Non-Coding RNA Search

Ss1.1-Lym2-sn08_D02.f.5

Sequence:


               
               GCCGCGAGGAGCAGGCTGTGCTGCTGGTGCGTCGGGACCGAGATGGGCAGCACTCATGGG
TGCCACGGGGCAGGGGAAGTGGGGGCTCGGGCAGGAGCAGTCCCCGGACTCCCCGTGCCC
ACAGCCCTGCAGCCCCCCGGCCTCCTCGGGTTCCCAGCCCCAGTCCAGAGTTGAGCTCTA
CCCCTGCCAGTGTTTTCCGCACCCCACTGCAGCTTGACCCAAAGCAGGAGCAGCAACTAT
TCCGACGCCTGGAAGAGGAGTTCCTGGCCAACGCCCGAGCCCTTGAGGCTGCTGCTGGTG
GGACCTCCACTGGACCAGCCCCTGACCCGATTCGGGCCCCAGACCCTCCAGCTCCTGATT
CCGCCTACTGTTCCTCCAGCTCCTCCTCTTCATCCCTGAGCATCCTGGGTAGCAAGTGTG
GCCAACCTGGGGACTCTGGAAGGATGGCCAATGGACTGCCTGGTCCCCGAGGCCCAGCCC
TGTCCAGCTCTTCTGATGAAGGCAGCCCTTGCCCTGGTTTAGGGGGTGCACCAGATGCTC
CTGGGAGCCCCCTGACTGGCCCAGAGCCCCCCAGGACCTGGGCGCGAGGCCGGATGGACA
CACAGCCTGACCGAAAACCCTCACGCATCCCCACGCCAAGGGGCCCCCGCCGCCCATCTG
GACCCACAGAGCCCGGGGCCTGGCCTGCTCTGCACTCGGTCAGCCCAAGGGCAGAACCGG
ATTCCTGGATGTGATGGACCAGCCCACTGCTCCCATTCCCACATTCCTTCTCCTTTTCCT
TTGTGGCCTTAACCCTTCTGCATCAGGGAGCCCCCCTTGCCTCTTGGGGACCAGACCTCA
TGGGACCAGACCCCTTGGGACCACATGGCACAATGGCACCTCTCTTGTACATTCCGGTTG
GGGGATGAGCATTGCTATTTAATTACTAATATTATTGAATGCCTTAGAGGAGGTGGGCCA
GCCCAATGAGGACCCATGCTGAGGTCCTGTGGCCCTGCTGAGCCTGACAGTAAAGTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCGAGGAGCAGGCTGTGCTGCTGGTGCGTCGGGACCGAGATGGGCAGCACTCATGGG
TGCCACGGGGCAGGGGAAGTGGGGGCTCGGGCAGGAGCAGTCCCCGGACTCCCCGTGCCC
ACAGCCCTGCAGCCCCCCGGCCTCCTCGGGTTCCCAGCCCCAGTCCAGAGTTGAGCTCTA
CCCCTGCCAGTGTTTTCCGCACCCCACTGCAGCTTGACCCAAAGCAGGAGCAGCAACTAT
TCCGACGCCTGGAAGAGGAGTTCCTGGCCAACGCCCGAGCCCTTGAGGCTGCTGCTGGTG
GGACCTCCACTGGACCAGCCCCTGACCCGATTCGGGCCCCAGACCCTCCAGCTCCTGATT
CCGCCTACTGTTCCTCCAGCTCCTCCTCTTCATCCCTGAGCATCCTGGGTAGCAAGTGTG
GCCAACCTGGGGACTCTGGAAGGATGGCCAATGGACTGCCTGGTCCCCGAGGCCCAGCCC
TGTCCAGCTCTTCTGATGAAGGCAGCCCTTGCCCTGGTTTAGGGGGTGCACCAGATGCTC
CTGGGAGCCCCCTGACTGGCCCAGAGCCCCCCAGGACCTGGGCGCGAGGCCGGATGGACA
CACAGCCTGACCGAAAACCCTCACGCATCCCCACGCCAAGGGGCCCCCGCCGCCCATCTG
GACCCACAGAGCCCGGGGCCTGGCCTGCTCTGCACTCGGTCAGCCCAAGGGCAGAACCGG
ATTCCTGGATGTGATGGACCAGCCCACTGCTCCCATTCCCACATTCCTTCTCCTTTTCCT
TTGTGGCCTTAACCCTTCTGCATCAGGGAGCCCCCCTTGCCTCTTGGGGACCAGACCTCA
TGGGACCAGACCCCTTGGGACCACATGGCACAATGGCACCTCTCTTGTACATTCCGGTTG
GGGGATGAGCATTGCTATTTAATTACTAATATTATTGAATGCCTTAGAGGAGGTGGGCCA
GCCCAATGAGGACCCATGCTGAGGTCCTGTGGCCCTGCTGAGCCTGACAGTAAAGTTTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               747-863, - strand, RNAz p=0.792875

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               747-863, - strand, RNAz p=0.792875

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1019, gnl|bosTau2|chr17 (39343506-39344513)
               

               
               1-1019, gnl|Hg17|chr22 (28032307-28033320)
               

               
               1-1019, gnl|Mm7|chr11 (5013518-5012513)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1019, gnl|bosTau2|chr17 (39343506-39344513)
               

               
               1-1019, gnl|Hg17|chr22 (28032307-28033320)
               

               
               1-1019, gnl|Mm7|chr11 (5013518-5012513)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fbs (0.526039)
               

               
               col (0.195008)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               col (0.195008)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-1019, gnl\|bosTau2\|chr17 (39343506-39344513)
	1-1019, gnl\|Hg17\|chr22 (28032307-28033320)
	1-1019, gnl\|Mm7\|chr11 (5013518-5012513)

	fbs (0.526039)
	col (0.195008)
	nmm (0.132802)
	ese (0.126502)
	jca (0.11396)
	jej (0.0989218)