Non-Coding RNA Search

Ss1.1-Lym2-sn05_G02.f.5

Sequence:


               
               CTCCCACCCACCAAGGAATGCAGGACCTCTGCCTGTGATGTGGATGCCGCCGACCACAAC
TTGCAGGGCACTGAGGTGGCTTAAACTCTGGGTACGGGCTGGGGCTGTTGGACAGGGCAG
GGTTCTTGGCCATGCTGGCTGGGGGGGACCTGGAGCAGCAGTGCAGCCCTGACTAGGATG
GGAGTAGCACAAGAGACCACCCTCTTCCTGCAAGAGGAGCTTCTCCTCCCACTCTGTGCC
GCTGATTGCACTCAGCGGGGCTGGGCACAGAGGCCTGACTCCCCTATGGGGCTCCCTTCT
ACCAAGCATGTGGCCTAACGGGGCCACCCCAGACCTGGACCTAGGCTATGATAGGAGGAC
CTGGCGAGGAGCCTTCAGTTCTGGCCATTCGGGACACTCCAGAAACATACTTCTGCAGGA
GACCTGAAAACATGAAACATCTAAGCAAGTAAGGTAGCACACGGCACCTGGAGGTTCTGC
TCTGAAAGCAGCTGCCACCCTGGCCACCCACACTCCCCTCTCCCAGGGGTCTTCAGGGCT
CTGCAGGGAGCTGCCCCTTCGTGTTCCTCTTATCAAATCAACTGTGTACCTGGAGGTCCT
TCCTGAAGTCTGACCTCCTTCCTTCTCGCTTCAGTTGGGGCAGATTTGATCCCTTCTGGC
CTGGCTAGACCGGCAGGAGTCATCTGAGCCTTGTTCCCTCCTTTTCCCTGGCTGACTCCT
GGTCCCCTCTCCTCTGTTTCAGGATTCAAAAACTGCTTGTCACAGACAGTTTATTTTTTA
TTAAAAAGACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCACCCACCAAGGAATGCAGGACCTCTGCCTGTGATGTGGATGCCGCCGACCACAAC
TTGCAGGGCACTGAGGTGGCTTAAACTCTGGGTACGGGCTGGGGCTGTTGGACAGGGCAG
GGTTCTTGGCCATGCTGGCTGGGGGGGACCTGGAGCAGCAGTGCAGCCCTGACTAGGATG
GGAGTAGCACAAGAGACCACCCTCTTCCTGCAAGAGGAGCTTCTCCTCCCACTCTGTGCC
GCTGATTGCACTCAGCGGGGCTGGGCACAGAGGCCTGACTCCCCTATGGGGCTCCCTTCT
ACCAAGCATGTGGCCTAACGGGGCCACCCCAGACCTGGACCTAGGCTATGATAGGAGGAC
CTGGCGAGGAGCCTTCAGTTCTGGCCATTCGGGACACTCCAGAAACATACTTCTGCAGGA
GACCTGAAAACATGAAACATCTAAGCAAGTAAGGTAGCACACGGCACCTGGAGGTTCTGC
TCTGAAAGCAGCTGCCACCCTGGCCACCCACACTCCCCTCTCCCAGGGGTCTTCAGGGCT
CTGCAGGGAGCTGCCCCTTCGTGTTCCTCTTATCAAATCAACTGTGTACCTGGAGGTCCT
TCCTGAAGTCTGACCTCCTTCCTTCTCGCTTCAGTTGGGGCAGATTTGATCCCTTCTGGC
CTGGCTAGACCGGCAGGAGTCATCTGAGCCTTGTTCCCTCCTTTTCCCTGGCTGACTCCT
GGTCCCCTCTCCTCTGTTTCAGGATTCAAAAACTGCTTGTCACAGACAGTTTATTTTTTA
TTAAAAAGACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-278, - strand, RNAz p=0.867882

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-278, - strand, RNAz p=0.867882

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr3 (10455755-10454972)
               

               
               1-792, gnl|Hg17|chr1 (152959781-152960602)
               

               
               1-792, gnl|Mm7|chr3 (88550541-88549761)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr3 (10455755-10454972)
               

               
               1-792, gnl|Hg17|chr1 (152959781-152960602)
               

               
               1-792, gnl|Mm7|chr3 (88550541-88549761)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               jej (0.197844)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-792, gnl\|bosTau2\|chr3 (10455755-10454972)
	1-792, gnl\|Hg17\|chr1 (152959781-152960602)
	1-792, gnl\|Mm7\|chr3 (88550541-88549761)

	jej (0.197844)
	col (0.195008)
	csp (0.161186)
	cag (0.151194)
	hyp (0.142837)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)