Non-Coding RNA Search

Ss1.1-Lym2-sn10_B09.f.5

Sequence:


               
               CAACTGGATAGGCTGCAACGTCTCCGCCTACCAAAGCCGCAACGCCCGCGAGTTTCTCCA
GTGTGTGGAGAAGGCCTTAGAAGACATGTTTGATGCCTTCGAAGGCAAAGCCATCAAAAC
TTAGCTTTGGGGTGGGGGAAAAGCCTCTGTTTCTTCATCAGCTTAGAAATTAGGGCCTCT
GTAGCCAGTAGGTGCTATTCTCTGACTAATAAAACTAATCACGAGGTGCCCGAGCACCAG
GGCTATCCGGTTTGAGCTTAAAAACCATCGTTTTAGGACTTCCCATCGTGGTGCAGCGGA
AACGAATCCGACTAGGAACGATGAGGTTGCGGGTTCGGTCCCTGGCCTTGCTCAGTGGGT
TGAGGATCCGGCATTGCCGTGAGCTGTGGTGTAGGTCGCAGACACGGCTCGGATCCTGAG
TTGCTGTGGCTCTGGTGCAGGCCGGCAGCAACAGCTCCAAATACAACCCTGTCCTGGAAA
CCTCCATATGCCTCAGGTGCAGCCCTAAAAAGACAAAACAAAAAACAAAACAAAAACCAT
GGTTTTAAAGCTAAATGTGTAATTTCCAAATGGAACTAGACAACAACCAAAAAGAATATG
AGATTTAGTTTTAAGGACATTTAATCAGGCGGTAAGATGTGGAAAATAACTCAGGTGTAT
TTATTGTTGAAGCAAAAATAAAATGTAATTCTTGCTTGGAGGTGGTTCCTCTTGGGTGGG
TTTTTTTGGGTTTTGTTTTTTTTTTTAATTGTTTTAACTTAATTACCTAATCCCATGAAG
AACTTCCCACTGGTAAATTCAGTAAGTGCGGATGATAGGAAGTACCTCCTGGCCCGGGCT
CTTCAGGTAATGGTGGGAAACAAGCTTTCATCTCTCCTGTAAACTTGCTTCTCTTTCCTA
GGATAGCCTTTCTTTAAAAATCCTCTTCGTTTTTCTCAGGAGTAAACTGCTACTGCTTGA
TTCTGATAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTGGATAGGCTGCAACGTCTCCGCCTACCAAAGCCGCAACGCCCGCGAGTTTCTCCA
GTGTGTGGAGAAGGCCTTAGAAGACATGTTTGATGCCTTCGAAGGCAAAGCCATCAAAAC
TTAGCTTTGGGGTGGGGGAAAAGCCTCTGTTTCTTCATCAGCTTAGAAATTAGGGCCTCT
GTAGCCAGTAGGTGCTATTCTCTGACTAATAAAACTAATCACGAGGTGCCCGAGCACCAG
GGCTATCCGGTTTGAGCTTAAAAACCATCGTTTTAGGACTTCCCATCGTGGTGCAGCGGA
AACGAATCCGACTAGGAACGATGAGGTTGCGGGTTCGGTCCCTGGCCTTGCTCAGTGGGT
TGAGGATCCGGCATTGCCGTGAGCTGTGGTGTAGGTCGCAGACACGGCTCGGATCCTGAG
TTGCTGTGGCTCTGGTGCAGGCCGGCAGCAACAGCTCCAAATACAACCCTGTCCTGGAAA
CCTCCATATGCCTCAGGTGCAGCCCTAAAAAGACAAAACAAAAAACAAAACAAAAACCAT
GGTTTTAAAGCTAAATGTGTAATTTCCAAATGGAACTAGACAACAACCAAAAAGAATATG
AGATTTAGTTTTAAGGACATTTAATCAGGCGGTAAGATGTGGAAAATAACTCAGGTGTAT
TTATTGTTGAAGCAAAAATAAAATGTAATTCTTGCTTGGAGGTGGTTCCTCTTGGGTGGG
TTTTTTTGGGTTTTGTTTTTTTTTTTAATTGTTTTAACTTAATTACCTAATCCCATGAAG
AACTTCCCACTGGTAAATTCAGTAAGTGCGGATGATAGGAAGTACCTCCTGGCCCGGGCT
CTTCAGGTAATGGTGGGAAACAAGCTTTCATCTCTCCTGTAAACTTGCTTCTCTTTCCTA
GGATAGCCTTTCTTTAAAAATCCTCTTCGTTTTTCTCAGGAGTAAACTGCTACTGCTTGA
TTCTGATAGTCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.754359
               

