Ss1.1-Lym2-sn02_A01.f.5
|
CAGCCAGCTGCCACAGATGCCCCCAACGGAGACCTCACGCCTGAGATGATCCTCAGCATG
ATGGACCGGTGATGGCGGGGCCTCGCTCATTGCCAGGACTGCTCTGGGCTGTGTTTAAAC
GGCCCGCATCTTAATTTTTCTCCCTTTCTTCTTTTGGCTTTGGGAAAAGCATCATTTTAC
CAAACATACTGAGAGCTAAAACTTCAAGGATGATGTTAGAAAAATGTGATTTAACTAGAA
CTTGCTGTTTGATGTTAGCAAATCATGGAGTGTTCTGAGTCCCTGAGGGTTTACTGTGAA
GTGCTGAGGACAGTGTTGACGCCTAACTGGTTTTCTTGGATGGAAACACAGACATTGAAC
CCTCTCTCTTGCTATGGTAAACCACTCCAGAAACCACCACCGGGTTTCCCAGAGTTCTAT
GGTCTTCTTCCCAGGAGTTTTTAATTGTAAATGCGGACTTGGGAAAGACTTAGACTTTTA
AACTGGTTTTTGCTTTTGCTTTTCCCTGACTCCCTTTGCTTGGAGTCAGCTGCACACCAG
TAGTATGGCATGCTACGGTCGGTTTCTGTCCTAAAGGCTTTGCCTCTTTCTTGGCAAAGT
TTCTGGTATGGTCAAGCTTGTAAATAACTTTTTTTACATTTTAATCTTTTCCATTAATTA
AGAGGTTGAAAAGAAGTGCAGTGTAAGAAAACCCAGCATTTTAATTACTTGCAAATTAAG
TTACCACAGACTATAATATATAAATGTTGACAAGGAATTGGATCACAATCATGTAGCAGA
ACGGCACCCAGACTGCTGCCTGCTAGTGACAGACATCCACTTGGAAGATCGTGATTTCCA
GCCCGTGGAGCCAGCATTTGAACCTTGTACAATTAACTTTGAGTTATGATTTCCCATCTA
CATTTTCTTTGCTTTGTTTCTAGCTGAATTTTGTGTTTTATAAATCCTCTATTAAAGCAG
AAGGGTGATTATGAGTGGGTCACAGCAGCCCTTAAAAGCTGGGCCAGAAAATTTCACTAG
GTCAGTAATTTAAACTTTGGATCTTCAAAAAATAATAATGTGAAGCAAAACCAACTAAAG
TGATTCTTGCACATGAACTGTCACATGTTAAAAATGTGTTTTTTAGAGAGCCTCAGTCTT
GCTGATTTCAGACACTTTTTTCTTCTGTGTATTGCTTTTAAGAGAGCCATCAGTTAGCTA
TCAGACTTTAGGTTGATGCATTTTGTACTTAGCTGTACTGTGTGATATTTTTCATTATTT
TAGGACGCCAACACGAGACCTGTAATAAAATATGTAATGGGGTTGAAAGCTGGGGAGGAG
GATCTACTGCTGTACAGCTAATAAATCATAACGGATTAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGCCAGCTGCCACAGATGCCCCCAACGGAGACCTCACGCCTGAGATGATCCTCAGCATG
ATGGACCGGTGATGGCGGGGCCTCGCTCATTGCCAGGACTGCTCTGGGCTGTGTTTAAAC
GGCCCGCATCTTAATTTTTCTCCCTTTCTTCTTTTGGCTTTGGGAAAAGCATCATTTTAC
CAAACATACTGAGAGCTAAAACTTCAAGGATGATGTTAGAAAAATGTGATTTAACTAGAA
CTTGCTGTTTGATGTTAGCAAATCATGGAGTGTTCTGAGTCCCTGAGGGTTTACTGTGAA
GTGCTGAGGACAGTGTTGACGCCTAACTGGTTTTCTTGGATGGAAACACAGACATTGAAC
CCTCTCTCTTGCTATGGTAAACCACTCCAGAAACCACCACCGGGTTTCCCAGAGTTCTAT
GGTCTTCTTCCCAGGAGTTTTTAATTGTAAATGCGGACTTGGGAAAGACTTAGACTTTTA
AACTGGTTTTTGCTTTTGCTTTTCCCTGACTCCCTTTGCTTGGAGTCAGCTGCACACCAG
TAGTATGGCATGCTACGGTCGGTTTCTGTCCTAAAGGCTTTGCCTCTTTCTTGGCAAAGT
TTCTGGTATGGTCAAGCTTGTAAATAACTTTTTTTACATTTTAATCTTTTCCATTAATTA
AGAGGTTGAAAAGAAGTGCAGTGTAAGAAAACCCAGCATTTTAATTACTTGCAAATTAAG
TTACCACAGACTATAATATATAAATGTTGACAAGGAATTGGATCACAATCATGTAGCAGA
ACGGCACCCAGACTGCTGCCTGCTAGTGACAGACATCCACTTGGAAGATCGTGATTTCCA
GCCCGTGGAGCCAGCATTTGAACCTTGTACAATTAACTTTGAGTTATGATTTCCCATCTA
CATTTTCTTTGCTTTGTTTCTAGCTGAATTTTGTGTTTTATAAATCCTCTATTAAAGCAG
AAGGGTGATTATGAGTGGGTCACAGCAGCCCTTAAAAGCTGGGCCAGAAAATTTCACTAG
GTCAGTAATTTAAACTTTGGATCTTCAAAAAATAATAATGTGAAGCAAAACCAACTAAAG
TGATTCTTGCACATGAACTGTCACATGTTAAAAATGTGTTTTTTAGAGAGCCTCAGTCTT
