Ss1.1-Lym2-sn10_H05.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGCCTCGAGGAGGGGAGGTGGCACCATGAGCACCCGCACGGCCGCCACCCGCCAGACC TGCTGCTGCTTCAATGTCCGCATCGCCACCACTGCTCTGGCCGTCTACCATGTGATCATG AGTGTATTGCTGTTCATTGAGCACTCAGTGGAAGTGGCCCACGGCAAGGCTTCCTGCAAG TTCTCGAAGTCGGGCTATCTCAGGATTGCGGAACTCATCTCCAGCTTCCTGCTCATCACC ATGCTCTTTGTCATCAGCTTGAGCCTGCTGATCGGTGTGGTCAAGAATCGAGAGAGGTAC CTGCTGCCCTTCCTATCGCTGCAAATCATGGACTTCCTCCTGTGCCTGCTCACCCTGCTG GGCTCCTACATTGAGCTACCAGCCTACCTCAAATTCGCCTCCAGGAGCAGCAGCCGGGCT AGCCCCTCCAAGGTCCCACTGATGACACTGCAGCTGTTGGACTTCTGCCTGAGCATCTTG ACCCTCTGCAGCTCCTACATGGAAGTGCCCACCTATCTCAACTTCAAGTCCATGAACCAC ATGAATTACCTCCCCAGCCAGGAGGGTGTGGCTCACAGCCAGTTCGTCAAGATGATGGTC ATCTTCTCCGTCGCCTTCATCACGGTCCTCATCCTGAAGATCTACATGTTCAAGTGTGTG TGGCGATGCTACAGATTCATCAAGTACATGAACTCGGCCGAGGAGAGGAGTGGCTCCAAG ATGCTGCCGAAGGTGGTCCTGCCATCTTATGAGGAAGCTGTGTCTCTGCCGTACAAGATT CCAGAAGGGGGCCCAGCGCCACCCCCATACTCAGAGGCATGACGCACGCCAGGCCCCAGC CCTGGTGCTGGGAAGGGCGGAGCTGACTTGCAATCCGCTTCTTCGCTTTGGTGGCCCCTG TGGCCTGGGTGAACCACCTGGCTGCCTTCAGGACAATCCGCTTGTGTCCCCCTCGCTGGC CTGCTTTTCCTGCCGGGCCTGGGAGATGCTCACAATTGGGTCAACCCCTTTAGGCTGAAT GACTCCTTGGGTCGCTCAAAAATTCAGTCCCACAGCACTCGGCTTCTTTTGATCAGCTCT GATATCGGTTTAAATGACTGGTCATTCTAAAGTCAGTGAGTTTGGTTAGACAGCTCTCAA CTCACCCAGTTTTACCAAGTGGCTGATAAATAAAAGACACACGTGTCAGTTCAGTGAAAA TAATTTGGTCGAACACCAAAGTCCGTGGCGTTGGTTTGTAAACAGTTGTCAACTCACAGA GCAATTTGGTCAAGACACCATCAATTAGCCCTCCCCGCCAAATGCCTGTATCCAGTTTCT TCTAATAGCTCGCTTAACAGTGATTACGTCAGCCAACCATCAGTTAATTGAGAAGAGCGA TAACATCCAATAATTAAAAAAAAATCAAGTTCATCCCCAAACTATTCGGTTCAATCGAAT CCAATAACCAGCTGCGTACTCTGGTCAATTCAGTACTTCTGAGTCCTGAATAATGGTTCC TTCAAATGAAAATTCAAGTCAGACAGTTGCCACACTGGCATTCCAGAGCTAGTATCAGGA AATTAACTGTTGTTTCGGTCATCAAACAGTCCCTTCGAACACATAATAGTTTTGCCAAAG AGTTGTCATCATCAACCACCAGTCACACGTGGCCAGAGTGGCCACATAGCAATGGAATGG GTTCCATGAAAGGGGTCTCCTCAACCAAGGTTGTCTCTAGTAAGGAGCTGTTAGCCCATC CCGCAGGCCAACCCATCCACCACCAGTGCCGTGACAGGGGACCCAGTTCTGCCTGATGCT TGTGGTCTGGCAGAAATTCAGCCTTGAAATCAGGCAACTCCATTTGTGGGACTAAATCCA CAGGTTAGTTCAGTCAGAACAAGGCAAACCCTTTGCTGGCGCAGACCCCACCCCGGGGAC TTATGCTGGTGGTGGATGTAGGGAAAATTTTGGTCCCCGCACCCCCTCTTTCACCTGCTT TCCTGAGGGGGCCGGGATTCCCAAGGGTGCTGACCCAAAGGCAGAGTAAGGCCACAGAGG CAGGTTCTCTGGGGTCTGTGAGGGGGGACAGAGGGAGAGGGCTGTGCAAGGGGCTCCCCA CCAACACCCCTTGTGTCATTGCTTTGTGTGATGGGGAGGAAGTTTCAATAAAGCAGCAAC ACGCTTCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGCCTCGAGGAGGGGAGGTGGCACCATGAGCACCCGCACGGCCGCCACCCGCCAGACC TGCTGCTGCTTCAATGTCCGCATCGCCACCACTGCTCTGGCCGTCTACCATGTGATCATG AGTGTATTGCTGTTCATTGAGCACTCAGTGGAAGTGGCCCACGGCAAGGCTTCCTGCAAG TTCTCGAAGTCGGGCTATCTCAGGATTGCGGAACTCATCTCCAGCTTCCTGCTCATCACC ATGCTCTTTGTCATCAGCTTGAGCCTGCTGATCGGTGTGGTCAAGAATCGAGAGAGGTAC CTGCTGCCCTTCCTATCGCTGCAAATCATGGACTTCCTCCTGTGCCTGCTCACCCTGCTG GGCTCCTACATTGAGCTACCAGCCTACCTCAAATTCGCCTCCAGGAGCAGCAGCCGGGCT AGCCCCTCCAAGGTCCCACTGATGACACTGCAGCTGTTGGACTTCTGCCTGAGCATCTTG ACCCTCTGCAGCTCCTACATGGAAGTGCCCACCTATCTCAACTTCAAGTCCATGAACCAC ATGAATTACCTCCCCAGCCAGGAGGGTGTGGCTCACAGCCAGTTCGTCAAGATGATGGTC ATCTTCTCCGTCGCCTTCATCACGGTCCTCATCCTGAAGATCTACATGTTCAAGTGTGTG TGGCGATGCTACAGATTCATCAAGTACATGAACTCGGCCGAGGAGAGGAGTGGCTCCAAG ATGCTGCCGAAGGTGGTCCTGCCATCTTATGAGGAAGCTGTGTCTCTGCCGTACAAGATT CCAGAAGGGGGCCCAGCGCCACCCCCATACTCAGAGGCATGACGCACGCCAGGCCCCAGC CCTGGTGCTGGGAAGGGCGGAGCTGACTTGCAATCCGCTTCTTCGCTTTGGTGGCCCCTG TGGCCTGGGTGAACCACCTGGCTGCCTTCAGGACAATCCGCTTGTGTCCCCCTCGCTGGC CTGCTTTTCCTGCCGGGCCTGGGAGATGCTCACAATTGGGTCAACCCCTTTAGGCTGAAT GACTCCTTGGGTCGCTCAAAAATTCAGTCCCACAGCACTCGGCTTCTTTTGATCAGCTCT GATATCGGTTTAAATGACTGGTCATTCTAAAGTCAGTGAGTTTGGTTAGACAGCTCTCAA CTCACCCAGTTTTACCAAGTGGCTGATAAATAAAAGACACACGTGTCAGTTCAGTGAAAA TAATTTGGTCGAACACCAAAGTCCGTGGCGTTGGTTTGTAAACAGTTGTCAACTCACAGA GCAATTTGGTCAAGACACCATCAATTAGCCCTCCCCGCCAAATGCCTGTATCCAGTTTCT TCTAATAGCTCGCTTAACAGTGATTACGTCAGCCAACCATCAGTTAATTGAGAAGAGCGA TAACATCCAATAATTAAAAAAAAATCAAGTTCATCCCCAAACTATTCGGTTCAATCGAAT CCAATAACCAGCTGCGTACTCTGGTCAATTCAGTACTTCTGAGTCCTGAATAATGGTTCC TTCAAATGAAAATTCAAGTCAGACAGTTGCCACACTGGCATTCCAGAGCTAGTATCAGGA AATTAACTGTTGTTTCGGTCATCAAACAGTCCCTTCGAACACATAATAGTTTTGCCAAAG AGTTGTCATCATCAACCACCAGTCACACGTGGCCAGAGTGGCCACATAGCAATGGAATGG GTTCCATGAAAGGGGTCTCCTCAACCAAGGTTGTCTCTAGTAAGGAGCTGTTAGCCCATC CCGCAGGCCAACCCATCCACCACCAGTGCCGTGACAGGGGACCCAGTTCTGCCTGATGCT TGTGGTCTGGCAGAAATTCAGCCTTGAAATCAGGCAACTCCATTTGTGGGACTAAATCCA CAGGTTAGTTCAGTCAGAACAAGGCAAACCCTTTGCTGGCGCAGACCCCACCCCGGGGAC TTATGCTGGTGGTGGATGTAGGGAAAATTTTGGTCCCCGCACCCCCTCTTTCACCTGCTT TCCTGAGGGGGCCGGGATTCCCAAGGGTGCTGACCCAAAGGCAGAGTAAGGCCACAGAGG CAGGTTCTCTGGGGTCTGTGAGGGGGGACAGAGGGAGAGGGCTGTGCAAGGGGCTCCCCA CCAACACCCCTTGTGTCATTGCTTTGTGTGATGGGGAGGAAGTTTCAATAAAGCAGCAAC ACGCTTCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 811-929, - strand, RNAz p=0.789175 | |
| 1047-1166, - strand, RNAz p=0.983325 | |