               
               650-807, + strand, RNAz p=0.89769
               

               
               662-774, - strand, RNAz p=0.985724

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.754359
               

               
               650-807, + strand, RNAz p=0.89769
               

               
               662-774, - strand, RNAz p=0.985724

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-275, gnl|bosTau2|chr12 (48412141-48411870)
               

               
               1-275, gnl|Hg17|chr1 (53391165-53391737)
               

               
               1-275, gnl|Mm7|chr4 (107280794-107280544)
               


               
               533-971, gnl|bosTau2|chr12 (48411884-48411474)
               

               
               533-971, gnl|canFam2|chr5 (58720363-58720026)
               

               
               533-971, gnl|dasNov1|scaffold_7367 (43523-43206)
               

               
               533-971, gnl|echTel1|scaffold_287032 (41355-41042)
               

               
               533-971, gnl|hg17|chr1 (53391638-53391977)
               

               
               533-971, gnl|Hg17|chr1 (53391723-53392112)
               

               
               533-971, gnl|mm7|chr4 (107280630-107280349)
               

               
               533-971, gnl|oryCun1|scaffold_202384 (87940-87662)
               

               
               533-971, gnl|panTro1|chr1 (51636177-51636516)
               

               
               533-971, gnl|rheMac2|chr1 (56093371-56093714)
               

               
               533-971, gnl|rn3|chr5 (129013119-129012835)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-275, gnl|bosTau2|chr12 (48412141-48411870)
               

               
               1-275, gnl|Hg17|chr1 (53391165-53391737)
               

               
               1-275, gnl|Mm7|chr4 (107280794-107280544)
               


               
               533-971, gnl|bosTau2|chr12 (48411884-48411474)
               

               
               533-971, gnl|canFam2|chr5 (58720363-58720026)
               

               
               533-971, gnl|dasNov1|scaffold_7367 (43523-43206)
               

               
               533-971, gnl|echTel1|scaffold_287032 (41355-41042)
               

               
               533-971, gnl|hg17|chr1 (53391638-53391977)
               

               
               533-971, gnl|Hg17|chr1 (53391723-53392112)
               

               
               533-971, gnl|mm7|chr4 (107280630-107280349)
               

               
               533-971, gnl|oryCun1|scaffold_202384 (87940-87662)
               

               
               533-971, gnl|panTro1|chr1 (51636177-51636516)
               

               
               533-971, gnl|rheMac2|chr1 (56093371-56093714)
               

               
               533-971, gnl|rn3|chr5 (129013119-129012835)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pro (0.512033)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1-119, - strand, RNAz p=0.754359
	650-807, + strand, RNAz p=0.89769
	662-774, - strand, RNAz p=0.985724

	1-275, gnl\|bosTau2\|chr12 (48412141-48411870)
	1-275, gnl\|Hg17\|chr1 (53391165-53391737)
	1-275, gnl\|Mm7\|chr4 (107280794-107280544)

	533-971, gnl\|bosTau2\|chr12 (48411884-48411474)
	533-971, gnl\|canFam2\|chr5 (58720363-58720026)
	533-971, gnl\|dasNov1\|scaffold_7367 (43523-43206)
	533-971, gnl\|echTel1\|scaffold_287032 (41355-41042)
	533-971, gnl\|hg17\|chr1 (53391638-53391977)
	533-971, gnl\|Hg17\|chr1 (53391723-53392112)
	533-971, gnl\|mm7\|chr4 (107280630-107280349)
	533-971, gnl\|oryCun1\|scaffold_202384 (87940-87662)
	533-971, gnl\|panTro1\|chr1 (51636177-51636516)
	533-971, gnl\|rheMac2\|chr1 (56093371-56093714)
	533-971, gnl\|rn3\|chr5 (129013119-129012835)

	pro (0.512033)
	cje (0.330469)
	sme (0.305437)
	lin (0.291206)
	ssp (0.271039)
	hea (0.204499)
	col (0.195008)
	sto (0.179824)
	cly (0.120642)
	jca (0.11396)
	eje (0.0988338)