Non-Coding RNA Search

Ss1.1-Lym2-sn07_E11.f.5

Sequence:


               
               TGCAGCGGTGAATTGGATGCCATTATGCTGGGGCCCCGCGGGAAGACCTACACCTTCAAG
GGAAACTACGTGTGGACCGTGACAGATTCAGGGCTGGGTCCCTTGTTCCAAGTGTCTGCC
CTTTGGGAAGGGCTCCCACGAAACCTGGATGCTGCTGTCTACTCTCCTCGGACACAATGG
ATTCACTTCTTTAAGGGAGACAAGGTGTGGCGCTACGTTAATTTCAAGATGTCTCCGGGC
TTCCCCAAGAGGCTGAATAGGGTAGAACCCAACCTGGATGCAGCTCTTTACTGGCCTCTC
AACCAAAAGGTGTTCCTCTTTAAGGGCTCTGGATACTGGCAATGGGACGAGCTGGCCCAA
ATGGACTTCAGCAGCTACCCCAAACCAATCAAGAGGTTGTTTACCGGAGTGCCAGACCAG
CCCTCAGCTGCTATGAGTTGGCGGGATGGCCGTGTCTATTTCTTCAAAGGGAAACAGTAC
TGGCGTCTCAATCGGCAGCTTCGAGTAGAGAAAGGCTATCCCAGAGATATCGCCCACAAC
TGGATGCACTGTCACCCCCAGAACTCAGATCCCACGCCGTTGGATGGGGATACTTCTTCT
TCAGCCACAGAAACAACCTTGGATACCACATCCTCGGCCACGGATATCCCGTTGAACACT
GACAGCTCACCCAGAGATGCAGTCTTGGACATTATCCCCTCAGCCACAGTCTCCACCACC
CACTCATTCCCTGGTAATGTCACCCTCACAGAGGCCTAAGACCTCAGTCAAATGTCTCCT
GCAGGAGGAGCACTGAACCAGAGATCTCAGGCCTCTAAATGTCCCAGCTTCAGTTCCCTC
TCCCCTGTCCTCTTTCCCTCCTGGGCAGTGACTCTAACTCTGGGACAGCCCCCAATTCCT
TCCATTTCTTCCCCACACTGGATAACATTTCCAGCTGTGTTATCTACTCTCTGGAGGACA
CTGGTAGAGGAAAGGCATCCATCAGGCCTTTGGCTGACAGGAGGCAACAGCTGGGAATGC
CTGGGTCCTGTTCTTCCTAGATAAAGAGCAAGAAAACAGCATGGCCAGTAAAATGGGCAA
GGGCTTTGGAATCCTTGAGAATCACATTTACTTGCTTAGCACCCTGGGCAAGTTAATTAA
CGTCGTTGAGCCTCGGATTTCCCAAAAGCAAAATAAGGTTAATACCAATCCTGCAGGGTT
ATTGCATTAAATGAAATGCTGTATGTGAAGTGTTTGGCACATTTGTGCTTAATAAAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGCGGTGAATTGGATGCCATTATGCTGGGGCCCCGCGGGAAGACCTACACCTTCAAG
GGAAACTACGTGTGGACCGTGACAGATTCAGGGCTGGGTCCCTTGTTCCAAGTGTCTGCC
CTTTGGGAAGGGCTCCCACGAAACCTGGATGCTGCTGTCTACTCTCCTCGGACACAATGG
ATTCACTTCTTTAAGGGAGACAAGGTGTGGCGCTACGTTAATTTCAAGATGTCTCCGGGC
TTCCCCAAGAGGCTGAATAGGGTAGAACCCAACCTGGATGCAGCTCTTTACTGGCCTCTC
AACCAAAAGGTGTTCCTCTTTAAGGGCTCTGGATACTGGCAATGGGACGAGCTGGCCCAA
ATGGACTTCAGCAGCTACCCCAAACCAATCAAGAGGTTGTTTACCGGAGTGCCAGACCAG
CCCTCAGCTGCTATGAGTTGGCGGGATGGCCGTGTCTATTTCTTCAAAGGGAAACAGTAC
TGGCGTCTCAATCGGCAGCTTCGAGTAGAGAAAGGCTATCCCAGAGATATCGCCCACAAC
TGGATGCACTGTCACCCCCAGAACTCAGATCCCACGCCGTTGGATGGGGATACTTCTTCT
TCAGCCACAGAAACAACCTTGGATACCACATCCTCGGCCACGGATATCCCGTTGAACACT
GACAGCTCACCCAGAGATGCAGTCTTGGACATTATCCCCTCAGCCACAGTCTCCACCACC
CACTCATTCCCTGGTAATGTCACCCTCACAGAGGCCTAAGACCTCAGTCAAATGTCTCCT
GCAGGAGGAGCACTGAACCAGAGATCTCAGGCCTCTAAATGTCCCAGCTTCAGTTCCCTC
TCCCCTGTCCTCTTTCCCTCCTGGGCAGTGACTCTAACTCTGGGACAGCCCCCAATTCCT
TCCATTTCTTCCCCACACTGGATAACATTTCCAGCTGTGTTATCTACTCTCTGGAGGACA
CTGGTAGAGGAAAGGCATCCATCAGGCCTTTGGCTGACAGGAGGCAACAGCTGGGAATGC
CTGGGTCCTGTTCTTCCTAGATAAAGAGCAAGAAAACAGCATGGCCAGTAAAATGGGCAA
GGGCTTTGGAATCCTTGAGAATCACATTTACTTGCTTAGCACCCTGGGCAAGTTAATTAA
CGTCGTTGAGCCTCGGATTTCCCAAAAGCAAAATAAGGTTAATACCAATCCTGCAGGGTT
ATTGCATTAAATGAAATGCTGTATGTGAAGTGTTTGGCACATTTGTGCTTAATAAAGGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61861962|ref|XP_584221.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861962|ref|XP_584221.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               734-825, - strand, RNAz p=0.999753
               

