Non-Coding RNA Search

Ss1.1-Lym2-sn11_E11.f.5

Sequence:


               
               GGGAAAGCATCGCTGCCCCCACTTTCTCCCCCAGCTCTGCCCTCATTTTCCATATGGGGA
CAGGACGCTCCGGGAAGGGGACAGGAGACCCCCTGCCTGGCCAGTCCCCAGCCACGGTCC
CCCCTTGCCGGGCTCGCTGTGCCCCTATGCCGTGAGGACAGGGAAGCCACCCCAGTCCAG
GACACTGATGGTGCTTGGACTCCAGCCTCTAAGGAGGACTGGCCGTGGTCCAGGAGTTAA
GGGGCTTGGGCTGGGGTGTAAGTGTCCCCCCAGCCAGTCCCTGCCCAGTGTGGGACCATG
AGGGGACGTGGGCAAGACCAAAGGCGGGAAGATGCACAGGGCCAGGGGGTGCCTGCCCAC
CCGTCACCACAGTGTTTGTGCCTTGAGCTGATGAGGCAGCCTCTGGGGTCCAGAATCCCT
GGGGGAGCGGGTCCAACACCCTGAAAGAAGGAGCAAGAAGAGTCATCTCTGCACCTCAGG
TCTCCCTCCGCCAGGGGACAGGAAGACCCGGGCACTCAGAGATGATGTCTGAGGCCGGGC
CCCTGCTGCCTTCTCGCTATTTGCAATAGATGTAAATATGATCAATAAACCTTTGGAAGA
GCCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAAGCATCGCTGCCCCCACTTTCTCCCCCAGCTCTGCCCTCATTTTCCATATGGGGA
CAGGACGCTCCGGGAAGGGGACAGGAGACCCCCTGCCTGGCCAGTCCCCAGCCACGGTCC
CCCCTTGCCGGGCTCGCTGTGCCCCTATGCCGTGAGGACAGGGAAGCCACCCCAGTCCAG
GACACTGATGGTGCTTGGACTCCAGCCTCTAAGGAGGACTGGCCGTGGTCCAGGAGTTAA
GGGGCTTGGGCTGGGGTGTAAGTGTCCCCCCAGCCAGTCCCTGCCCAGTGTGGGACCATG
AGGGGACGTGGGCAAGACCAAAGGCGGGAAGATGCACAGGGCCAGGGGGTGCCTGCCCAC
CCGTCACCACAGTGTTTGTGCCTTGAGCTGATGAGGCAGCCTCTGGGGTCCAGAATCCCT
GGGGGAGCGGGTCCAACACCCTGAAAGAAGGAGCAAGAAGAGTCATCTCTGCACCTCAGG
TCTCCCTCCGCCAGGGGACAGGAAGACCCGGGCACTCAGAGATGATGTCTGAGGCCGGGC
CCCTGCTGCCTTCTCGCTATTTGCAATAGATGTAAATATGATCAATAAACCTTTGGAAGA
GCCAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               53-355, - strand, RNAz p=0.989737
               

               
               157-348, + strand, RNAz p=0.894328

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-355, - strand, RNAz p=0.989737
               

               
               157-348, + strand, RNAz p=0.894328

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_152348, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152348, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-355, gnl|bosTau2|chr19 (17368142-17368495)
               

               
               1-355, gnl|canFam2|chr9 (49199720-49200143)
               

               
               1-355, gnl|hg17|chr17 (1587889-1588313)
               

               
               1-355, gnl|Hg17|chr17 (1587995-1588346)
               

               
               1-355, gnl|loxAfr1|scaffold_87018 (1510-1942)
               

               
               1-355, gnl|mm7|chr11 (75523204-75522818)
               

               
               1-355, gnl|Mm7|chr11 (75523125-75522788)
               

               
               1-355, gnl|monDom2|scaffold_86 (2893467-2893918)
               

               
               1-355, gnl|oryCun1|scaffold_213478 (40045-40472)
               

               
               1-355, gnl|panTro1|chr19 (1730946-1731369)
               

               
               1-355, gnl|rheMac2|chr16 (1534087-1534510)
               

               
               1-355, gnl|rn3|chr10 (62771991-62771600)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-355, gnl|bosTau2|chr19 (17368142-17368495)
               

               
               1-355, gnl|canFam2|chr9 (49199720-49200143)
               

               
               1-355, gnl|hg17|chr17 (1587889-1588313)
               

               
               1-355, gnl|Hg17|chr17 (1587995-1588346)
               

               
               1-355, gnl|loxAfr1|scaffold_87018 (1510-1942)
               

               
               1-355, gnl|mm7|chr11 (75523204-75522818)
               

               
               1-355, gnl|Mm7|chr11 (75523125-75522788)
               

               
               1-355, gnl|monDom2|scaffold_86 (2893467-2893918)
               

               
               1-355, gnl|oryCun1|scaffold_213478 (40045-40472)
               

               
               1-355, gnl|panTro1|chr19 (1730946-1731369)
               

               
               1-355, gnl|rheMac2|chr16 (1534087-1534510)
               

               
               1-355, gnl|rn3|chr10 (62771991-62771600)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	53-355, - strand, RNAz p=0.989737
	157-348, + strand, RNAz p=0.894328

	1-355, gnl\|bosTau2\|chr19 (17368142-17368495)
	1-355, gnl\|canFam2\|chr9 (49199720-49200143)
	1-355, gnl\|hg17\|chr17 (1587889-1588313)
	1-355, gnl\|Hg17\|chr17 (1587995-1588346)
	1-355, gnl\|loxAfr1\|scaffold_87018 (1510-1942)
	1-355, gnl\|mm7\|chr11 (75523204-75522818)
	1-355, gnl\|Mm7\|chr11 (75523125-75522788)
	1-355, gnl\|monDom2\|scaffold_86 (2893467-2893918)
	1-355, gnl\|oryCun1\|scaffold_213478 (40045-40472)
	1-355, gnl\|panTro1\|chr19 (1730946-1731369)
	1-355, gnl\|rheMac2\|chr16 (1534087-1534510)
	1-355, gnl\|rn3\|chr10 (62771991-62771600)