| 1925-2167, + strand, RNAz p=0.980342 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 811-929, - strand, RNAz p=0.789175 | |
| 1047-1166, - strand, RNAz p=0.983325 | |
| 1925-2167, + strand, RNAz p=0.980342 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_006762, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr2 (74996641-74996527) | |
| 1-114, gnl|canFam2|chr2 (73080385-73079999) | |
| 1-114, gnl|dasNov1|scaffold_40759 (1497-1874) | |
| 1-114, gnl|echTel1|scaffold_312093 (40642-41124) | |
| 1-114, gnl|hg17|chr1 (30899400-30899791) | |
| 1-114, gnl|Hg17|chr1 (30899714-30899599) | |
| 1-114, gnl|loxAfr1|scaffold_7580 (99929-99519) | |
| 1-114, gnl|mm7|chr4 (130128037-130127667) | |
| 1-114, gnl|Mm7|chr4 (130127739-130127853) | |
| 1-114, gnl|oryCun1|scaffold_212127 (45106-45506) | |
| 1-114, gnl|panTro1|chr1 (31531474-31531865) | |
| 1-114, gnl|rheMac2|chr1 (33522104-33522487) | |
| 1-114, gnl|rn3|chr5 (149786213-149785850) | |
| 284-418, gnl|bosTau2|chr2 (74977924-74977790) | |
| 284-418, gnl|canFam2|chr2 (73099353-73099192) | |
| 284-418, gnl|dasNov1|scaffold_193696 (772-617) | |
| 284-418, gnl|echTel1|scaffold_312093 (14678-14832) | |
| 284-418, gnl|galGal2|chr23 (261978-262129) | |
| 284-418, gnl|hg17|chr1 (30881733-30881892) | |
| 284-418, gnl|Hg17|chr1 (30881879-30881751) | |
| 284-418, gnl|mm7|chr4 (130143193-130143043) | |
| 284-418, gnl|Mm7|chr4 (130143054-130143179) | |
| 284-418, gnl|monDom2|scaffold_43 (1635058-1635224) | |
| 284-418, gnl|oryCun1|scaffold_198923 (84644-84486) | |
| 284-418, gnl|panTro1|chr1 (31513825-31513984) | |
| 284-418, gnl|rheMac2|chr1 (33503658-33503817) | |
| 284-418, gnl|rn3|chr5 (149801132-149800982) | |
| 421-543, gnl|bosTau2|chr2 (74977087-74976965) | |
| 421-543, gnl|Hg17|chr1 (30881002-30880880) | |
| 421-543, gnl|Mm7|chr4 (130143839-130143961) | |
| 731-2167, gnl|bosTau2|chr2 (74972105-74970718) | |
| 731-2167, gnl|Hg17|chr1 (30875859-30874409) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr2 (74996641-74996527) | |
| 1-114, gnl|canFam2|chr2 (73080385-73079999) | |
| 1-114, gnl|dasNov1|scaffold_40759 (1497-1874) | |
| 1-114, gnl|echTel1|scaffold_312093 (40642-41124) | |
| 1-114, gnl|hg17|chr1 (30899400-30899791) | |
| 1-114, gnl|Hg17|chr1 (30899714-30899599) | |
| 1-114, gnl|loxAfr1|scaffold_7580 (99929-99519) | |