               
               918-1033, - strand, RNAz p=0.760117

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               734-825, - strand, RNAz p=0.999753
               

               
               918-1033, - strand, RNAz p=0.760117

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               31-197, gnl|bosTau2|chr5 (35037882-35038048)
               

               
               31-197, gnl|Hg17|chr12 (54518059-54517893)
               

               
               31-197, gnl|Mm7|chr10 (128299894-128300060)
               


               
               602-1256, gnl|bosTau2|chr5 (35038818-35039468)
               

               
               602-1256, gnl|Hg17|chr12 (54517137-54516497)
               

               
               602-1256, gnl|Mm7|chr10 (128300765-128301586)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-197, gnl|bosTau2|chr5 (35037882-35038048)
               

               
               31-197, gnl|Hg17|chr12 (54518059-54517893)
               

               
               31-197, gnl|Mm7|chr10 (128299894-128300060)
               


               
               602-1256, gnl|bosTau2|chr5 (35038818-35039468)
               

               
               602-1256, gnl|Hg17|chr12 (54517137-54516497)
               

               
               602-1256, gnl|Mm7|chr10 (128300765-128301586)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cli (0.305623)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	734-825, - strand, RNAz p=0.999753
	918-1033, - strand, RNAz p=0.760117

	31-197, gnl\|bosTau2\|chr5 (35037882-35038048)
	31-197, gnl\|Hg17\|chr12 (54518059-54517893)
	31-197, gnl\|Mm7\|chr10 (128299894-128300060)

	602-1256, gnl\|bosTau2\|chr5 (35038818-35039468)
	602-1256, gnl\|Hg17\|chr12 (54517137-54516497)
	602-1256, gnl\|Mm7\|chr10 (128300765-128301586)

	cli (0.305623)
	cag (0.151194)
	csk (0.140746)
	cly (0.120642)
	eru (0.120048)