Non-Coding RNA Search

Ss1.1-Lym2-sn16_G08.f.5

Sequence:


               
               AAAAAAAAAGAATCTGTACTTGAATTGGGTCTTTGAAGTATATAGGAAAATAGAGAGTAG
TTAGGCTAAAAGTAAATGATATACCATTGTGGGTCATTTTGAAAGTCTGGCTAATGAAGC
TTGTTTTAATATAGGGCAGTGGCCAGAAGCCGCTGAAGGCTTTGAGTAGGGAGGTCCAGG
ATTTGGTAGGCTGGAATGGTTAGGCAAGGTGAGCTACCTGGAGAAGAACCAGTCTATGGT
ACTCAGCAATGAAAACCTTGCCTGCCCTGACACCTCCTTGGTTGTCTGTTTGCCCCTCTT
ACTGGAACCCCTTAAGAGCAGAGACTATATTTCTTTCACATTCATCGAATCCTCATCTCT
CAGGAGCTCACATGTCAGCCAAGTGGGTGCAGTGTTTACAGTCCCACAAAGAATTAATGA
AATTCTGACCAAGGGGGTGGATGAGGAGTCTTATATCTTTCAGTTGCAGTCTGTGGAGCT
CGACTCTTAATCCTGGATTAACAACAAACTCAACCTGAGGAGAGCCTTATACATTTTACT
TATAGGGTGGCTATTCAGAAGCCTAACATTGTGGTTCCTGTTTGGTGTCCTCAGAACTTC
TTCTCAAGTATTTGAAGGAGAACTCTACCAGCTGTGAACACCCAACTGTTCTAACCCAGA
GGTGGCTCATAATAAATGAATAAATATTGCAATCACAAGCTTTCGTAATACGTTTTGTCC
TACCTTTTGATTATTAAAGATCCCTCCATTAAGAAGTCTTCCAATCAATTCCTTTGATTT
AAAAAAAATTTTTTTAATTACAAGCTGTCTTCTGACAAGTTCTTCTGGTTATAAAGAGAA
ATTTTGGCTTCTAAAAATTGTGTCTTTATACCAAACAGTAAAGGAAGATGGTAGAATACT
AATTAAGTCTGATTTAGGACCTAAATTTAAAAAAAAGAATTATTCTTTTAAAGCCAAGGA
GGCCTATTTAGTCTCTCTCTCTTTTTTTAAAAAAACTAGTTTGAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAGAATCTGTACTTGAATTGGGTCTTTGAAGTATATAGGAAAATAGAGAGTAG
TTAGGCTAAAAGTAAATGATATACCATTGTGGGTCATTTTGAAAGTCTGGCTAATGAAGC
TTGTTTTAATATAGGGCAGTGGCCAGAAGCCGCTGAAGGCTTTGAGTAGGGAGGTCCAGG
ATTTGGTAGGCTGGAATGGTTAGGCAAGGTGAGCTACCTGGAGAAGAACCAGTCTATGGT
ACTCAGCAATGAAAACCTTGCCTGCCCTGACACCTCCTTGGTTGTCTGTTTGCCCCTCTT
ACTGGAACCCCTTAAGAGCAGAGACTATATTTCTTTCACATTCATCGAATCCTCATCTCT
CAGGAGCTCACATGTCAGCCAAGTGGGTGCAGTGTTTACAGTCCCACAAAGAATTAATGA
AATTCTGACCAAGGGGGTGGATGAGGAGTCTTATATCTTTCAGTTGCAGTCTGTGGAGCT
CGACTCTTAATCCTGGATTAACAACAAACTCAACCTGAGGAGAGCCTTATACATTTTACT
TATAGGGTGGCTATTCAGAAGCCTAACATTGTGGTTCCTGTTTGGTGTCCTCAGAACTTC
TTCTCAAGTATTTGAAGGAGAACTCTACCAGCTGTGAACACCCAACTGTTCTAACCCAGA
GGTGGCTCATAATAAATGAATAAATATTGCAATCACAAGCTTTCGTAATACGTTTTGTCC
TACCTTTTGATTATTAAAGATCCCTCCATTAAGAAGTCTTCCAATCAATTCCTTTGATTT
AAAAAAAATTTTTTTAATTACAAGCTGTCTTCTGACAAGTTCTTCTGGTTATAAAGAGAA
ATTTTGGCTTCTAAAAATTGTGTCTTTATACCAAACAGTAAAGGAAGATGGTAGAATACT
AATTAAGTCTGATTTAGGACCTAAATTTAAAAAAAAGAATTATTCTTTTAAAGCCAAGGA
GGCCTATTTAGTCTCTCTCTCTTTTTTTAAAAAAACTAGTTTGAGATT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-795, gnl|bosTau2|chr20 (21507845-21507071)
               

               
               9-795, gnl|Hg17|chr5 (39421784-39421048)
               

               
               9-795, gnl|Mm7|chr15 (6254080-6254751)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-795, gnl|bosTau2|chr20 (21507845-21507071)
               

               
               9-795, gnl|Hg17|chr5 (39421784-39421048)
               

               
               9-795, gnl|Mm7|chr15 (6254080-6254751)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	9-795, gnl\|bosTau2\|chr20 (21507845-21507071)
	9-795, gnl\|Hg17\|chr5 (39421784-39421048)
	9-795, gnl\|Mm7\|chr15 (6254080-6254751)