| 1-114, gnl|mm7|chr4 (130128037-130127667) | |
| 1-114, gnl|Mm7|chr4 (130127739-130127853) | |
| 1-114, gnl|oryCun1|scaffold_212127 (45106-45506) | |
| 1-114, gnl|panTro1|chr1 (31531474-31531865) | |
| 1-114, gnl|rheMac2|chr1 (33522104-33522487) | |
| 1-114, gnl|rn3|chr5 (149786213-149785850) | |
| 284-418, gnl|bosTau2|chr2 (74977924-74977790) | |
| 284-418, gnl|canFam2|chr2 (73099353-73099192) | |
| 284-418, gnl|dasNov1|scaffold_193696 (772-617) | |
| 284-418, gnl|echTel1|scaffold_312093 (14678-14832) | |
| 284-418, gnl|galGal2|chr23 (261978-262129) | |
| 284-418, gnl|hg17|chr1 (30881733-30881892) | |
| 284-418, gnl|Hg17|chr1 (30881879-30881751) | |
| 284-418, gnl|mm7|chr4 (130143193-130143043) | |
| 284-418, gnl|Mm7|chr4 (130143054-130143179) | |
| 284-418, gnl|monDom2|scaffold_43 (1635058-1635224) | |
| 284-418, gnl|oryCun1|scaffold_198923 (84644-84486) | |
| 284-418, gnl|panTro1|chr1 (31513825-31513984) | |
| 284-418, gnl|rheMac2|chr1 (33503658-33503817) | |
| 284-418, gnl|rn3|chr5 (149801132-149800982) | |
| 421-543, gnl|bosTau2|chr2 (74977087-74976965) | |
| 421-543, gnl|Hg17|chr1 (30881002-30880880) | |
| 421-543, gnl|Mm7|chr4 (130143839-130143961) | |
| 731-2167, gnl|bosTau2|chr2 (74972105-74970718) | |
| 731-2167, gnl|Hg17|chr1 (30875859-30874409) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| lnt (1.56539) | |
| fty (1.23088) | |
| cly (0.965135) | |
| cbl (0.803582) | |
| cag (0.755972) | |
| clu (0.598229) | |
| csp (0.483559) | |
| jca (0.45584) | |
| col (0.390016) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| med (0.348756) | |
| eli (0.303628) | |
| hyp (0.285673) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| cty (0.20816) | |
| duo (0.172801) | |
| nje (0.16592) | |
| pty (0.142714) | |
| ute (0.132784) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (1.56539) | |
| fty (1.23088) | |
| cly (0.965135) | |
| cbl (0.803582) | |
| cag (0.755972) | |
| clu (0.598229) | |
| csp (0.483559) | |
| jca (0.45584) | |
| col (0.390016) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| med (0.348756) | |
| eli (0.303628) | |
| hyp (0.285673) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| cty (0.20816) | |
| duo (0.172801) | |
| nje (0.16592) | |
| pty (0.142714) | |
| ute (0.132784) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |