Ss1.1-Lym2-sn12_G07.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAAGGGGTCATCCCTCAGGGGGTAGCCCCCAGCCCCTGCATCCCCTGCTGCCTGGTGA TCACGGACGACCGCCTCTTCACGTGCCACGAGGATTGCCAGACCAGCTTCTTCCGCTCCC TGGGCACCGCCAAGCTGGCCGACATCAGCGCCGTCTCCATTGAACCGGGCAGGGAGTACT GCGTCTTGGAGTTCTCCCAGGACAGCCAGCTGCCCCTCCCGCCCTGGGTCATCTACCTGA GCTGCTCATCTGAACTGGACCGACTCCTGTCTGCACTGAACTCCGGGTGGAAAACCATCT ACCAGGTGGACCTCCCCCACAGGGCCATCCCGGAAGCCTCCAGCAAGAAGTTCGAGGATG CCCTGAGCCTCATCCACAGTGCCTGGCAGCGGAGCGACAGCCTGTGCCGCGGCAGAGCCT CCCGGGACCCCTGGTGCTGAGGCGGAGCCGGCTGGCATCCTGGTGGGGTGGGAGAGGGAG GCCCCACCGCCGGGCAGCACGCAGTGTCATCGCCATGTCACCCAGCTGCGTGGGGCCGGG CTCCCAACCAAGTGCCCAGGCAGCAGAACCACCAAGTGGGGCTTGAGACAGGGTCTCCCT CCCAGGGATTCAGAACGAACGGGTGCTCAACACCCTGGGCTTCCTGCCCAGCAGGTGGCG ACTGGAATGTGCTGGGGGCAGAGAGTCCGAGCCCTATGGGCTCTGCAAATGCACGGCCTC CTCCCCGGGGCCACCGTCTCAGTCCACGAGGGGAGTGGAGGGACTGGGAGGGTAGGAGCC CCTTCTTCCTCCCCTGGGTCAGGGGCCCGGGCAGAGGCTTAGGCCACCCTGGGGGCCCTG AGTGCCCGGCCATCCCTGTTCATGTTTGAACACTCGCCCGGCTGGGAGGGAAGCTGGAAC GCCAAGGTCTCAGTGCATGTCCTTCCTCACTAACCCACCCCCAAGCACACTGCTGCCCGC CTGCCAGGGCCTGGGGCAGGCGCAGGGGGCCAGGCTGGCCCTCCCTGGCTACCAGGAGGC CCTGCATGTCCGAGGCCCCCTCCCCCTGCCTCCTCTGAACCTGGCCCTGCCCGCAGGACC TGGCAATCAGGCCGTCTCCTCTTGCTGGGAACAGAGCAGAGGGAGGAGGGCTTGGAGAGG AGCAAAGCCTGGTGTCTGCCAGCCTGGTGTCCCATCAGTGCCCCTCAACTGTCCCCTGCG TGGCTGATGCCGGGTCCTTCCCAAGAGGGCCTCTCGGGGAAGGGGTCAGGTGGCTTGGGT TTTGTTTTTTAAAATAAAATAGACATGTTATATTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAAGGGGTCATCCCTCAGGGGGTAGCCCCCAGCCCCTGCATCCCCTGCTGCCTGGTGA TCACGGACGACCGCCTCTTCACGTGCCACGAGGATTGCCAGACCAGCTTCTTCCGCTCCC TGGGCACCGCCAAGCTGGCCGACATCAGCGCCGTCTCCATTGAACCGGGCAGGGAGTACT GCGTCTTGGAGTTCTCCCAGGACAGCCAGCTGCCCCTCCCGCCCTGGGTCATCTACCTGA GCTGCTCATCTGAACTGGACCGACTCCTGTCTGCACTGAACTCCGGGTGGAAAACCATCT ACCAGGTGGACCTCCCCCACAGGGCCATCCCGGAAGCCTCCAGCAAGAAGTTCGAGGATG CCCTGAGCCTCATCCACAGTGCCTGGCAGCGGAGCGACAGCCTGTGCCGCGGCAGAGCCT CCCGGGACCCCTGGTGCTGAGGCGGAGCCGGCTGGCATCCTGGTGGGGTGGGAGAGGGAG GCCCCACCGCCGGGCAGCACGCAGTGTCATCGCCATGTCACCCAGCTGCGTGGGGCCGGG CTCCCAACCAAGTGCCCAGGCAGCAGAACCACCAAGTGGGGCTTGAGACAGGGTCTCCCT CCCAGGGATTCAGAACGAACGGGTGCTCAACACCCTGGGCTTCCTGCCCAGCAGGTGGCG ACTGGAATGTGCTGGGGGCAGAGAGTCCGAGCCCTATGGGCTCTGCAAATGCACGGCCTC CTCCCCGGGGCCACCGTCTCAGTCCACGAGGGGAGTGGAGGGACTGGGAGGGTAGGAGCC CCTTCTTCCTCCCCTGGGTCAGGGGCCCGGGCAGAGGCTTAGGCCACCCTGGGGGCCCTG AGTGCCCGGCCATCCCTGTTCATGTTTGAACACTCGCCCGGCTGGGAGGGAAGCTGGAAC GCCAAGGTCTCAGTGCATGTCCTTCCTCACTAACCCACCCCCAAGCACACTGCTGCCCGC CTGCCAGGGCCTGGGGCAGGCGCAGGGGGCCAGGCTGGCCCTCCCTGGCTACCAGGAGGC CCTGCATGTCCGAGGCCCCCTCCCCCTGCCTCCTCTGAACCTGGCCCTGCCCGCAGGACC TGGCAATCAGGCCGTCTCCTCTTGCTGGGAACAGAGCAGAGGGAGGAGGGCTTGGAGAGG AGCAAAGCCTGGTGTCTGCCAGCCTGGTGTCCCATCAGTGCCCCTCAACTGTCCCCTGCG TGGCTGATGCCGGGTCCTTCCCAAGAGGGCCTCTCGGGGAAGGGGTCAGGTGGCTTGGGT TTTGTTTTTTAAAATAAAATAGACATGTTATATTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 8-1296, - strand, RNAz p=0.971814 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 8-1296, - strand, RNAz p=0.971814 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 8-189, gnl|bosTau2|chr16 (38966576-38966757) | |
