Non-Coding RNA Search

Ss1.1-Lym2-sn02_C06.f.5

Sequence:


               
               GGGCCGGGGCTGCCGGCCGACGCCTCTGAGCGGAAGAGGGAAGTGAAGGCGGCAGTCTGC
GGGTGCCAGCCGGGTTGGGCTTGCTAAGGTAGAGGCAGCACCGAGGGGAGGCCTTGGCCG
CCGGTCCGGATCGAGGATGTCGAAGAACACGGTGTCGTCGGCCCGGTTCCGGAAGGTAGA
CGTGGATGAGTACGACGAGAACAAGTTCGTGGACGAGGAAGACGGGGGCGACGGGCAGGC
CGGGCCCGACGAGGGCGAGGTGGACTCCTGCCTGCGGCAAGGAAACATGACAGCTGCCCT
ACAGGCAGCTCTGAAAAACCCCCCTATCAATACCAAGAGTCAGGCGGTGAAGGATCGAGC
AGGCAGCATTGTCTTGAAGGTGCTCATCTCTTTTAAAGCTAACGATATTGAAAAAGCAGT
TCAGTCCCTGGACAAGAATGGCGTGGATCTGCTAATGAAGTATATTTATAAAGGCTTTGA
GAGCCCCTCTGACAATAGCAGTGCCATGTTACTACAGTGGCACGAAAAGGCACTTGCTGC
TGGAGGAGTGGGGTCCATTGTTCGAGTCTTGACTGCAAGGAAAACCGTGTAGTCCAGCGG
GAACTGGATCTCTCCCATGGGGTGGGAGTTGCTGGTACAAAGACCAAAACAACCAAATGC
CACTGCTGCCCTTTGGCAGCATCAGTTTCTCTCAGCTTTGCCTTCTTGCTTACTTTTCAT
ATCTGTAAAGAAGAAGATTACATATCAGTTTTCCTTTCAAGAAAATTGGGATCAAATGTT
TCAATAGGAGTGTTTCATGCTCTCAGAATGATTTCAGTGATGTGTATACCAGTCTGTATA
TAGCATCATTTACATTCAAGTTTAATTGTGCAATTTTTAACCCCTATTGGCTGATGCAGG
TTTTTTTGATTTTTGTTTGTTTTGCGAGAGGGGGTTTTTTGGTTTTGGTTTTGACTAATA
ATGAGAAATTTGATCAACATTTGAGACTGGTTTCCTAACTCATTGCTAGCCAGGAAATGA
TCTTTATTAAAAAATGTTTGAGAAACTGGCAGCTAATAGCATTGCAAAACTGGACCATAC
TTCCCTTATTTAAACAAAATGTGTTTCTGGAACAAGTGGCAGCTGAACCCGACCAAGTTC
CAGCTCTTGTTTCTGCTTGCCTCCAGATTATGTGAGTTTAAGGACACTTCTTCCTCTCAG
CATCGAATAATCGTGGCCTCTTGATTTCTTTGTGGTCACCCAGGGTATAGAGCAAGGAAT
CTTGCTCTCCGCAAATGTGTCTGTAAAATGCCAGAGCCTGTTTGACATGAGCATAATACT
TTTTGTTCTAATAGTATGGCCCTATTCGGGGAAACTCCAATTCAGAAAGGTTGTAGAAAC
TATGAAGTAGTTCAAACCTGGGCAGCCAATTCTTTAGAATTATAGCGGCTGCCTTCAACG
TTCCGAGGTATATAATAGTATTTAATATGTCCTATAAATGTCTTCAGTGTTCTTCAGGGT
AATTGGGATCACAAAAGGTTTGGTTCGGATCCAAACAGATGCACATTCTGTATTTTAGCT
CAGTGTTTTTTTAAAAAAAAACGCCACACATGAAAAAAAGTGTTTACTTTGTTGGACAAA
CCAAATCCATTCTCAAAAAAATGACCGGTGCTTATGAGAAGTTATTATTCAGTAGCTCTA
AAACAAGCCACCTGAATGCTTATGACCAAGAGGGAAGTCAGACTGTATTTAGTATTTACA
TTAGACACCAGTGTCATAATCACTTGAGTTGTGTGAAAACTGGTGCAGAAATTCTGTAAA
CTCTTTGCTGTTTTTGATACCTGCTTTTTTGTTCTGTTTTGTAACAATGACAAAGTTCAG
ACAATAAAACGTCCGTGTTGAATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCGGGGCTGCCGGCCGACGCCTCTGAGCGGAAGAGGGAAGTGAAGGCGGCAGTCTGC