GCTGATTTCAGACACTTTTTTCTTCTGTGTATTGCTTTTAAGAGAGCCATCAGTTAGCTA
TCAGACTTTAGGTTGATGCATTTTGTACTTAGCTGTACTGTGTGATATTTTTCATTATTT
TAGGACGCCAACACGAGACCTGTAATAAAATATGTAATGGGGTTGAAAGCTGGGGAGGAG
GATCTACTGCTGTACAGCTAATAAATCATAACGGATTAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
426-497, + strand, RNAmicro p=0.997802 |
|
648-708, + strand, RNAmicro p=0.953464 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
426-497, + strand, RNAmicro p=0.997802 |
|
648-708, + strand, RNAmicro p=0.953464 |
|
385-660, 4061782 BARC 8BOV Bos taurus cDNA clone 8BOV_12L24 5', mRNA
(gb|CK836530.1|), blast E-value=0, identity=93.91% |
|
385-660, 4103380 BARC 9BOV Bos taurus cDNA clone 9BOV24_M03 5', mRNA
(gb|CK972514.1|), blast E-value=0, identity=93.91% |
|
385-660, 1270991 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN526242.1|),
blast E-value=0, identity=93.91% |
|
385-660, LB01625.CR_O17 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT814985.1|),
blast E-value=0, identity=93.91% |
|
385-660, LB0261.CR_H20 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV878300.1|),
blast E-value=0, identity=93.91% |
|
385-660, LB02973.CR_E24 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE365473.1|),
blast E-value=0, identity=93.91% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
385-660, 4061782 BARC 8BOV Bos taurus cDNA clone 8BOV_12L24 5', mRNA
(gb|CK836530.1|), blast E-value=0, identity=93.91% |
|
385-660, 4103380 BARC 9BOV Bos taurus cDNA clone 9BOV24_M03 5', mRNA
(gb|CK972514.1|), blast E-value=0, identity=93.91% |
|
385-660, 1270991 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN526242.1|),
blast E-value=0, identity=93.91% |
|
385-660, LB01625.CR_O17 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT814985.1|),
blast E-value=0, identity=93.91% |
|
385-660, LB0261.CR_H20 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV878300.1|),
blast E-value=0, identity=93.91% |
|
385-660, LB02973.CR_E24 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE365473.1|),
blast E-value=0, identity=93.91% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
spl (0.429553) |
|
sme (0.305437) |
|
lin (0.291206) |
|
fce (0.271592) |
|
hea (0.204499) |
|
jej (0.197844) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
fat (0.147427) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
spl (0.429553) |
|
sme (0.305437) |
|
lin (0.291206) |
|
fce (0.271592) |
|
hea (0.204499) |
|
jej (0.197844) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
fat (0.147427) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
cty (0.10408) |