Non-Coding RNA Search

Ss1.1-Lym2-sn09_C02.f.5

Sequence:


               
               ATGGTGGCAAAAAACTGCGGGCAGTGTCTCCTTTTCTTAAGGAGGTGGATGCCAAGGAGT
GTGGGACCAAGTCTGTAGGGCCTGGCTTGGCTGTCTCCTGCCTGCTGGGCCCATCCCTAG
GGCCCACCTTCCCAGAGGCCTACAGAGGTACCATGCTGCGCTGCCCACTGAACTTCACTG
GCACCCCAGACCCCTTAAAGGGCCAGGCCCCACTCCCCTTCAGCCCCCTGGTCATCCCGG
CCTTCCCGGCCCACCTCCTGGCCACTACAGCGCCCTCGCCCATGGCCGCTGGCCTCATGC
ACTTCCCCCCAGCATCTTTCGACAGTGCCCTTCGCCACAGACTTTGTCCGGCCTCGTCTG
CGTGGCACGTCCCACCTGCCACAACCTATGCAGCGCCCCACTTCTCTTTCCACCTCAACA
CCAAGCTGTAGGCCTGAGCCCGCAGTGCTGTGATGCAGTGCGGGGTCCGATGCGGCCCGG
GATGGGGAGGCACTGCCGGAAGCTCTGGGCTGGAGCCCCCTTCTCAGGAGAGCTTGGCTG
TGCCTAAGGCAGGGATGTCGCCCTGGCTGGGCAGCCTGGCACAAAGAGAGGCAGTGGGAA
AACTGAGTTTCTCTCTCAAGGAGGCAGCCGGAGCCTGAGGACCATGGGCCCCATGGTTGC
AAGGCCTTGGGAGAAGACAGTGCAGGGCCGACCGCTCCTGGCCAGGGCCCCAGAGCAGAG
GCCCGCAGTGGGGTGAAGGGCCAGGGGGCTGGTCAGCAGCTTGAGGTGTCCAGGCTGCCC
ATGGAAAATCCAATAAAATGCCTGTGGATTCACGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTGGCAAAAAACTGCGGGCAGTGTCTCCTTTTCTTAAGGAGGTGGATGCCAAGGAGT
GTGGGACCAAGTCTGTAGGGCCTGGCTTGGCTGTCTCCTGCCTGCTGGGCCCATCCCTAG
GGCCCACCTTCCCAGAGGCCTACAGAGGTACCATGCTGCGCTGCCCACTGAACTTCACTG
GCACCCCAGACCCCTTAAAGGGCCAGGCCCCACTCCCCTTCAGCCCCCTGGTCATCCCGG
CCTTCCCGGCCCACCTCCTGGCCACTACAGCGCCCTCGCCCATGGCCGCTGGCCTCATGC
ACTTCCCCCCAGCATCTTTCGACAGTGCCCTTCGCCACAGACTTTGTCCGGCCTCGTCTG
CGTGGCACGTCCCACCTGCCACAACCTATGCAGCGCCCCACTTCTCTTTCCACCTCAACA
CCAAGCTGTAGGCCTGAGCCCGCAGTGCTGTGATGCAGTGCGGGGTCCGATGCGGCCCGG
GATGGGGAGGCACTGCCGGAAGCTCTGGGCTGGAGCCCCCTTCTCAGGAGAGCTTGGCTG
TGCCTAAGGCAGGGATGTCGCCCTGGCTGGGCAGCCTGGCACAAAGAGAGGCAGTGGGAA
AACTGAGTTTCTCTCTCAAGGAGGCAGCCGGAGCCTGAGGACCATGGGCCCCATGGTTGC
AAGGCCTTGGGAGAAGACAGTGCAGGGCCGACCGCTCCTGGCCAGGGCCCCAGAGCAGAG
GCCCGCAGTGGGGTGAAGGGCCAGGGGGCTGGTCAGCAGCTTGAGGTGTCCAGGCTGCCC
ATGGAAAATCCAATAAAATGCCTGTGGATTCACGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879371|ref|XP_594290.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879371|ref|XP_594290.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               86-245, - strand, RNAz p=0.913822
               

               
               406-520, + strand, RNAz p=0.805109

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-245, - strand, RNAz p=0.913822
               

               
               406-520, + strand, RNAz p=0.805109

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC067301, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC067301, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-751, gnl|bosTau2|chr11 (1546714-1545992)
               

               
               7-751, gnl|Hg17|chr2 (96639506-96640196)
               

               
               7-751, gnl|Mm7|chr1 (36561163-36561856)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-751, gnl|bosTau2|chr11 (1546714-1545992)
               

               
               7-751, gnl|Hg17|chr2 (96639506-96640196)
               

               
               7-751, gnl|Mm7|chr1 (36561163-36561856)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cly (0.241284)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

	86-245, - strand, RNAz p=0.913822
	406-520, + strand, RNAz p=0.805109

	7-751, gnl\|bosTau2\|chr11 (1546714-1545992)
	7-751, gnl\|Hg17\|chr2 (96639506-96640196)
	7-751, gnl\|Mm7\|chr1 (36561163-36561856)