Non-Coding RNA Search

Ss1.1-Lym2-sn17_C01.f.5

Sequence:


               
               TCGGAATTGATTTTAAAATCAGAACGATAGAACTGGATGGAAAGAAAATTAAGCTTCAGA
TATGGGACACAGCGGGCCAGGAAAGATTTCGAACCATCACTACAGCATACTATAGAGGAG
CCATGGGAATCATGCTGGTCTATGACATCACAAATGAAAAGTCCTTTGACAATATCAAGA
ATTGGATAAGAAACATTGAGGAGCATGCCTCTTCAGATGTTGAAAGAATGATCCTGGGTA
ACAAATGTGATATGAATGACAAGAGACAAGTGTCAAAAGAAAGAGGGGAGAAGTTAGCAA
TTGACTATGGGATTAAATTCTTGGAGACAAGTGCAAAATCCAGTATGAATGTAGAAGAGG
CATTTTTTATACTCGCACGAGATATAATGACAAAACTCAACAGAAAAATGAATGACAGCA
ATTCATCAGGGGCAGGCGGACCAGTGAAAATAACAGAAAACCGATCAAAGAAGGCCAGTT
TCTTCCGTTGTTTGCTACTTTGATGAACTCTTTCTGAGAGACTGCAGCACATCTTGAGGA
CCCTCTCCTGCTTCTCTGAAAGCACAGGTCACCCAGCCTCAGAATCATCCCACTGGGCTG
CTACTGAGAGCACCACTGAACCTAGACCTCTCGACACAGGATGTGTGGTGGATTCTAGCC
TCACGGCCCATCAAGCTACAGGCTTCTTTTTTCAAATGTGGAAGCAATGAAGTGGAGACA
CGTGCAGGACTTAACTTGTTTTTCCTTTGTTCTATTGTGTGTTGCAGAAGCTGCTATCTC
TCTTTTTCACTTTGCACATCAGTGTTAGTCTTTCCTTGTTACCACATAGTCTGAGATTCA
TTTCTGCACACTTATGTCTGATGCGGTTCTAGACAAATTTGCATTTAAGAATGTTTTAAA
AATGAGTAGAACATTTAAAGCAGAGGTTAACATACTAGAATTATAGAACATTTGGTCTGA
TTCATACGGCCAAATGTTATTGCCATTGGGGGCATTGAATTCTGATAAAATTTGTCTTAG
AAGTTGATAAAAATGCCCATCTATTCATCAAAGGCCACAGTTTCTTGATTTCTTCAGATT
GTTAAGAATTTTGCTTCATTCCTAACCTTTTTGCCAGAGAGTCTGGGTAGCTGAATAAAT
CACTTTTTCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGAATTGATTTTAAAATCAGAACGATAGAACTGGATGGAAAGAAAATTAAGCTTCAGA
TATGGGACACAGCGGGCCAGGAAAGATTTCGAACCATCACTACAGCATACTATAGAGGAG
CCATGGGAATCATGCTGGTCTATGACATCACAAATGAAAAGTCCTTTGACAATATCAAGA
ATTGGATAAGAAACATTGAGGAGCATGCCTCTTCAGATGTTGAAAGAATGATCCTGGGTA
ACAAATGTGATATGAATGACAAGAGACAAGTGTCAAAAGAAAGAGGGGAGAAGTTAGCAA
TTGACTATGGGATTAAATTCTTGGAGACAAGTGCAAAATCCAGTATGAATGTAGAAGAGG
CATTTTTTATACTCGCACGAGATATAATGACAAAACTCAACAGAAAAATGAATGACAGCA
ATTCATCAGGGGCAGGCGGACCAGTGAAAATAACAGAAAACCGATCAAAGAAGGCCAGTT
TCTTCCGTTGTTTGCTACTTTGATGAACTCTTTCTGAGAGACTGCAGCACATCTTGAGGA
CCCTCTCCTGCTTCTCTGAAAGCACAGGTCACCCAGCCTCAGAATCATCCCACTGGGCTG
CTACTGAGAGCACCACTGAACCTAGACCTCTCGACACAGGATGTGTGGTGGATTCTAGCC
TCACGGCCCATCAAGCTACAGGCTTCTTTTTTCAAATGTGGAAGCAATGAAGTGGAGACA
CGTGCAGGACTTAACTTGTTTTTCCTTTGTTCTATTGTGTGTTGCAGAAGCTGCTATCTC
TCTTTTTCACTTTGCACATCAGTGTTAGTCTTTCCTTGTTACCACATAGTCTGAGATTCA
TTTCTGCACACTTATGTCTGATGCGGTTCTAGACAAATTTGCATTTAAGAATGTTTTAAA
AATGAGTAGAACATTTAAAGCAGAGGTTAACATACTAGAATTATAGAACATTTGGTCTGA
TTCATACGGCCAAATGTTATTGCCATTGGGGGCATTGAATTCTGATAAAATTTGTCTTAG
AAGTTGATAAAAATGCCCATCTATTCATCAAAGGCCACAGTTTCTTGATTTCTTCAGATT
GTTAAGAATTTTGCTTCATTCCTAACCTTTTTGCCAGAGAGTCTGGGTAGCTGAATAAAT
CACTTTTTCAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57997184|emb|CAI46143.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57997184|emb|CAI46143.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               410-524, - strand, RNAz p=0.548387
               

               
               876-996, + strand, RNAz p=0.701267

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               410-524, - strand, RNAz p=0.548387
               

               
               876-996, + strand, RNAz p=0.701267

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016530, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016530, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               64-203, gnl|bosTau2|chr11 (54646544-54646683)
               

