f.5

Sequence:


               
               GACGAGCGCGGTGGCGGCGGCGGCGGTCGGGGGGACGGCGTGGAGGAGGAGGTGCCTCCC
GTGGGGCCGAAATCCGGCCCCGAACCAGCCGGCCTCTGCCGCCGGCCCTGCCCCTTCGAA
CAGGCACAGGGAGGCGATGGGCCGGAGGAGCAGTGAGGGGCCCGGTTTAACGCGGCTAAG
GTCTGATTCTGCGCCAACTTCTGCAAGGACCCTCTGCGCGCCCCGTGGCGTGTGCAGGAT
CCGCCCCGCAGCCCCCTGCAAGGCGGGGTAAGGCCATGGGACCTTTTGGCAAGGCCCGGG
GTTCAAGAGACCGCACGGCTGAAATCCCCTTTCCGCCCCTGGGGCGTCTCTCCATCACCC
TCTCCCCGGCTCCAGCCCCCGGACAGGGACCCCCCACAGTACCGCCAAACTGGGCTACAG
GCCTGGGCCGAGCGTGTCGCGAGCTTTGCACATTCCTACGGCGCGACTGTTTGCAATAAA
GAAATTTTGTATTGTCCTCATTGGGATGGCTCCTGCGGAGAGGGGACAGAGAGCTCCGGG
GGTGTGTGCACGGCTGACCCACCCGATTGGGCACTGCGGTGGTGGCTGCCTTGAACTGCG
GTTGAGGAGGGAGGGTCCCCTAGGCCCCGCCCACCACCAATGGCGCTCCTGGAGGCCCCG
CCCCTCCCCACCCCCGCCTGCTTTGGCCCGTCCCACCCCATCCACTCAGGAGAGAAACGC
CTGGGCCGGGTGGGGCCGGGTGGGGCCGGGTGGGGCGGGGGAGCCTGTAGGAACCTCAGC
GGAGGGGATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGAGCGCGGTGGCGGCGGCGGCGGTCGGGGGGACGGCGTGGAGGAGGAGGTGCCTCCC
GTGGGGCCGAAATCCGGCCCCGAACCAGCCGGCCTCTGCCGCCGGCCCTGCCCCTTCGAA
CAGGCACAGGGAGGCGATGGGCCGGAGGAGCAGTGAGGGGCCCGGTTTAACGCGGCTAAG
GTCTGATTCTGCGCCAACTTCTGCAAGGACCCTCTGCGCGCCCCGTGGCGTGTGCAGGAT
CCGCCCCGCAGCCCCCTGCAAGGCGGGGTAAGGCCATGGGACCTTTTGGCAAGGCCCGGG
GTTCAAGAGACCGCACGGCTGAAATCCCCTTTCCGCCCCTGGGGCGTCTCTCCATCACCC
TCTCCCCGGCTCCAGCCCCCGGACAGGGACCCCCCACAGTACCGCCAAACTGGGCTACAG
GCCTGGGCCGAGCGTGTCGCGAGCTTTGCACATTCCTACGGCGCGACTGTTTGCAATAAA
GAAATTTTGTATTGTCCTCATTGGGATGGCTCCTGCGGAGAGGGGACAGAGAGCTCCGGG
GGTGTGTGCACGGCTGACCCACCCGATTGGGCACTGCGGTGGTGGCTGCCTTGAACTGCG
GTTGAGGAGGGAGGGTCCCCTAGGCCCCGCCCACCACCAATGGCGCTCCTGGAGGCCCCG
CCCCTCCCCACCCCCGCCTGCTTTGGCCCGTCCCACCCCATCCACTCAGGAGAGAAACGC
CTGGGCCGGGTGGGGCCGGGTGGGGCCGGGTGGGGCGGGGGAGCCTGTAGGAACCTCAGC
GGAGGGGATGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               44-162, - strand, RNAz p=0.570191

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-162, - strand, RNAz p=0.570191

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               8-162, gnl|bosTau2|chr29 (39546351-39546505)
               

               
               8-162, gnl|Hg17|chr11 (67515718-67515587)
               

               
               8-162, gnl|Mm7|chr19 (3843618-3843754)
               


               
               237-453, gnl|bosTau2|chr29 (39546647-39546867)
               

               
               237-453, gnl|Hg17|chr11 (67515426-67515222)
               


               
               473-725, gnl|bosTau2|chr29 (39546914-39547167)
               

               
               473-725, gnl|Hg17|chr11 (67515174-67514894)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-162, gnl|bosTau2|chr29 (39546351-39546505)
               

               
               8-162, gnl|Hg17|chr11 (67515718-67515587)
               

               
               8-162, gnl|Mm7|chr19 (3843618-3843754)
               


               
               237-453, gnl|bosTau2|chr29 (39546647-39546867)
               

               
               237-453, gnl|Hg17|chr11 (67515426-67515222)
               


               
               473-725, gnl|bosTau2|chr29 (39546914-39547167)
               

               
               473-725, gnl|Hg17|chr11 (67515174-67514894)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (0.152812)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               cag (0.151194)

	8-162, gnl\|bosTau2\|chr29 (39546351-39546505)
	8-162, gnl\|Hg17\|chr11 (67515718-67515587)
	8-162, gnl\|Mm7\|chr19 (3843618-3843754)

	237-453, gnl\|bosTau2\|chr29 (39546647-39546867)
	237-453, gnl\|Hg17\|chr11 (67515426-67515222)

	473-725, gnl\|bosTau2\|chr29 (39546914-39547167)
	473-725, gnl\|Hg17\|chr11 (67515174-67514894)