GGGTGCCAGCCGGGTTGGGCTTGCTAAGGTAGAGGCAGCACCGAGGGGAGGCCTTGGCCG
CCGGTCCGGATCGAGGATGTCGAAGAACACGGTGTCGTCGGCCCGGTTCCGGAAGGTAGA
CGTGGATGAGTACGACGAGAACAAGTTCGTGGACGAGGAAGACGGGGGCGACGGGCAGGC
CGGGCCCGACGAGGGCGAGGTGGACTCCTGCCTGCGGCAAGGAAACATGACAGCTGCCCT
ACAGGCAGCTCTGAAAAACCCCCCTATCAATACCAAGAGTCAGGCGGTGAAGGATCGAGC
AGGCAGCATTGTCTTGAAGGTGCTCATCTCTTTTAAAGCTAACGATATTGAAAAAGCAGT
TCAGTCCCTGGACAAGAATGGCGTGGATCTGCTAATGAAGTATATTTATAAAGGCTTTGA
GAGCCCCTCTGACAATAGCAGTGCCATGTTACTACAGTGGCACGAAAAGGCACTTGCTGC
TGGAGGAGTGGGGTCCATTGTTCGAGTCTTGACTGCAAGGAAAACCGTGTAGTCCAGCGG
GAACTGGATCTCTCCCATGGGGTGGGAGTTGCTGGTACAAAGACCAAAACAACCAAATGC
CACTGCTGCCCTTTGGCAGCATCAGTTTCTCTCAGCTTTGCCTTCTTGCTTACTTTTCAT
ATCTGTAAAGAAGAAGATTACATATCAGTTTTCCTTTCAAGAAAATTGGGATCAAATGTT
TCAATAGGAGTGTTTCATGCTCTCAGAATGATTTCAGTGATGTGTATACCAGTCTGTATA
TAGCATCATTTACATTCAAGTTTAATTGTGCAATTTTTAACCCCTATTGGCTGATGCAGG
TTTTTTTGATTTTTGTTTGTTTTGCGAGAGGGGGTTTTTTGGTTTTGGTTTTGACTAATA
ATGAGAAATTTGATCAACATTTGAGACTGGTTTCCTAACTCATTGCTAGCCAGGAAATGA
TCTTTATTAAAAAATGTTTGAGAAACTGGCAGCTAATAGCATTGCAAAACTGGACCATAC
TTCCCTTATTTAAACAAAATGTGTTTCTGGAACAAGTGGCAGCTGAACCCGACCAAGTTC
CAGCTCTTGTTTCTGCTTGCCTCCAGATTATGTGAGTTTAAGGACACTTCTTCCTCTCAG
CATCGAATAATCGTGGCCTCTTGATTTCTTTGTGGTCACCCAGGGTATAGAGCAAGGAAT
CTTGCTCTCCGCAAATGTGTCTGTAAAATGCCAGAGCCTGTTTGACATGAGCATAATACT
TTTTGTTCTAATAGTATGGCCCTATTCGGGGAAACTCCAATTCAGAAAGGTTGTAGAAAC
TATGAAGTAGTTCAAACCTGGGCAGCCAATTCTTTAGAATTATAGCGGCTGCCTTCAACG
TTCCGAGGTATATAATAGTATTTAATATGTCCTATAAATGTCTTCAGTGTTCTTCAGGGT
AATTGGGATCACAAAAGGTTTGGTTCGGATCCAAACAGATGCACATTCTGTATTTTAGCT
CAGTGTTTTTTTAAAAAAAAACGCCACACATGAAAAAAAGTGTTTACTTTGTTGGACAAA
CCAAATCCATTCTCAAAAAAATGACCGGTGCTTATGAGAAGTTATTATTCAGTAGCTCTA
AAACAAGCCACCTGAATGCTTATGACCAAGAGGGAAGTCAGACTGTATTTAGTATTTACA
TTAGACACCAGTGTCATAATCACTTGAGTTGTGTGAAAACTGGTGCAGAAATTCTGTAAA
CTCTTTGCTGTTTTTGATACCTGCTTTTTTGTTCTGTTTTGTAACAATGACAAAGTTCAG
ACAATAAAACGTCCGTGTTGAATAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56403722|emb|CAI29651.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56403722|emb|CAI29651.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               909-1025, - strand, RNAz p=0.998844
               