               
               64-203, gnl|canFam2|chr17 (23234586-23234679)
               

               
               64-203, gnl|danRer3|chrNA (80998120-80998213)
               

               
               64-203, gnl|dasNov1|scaffold_14951 (1644-1551)
               

               
               64-203, gnl|echTel1|scaffold_135228 (295-388)
               

               
               64-203, gnl|fr1|chrUn (177154018-177154111)
               

               
               64-203, gnl|galGal2|chr3 (102952815-102952908)
               

               
               64-203, gnl|hg17|chr2 (26244286-26244379)
               

               
               64-203, gnl|Hg17|chr2 (26244287-26244426)
               

               
               64-203, gnl|loxAfr1|scaffold_31428 (22077-22169)
               

               
               64-203, gnl|mm7|chr12 (3175480-3175387)
               

               
               64-203, gnl|Mm7|chr12 (3175477-3175338)
               

               
               64-203, gnl|monDom2|scaffold_1 (150618336-150618243)
               

               
               64-203, gnl|oryCun1|scaffold_203679 (11304-11211)
               

               
               64-203, gnl|panTro1|chr12 (27151666-27151759)
               

               
               64-203, gnl|rheMac2|chr13 (26063823-26063916)
               

               
               64-203, gnl|rn3|chr6_random (447880-447787)
               

               
               64-203, gnl|tetNig1|chr14 (1856756-1856849)
               

               
               64-203, gnl|xenTro1|scaffold_661 (268444-268537)
               


               
               410-996, gnl|bosTau2|chr10 (31158456-31159049)
               

               
               410-996, gnl|Hg17|chr15 (61342778-61343357)
               

               
               410-996, gnl|Mm7|chr9 (66879278-66878712)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-203, gnl|bosTau2|chr11 (54646544-54646683)
               

               
               64-203, gnl|canFam2|chr17 (23234586-23234679)
               

               
               64-203, gnl|danRer3|chrNA (80998120-80998213)
               

               
               64-203, gnl|dasNov1|scaffold_14951 (1644-1551)
               

               
               64-203, gnl|echTel1|scaffold_135228 (295-388)
               

               
               64-203, gnl|fr1|chrUn (177154018-177154111)
               

               
               64-203, gnl|galGal2|chr3 (102952815-102952908)
               

               
               64-203, gnl|hg17|chr2 (26244286-26244379)
               

               
               64-203, gnl|Hg17|chr2 (26244287-26244426)
               

               
               64-203, gnl|loxAfr1|scaffold_31428 (22077-22169)
               

               
               64-203, gnl|mm7|chr12 (3175480-3175387)
               

               
               64-203, gnl|Mm7|chr12 (3175477-3175338)
               

               
               64-203, gnl|monDom2|scaffold_1 (150618336-150618243)
               

               
               64-203, gnl|oryCun1|scaffold_203679 (11304-11211)
               

               
               64-203, gnl|panTro1|chr12 (27151666-27151759)
               

               
               64-203, gnl|rheMac2|chr13 (26063823-26063916)
               

               
               64-203, gnl|rn3|chr6_random (447880-447787)
               

               
               64-203, gnl|tetNig1|chr14 (1856756-1856849)
               

               
               64-203, gnl|xenTro1|scaffold_661 (268444-268537)
               


               
               410-996, gnl|bosTau2|chr10 (31158456-31159049)
               

               
               410-996, gnl|Hg17|chr15 (61342778-61343357)
               

               
               410-996, gnl|Mm7|chr9 (66879278-66878712)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.415628)
               

               
               sto (0.179824)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               sto (0.179824)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

	410-524, - strand, RNAz p=0.548387
	876-996, + strand, RNAz p=0.701267

	64-203, gnl\|bosTau2\|chr11 (54646544-54646683)
	64-203, gnl\|canFam2\|chr17 (23234586-23234679)
	64-203, gnl\|danRer3\|chrNA (80998120-80998213)
	64-203, gnl\|dasNov1\|scaffold_14951 (1644-1551)
	64-203, gnl\|echTel1\|scaffold_135228 (295-388)
	64-203, gnl\|fr1\|chrUn (177154018-177154111)
	64-203, gnl\|galGal2\|chr3 (102952815-102952908)
	64-203, gnl\|hg17\|chr2 (26244286-26244379)
	64-203, gnl\|Hg17\|chr2 (26244287-26244426)
	64-203, gnl\|loxAfr1\|scaffold_31428 (22077-22169)
	64-203, gnl\|mm7\|chr12 (3175480-3175387)
	64-203, gnl\|Mm7\|chr12 (3175477-3175338)
	64-203, gnl\|monDom2\|scaffold_1 (150618336-150618243)
	64-203, gnl\|oryCun1\|scaffold_203679 (11304-11211)
	64-203, gnl\|panTro1\|chr12 (27151666-27151759)
	64-203, gnl\|rheMac2\|chr13 (26063823-26063916)
	64-203, gnl\|rn3\|chr6_random (447880-447787)
	64-203, gnl\|tetNig1\|chr14 (1856756-1856849)
	64-203, gnl\|xenTro1\|scaffold_661 (268444-268537)

	410-996, gnl\|bosTau2\|chr10 (31158456-31159049)
	410-996, gnl\|Hg17\|chr15 (61342778-61343357)
	410-996, gnl\|Mm7\|chr9 (66879278-66878712)

	tes (0.415628)
	sto (0.179824)
	liv (0.146284)
	hyp (0.142837)
	ebs (0.118301)