| 8-189, gnl|canFam2|chr2 (84765291-84765079) | |
| 8-189, gnl|danRer3|chr23 (33112268-33112459) | |
| 8-189, gnl|fr1|chrUn (105048902-105049101) | |
| 8-189, gnl|galGal2|chr21 (4072486-4072689) | |
| 8-189, gnl|hg17|chr1 (15804137-15804340) | |
| 8-189, gnl|Hg17|chr1 (15804150-15804331) | |
| 8-189, gnl|loxAfr1|scaffold_113 (195870-195658) | |
| 8-189, gnl|mm7|chr4 (141006589-141006385) | |
| 8-189, gnl|Mm7|chr4 (141006570-141006389) | |
| 8-189, gnl|monDom2|scaffold_109 (3518642-3518454) | |
| 8-189, gnl|oryCun1|scaffold_165312 (6129-5929) | |
| 8-189, gnl|panTro1|chr1 (15970308-15970511) | |
| 8-189, gnl|rheMac2|chr1 (18518152-18518355) | |
| 8-189, gnl|rn3|chr5 (160539207-160539003) | |
| 8-189, gnl|tetNig1|chrUn_random (28354048-28353856) | |
| 8-189, gnl|xenTro1|scaffold_1872 (43999-44204) | |
| 303-1149, gnl|bosTau2|chr16 (38967601-38968440) | |
| 303-1149, gnl|Hg17|chr1 (15805595-15806416) | |
| 303-1149, gnl|Mm7|chr4 (141005151-141004324) | |
| 1196-1296, gnl|bosTau2|chr16 (38968457-38968559) | |
| 1196-1296, gnl|Hg17|chr1 (15806457-15806567) | |
| 1196-1296, gnl|Mm7|chr4 (141004283-141004178) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-189, gnl|bosTau2|chr16 (38966576-38966757) | |
| 8-189, gnl|canFam2|chr2 (84765291-84765079) | |
| 8-189, gnl|danRer3|chr23 (33112268-33112459) | |
| 8-189, gnl|fr1|chrUn (105048902-105049101) | |
| 8-189, gnl|galGal2|chr21 (4072486-4072689) | |
| 8-189, gnl|hg17|chr1 (15804137-15804340) | |
| 8-189, gnl|Hg17|chr1 (15804150-15804331) | |
| 8-189, gnl|loxAfr1|scaffold_113 (195870-195658) | |
| 8-189, gnl|mm7|chr4 (141006589-141006385) | |
| 8-189, gnl|Mm7|chr4 (141006570-141006389) | |
| 8-189, gnl|monDom2|scaffold_109 (3518642-3518454) | |
| 8-189, gnl|oryCun1|scaffold_165312 (6129-5929) | |
| 8-189, gnl|panTro1|chr1 (15970308-15970511) | |
| 8-189, gnl|rheMac2|chr1 (18518152-18518355) | |
| 8-189, gnl|rn3|chr5 (160539207-160539003) | |
| 8-189, gnl|tetNig1|chrUn_random (28354048-28353856) | |
| 8-189, gnl|xenTro1|scaffold_1872 (43999-44204) | |
| 303-1149, gnl|bosTau2|chr16 (38967601-38968440) | |
| 303-1149, gnl|Hg17|chr1 (15805595-15806416) | |
| 303-1149, gnl|Mm7|chr4 (141005151-141004324) | |
| 1196-1296, gnl|bosTau2|chr16 (38968457-38968559) | |
| 1196-1296, gnl|Hg17|chr1 (15806457-15806567) | |
| 1196-1296, gnl|Mm7|chr4 (141004283-141004178) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| eep (0.367692) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| jej (0.0989218) |