               
               1393-1485, - strand, RNAz p=0.992491

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               909-1025, - strand, RNAz p=0.998844
               

               
               1393-1485, - strand, RNAz p=0.992491

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               56-324, gnl|bosTau2|chrX (27754916-27755182)
               

               
               56-324, gnl|Hg17|chr1 (180336518-180333902)
               

               
               56-324, gnl|Mm7|chr12 (22330229-22329980)
               


               
               831-1485, gnl|bosTau2|chrX (27755944-27756632)
               

               
               831-1485, gnl|Hg17|chr1 (180328055-180327396)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-324, gnl|bosTau2|chrX (27754916-27755182)
               

               
               56-324, gnl|Hg17|chr1 (180336518-180333902)
               

               
               56-324, gnl|Mm7|chr12 (22330229-22329980)
               


               
               831-1485, gnl|bosTau2|chrX (27755944-27756632)
               

               
               831-1485, gnl|Hg17|chr1 (180328055-180327396)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

Help | Less info


               
               rec (2.42298)
               

               
               liv (1.9017)
               

               
               cbl (1.49237)
               

               
               mga (1.44185)
               

               
               cty (1.24896)
               

               
               tra (1.10783)
               

               
               lin (1.01922)
               

               
               spl (1.00229)
               

               
               aor (0.976372)
               

               
               ski (0.880411)
               

               
               lyg (0.798616)
               

               
               thg (0.760746)
               

               
               sin (0.69979)
               

               
               ret (0.643666)
               

               
               fat (0.58971)
               

               
               med (0.58126)
               

               
               lnt (0.569233)
               

               
               spc (0.566829)
               

               
               ill (0.526778)
               

               
               mgp (0.461361)
               

               
               lun (0.451467)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               fty (0.351679)
               

               
               nje (0.33184)
               

               
               fco (0.314416)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (2.42298)
               

               
               liv (1.9017)
               

               
               cbl (1.49237)
               

               
               mga (1.44185)
               

               
               cty (1.24896)
               

               
               tra (1.10783)
               

               
               lin (1.01922)
               

               
               spl (1.00229)
               

               
               aor (0.976372)
               

               
               ski (0.880411)
               

               
               lyg (0.798616)
               

               
               thg (0.760746)
               

               
               sin (0.69979)
               

               
               ret (0.643666)
               

               
               fat (0.58971)
               

               
               med (0.58126)
               

               
               lnt (0.569233)
               

               
               spc (0.566829)
               

               
               ill (0.526778)
               

               
               mgp (0.461361)
               

               
               lun (0.451467)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               fty (0.351679)
               

               
               nje (0.33184)
               

               
               fco (0.314416)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	909-1025, - strand, RNAz p=0.998844
	1393-1485, - strand, RNAz p=0.992491

	56-324, gnl\|bosTau2\|chrX (27754916-27755182)
	56-324, gnl\|Hg17\|chr1 (180336518-180333902)
	56-324, gnl\|Mm7\|chr12 (22330229-22329980)

	831-1485, gnl\|bosTau2\|chrX (27755944-27756632)
	831-1485, gnl\|Hg17\|chr1 (180328055-180327396)

	rec (2.42298)
	liv (1.9017)
	cbl (1.49237)
	mga (1.44185)
	cty (1.24896)
	tra (1.10783)
	lin (1.01922)
	spl (1.00229)
	aor (0.976372)
	ski (0.880411)
	lyg (0.798616)
	thg (0.760746)
	sin (0.69979)
	ret (0.643666)
	fat (0.58971)
	med (0.58126)
	lnt (0.569233)
	spc (0.566829)
	ill (0.526778)
	mgp (0.461361)
	lun (0.451467)
	amn (0.417711)
	fcc (0.39557)
	eje (0.395335)
	kid (0.389206)
	sug (0.381874)
	bla (0.373042)
	sag (0.36543)
	fty (0.351679)
	nje (0.33184)
	fco (0.314416)
	che (0.272628)
	fce (0.271592)
	clu (0.239292)
	pgl (0.236967)
	jca (0.22792)
	jej (0.197844)
	col (0.195008)
	ldo (0.194005)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	fbs (0.175346)
	duo (0.172801)
	cut (0.169924)
	nco (0.161734)
	isp (0.150376)
	hlv (0.139256)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	nbm (0.0993246)