Non-Coding RNA Search

Ss1.1-Lym2-sn19_H04.f.5

Sequence:


               
               GAACTATGCATTACTTGGTCTGGAAGTTTAAAATTTGGACTGAAAGGGTAAAACCTTTTA
AATGAAAAAAGTCATATCCTTTTAACATTACTTTCAAGCTAATAAATATAAGAATTCTTT
AGGAAATTAGAGATGGAAATATACTGGAACTTCATGATAATTGACCCTCTGGATTGCCAA
ATTAGTATAATACAGATCTGGCCAAGAGGATTGAATTTATGGAATTCATTATAATGTCTC
ATCGATAACATGGCACTTCAGCAGAGATTTATGATGATTTAGGTGATGGTATGCCAATGC
TTTGTATGCTCTTCAAATATCTACATGTCATGGTTTCCTAAGTACATAGTTTTTGGTCCT
GCCTCATTTAAAATAGTTAATGATTATAACTTATTTTGAAAAATACTTTATTTTACCTGT
GAAGTGGAATTCCTTCTTTCATTGGCAGTAAAGAAGTGAGGTAACCAGGAAGTTTCTTCT
GAAATTTTCTCAAGTCCTTGTATTCTAAAATAGCCTATAATACCAAGAAGAATGATGGTA
AATTCTTTGTCTTTATTTGTTCTTTCAGTCAGGAGGAATTTATTAAGTACCTACTGTGTG
CTCAGCACTAAGGATCAGTTGATAAAATGACAATTAAAAAATGGCTTGTGGCCTCGGAAC
TTTTCTCGGCAGGAACAAGAAATAAAAGATGATTAGTGGTACTTAGAAATTCCTGGATAT
TTGCCAGAGGAAAAATGGAAGCAAGAATTTGTGCACAGTGCCTTGCCCATAATAGGTACT
CAATAAACAATTATTCTTCATAGAGTCTCTTGCCATGGTTTATAGTGTTTTATGAAATTT
GTCTTAATTGAAAAAAGACCAAATATTCCAAATAAGCTTATAGGCAGCTGTGGCCAGTTA
AAAATGGGGTTGTACAGTTAGTTCCTAGAATGTTATTTTGCACTAGTTGTCACTTAGAAA
GATGGGGTTCCTGTAGTTTTTTGGTGCTAAGGGATACTTTGTCATTATGATGAAGTTAAG
TGTTAAGTGTCAGATAAATAGCACACTGAATAGTTCTTTCTGCTGGTCTGTTTTTTCCTC
TTTGTTGTTGTTGTTGTTTTTAACTGTAAAATGTTTATCAATCAAACTATTGTAGCAGCT
ACAAATAATTCACCAGCATGACAAAATGGTCAAAAAATAAGTCATCAGCACTTCAAAAAT
GAAAGCAACTTTTGAAATTTTCTTTTAAAATTGTCAAATATATTTTATGAAGAATTTATA
AAAGGGGGAAATGATTGTAATTTATTGTTCATGACTTTTTTTTTTTTAAATAAAGTGAGT
TTCAACAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTATGCATTACTTGGTCTGGAAGTTTAAAATTTGGACTGAAAGGGTAAAACCTTTTA
AATGAAAAAAGTCATATCCTTTTAACATTACTTTCAAGCTAATAAATATAAGAATTCTTT
AGGAAATTAGAGATGGAAATATACTGGAACTTCATGATAATTGACCCTCTGGATTGCCAA
ATTAGTATAATACAGATCTGGCCAAGAGGATTGAATTTATGGAATTCATTATAATGTCTC
ATCGATAACATGGCACTTCAGCAGAGATTTATGATGATTTAGGTGATGGTATGCCAATGC
TTTGTATGCTCTTCAAATATCTACATGTCATGGTTTCCTAAGTACATAGTTTTTGGTCCT
GCCTCATTTAAAATAGTTAATGATTATAACTTATTTTGAAAAATACTTTATTTTACCTGT
GAAGTGGAATTCCTTCTTTCATTGGCAGTAAAGAAGTGAGGTAACCAGGAAGTTTCTTCT
GAAATTTTCTCAAGTCCTTGTATTCTAAAATAGCCTATAATACCAAGAAGAATGATGGTA
AATTCTTTGTCTTTATTTGTTCTTTCAGTCAGGAGGAATTTATTAAGTACCTACTGTGTG
CTCAGCACTAAGGATCAGTTGATAAAATGACAATTAAAAAATGGCTTGTGGCCTCGGAAC
TTTTCTCGGCAGGAACAAGAAATAAAAGATGATTAGTGGTACTTAGAAATTCCTGGATAT
TTGCCAGAGGAAAAATGGAAGCAAGAATTTGTGCACAGTGCCTTGCCCATAATAGGTACT
CAATAAACAATTATTCTTCATAGAGTCTCTTGCCATGGTTTATAGTGTTTTATGAAATTT
GTCTTAATTGAAAAAAGACCAAATATTCCAAATAAGCTTATAGGCAGCTGTGGCCAGTTA
AAAATGGGGTTGTACAGTTAGTTCCTAGAATGTTATTTTGCACTAGTTGTCACTTAGAAA
GATGGGGTTCCTGTAGTTTTTTGGTGCTAAGGGATACTTTGTCATTATGATGAAGTTAAG
TGTTAAGTGTCAGATAAATAGCACACTGAATAGTTCTTTCTGCTGGTCTGTTTTTTCCTC
TTTGTTGTTGTTGTTGTTTTTAACTGTAAAATGTTTATCAATCAAACTATTGTAGCAGCT
ACAAATAATTCACCAGCATGACAAAATGGTCAAAAAATAAGTCATCAGCACTTCAAAAAT
GAAAGCAACTTTTGAAATTTTCTTTTAAAATTGTCAAATATATTTTATGAAGAATTTATA
AAAGGGGGAAATGATTGTAATTTATTGTTCATGACTTTTTTTTTTTTAAATAAAGTGAGT
TTCAACAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1332, gnl|bosTau2|chr2 (79703503-79702170)
               

               
               1-1332, gnl|Hg17|chr1 (26134851-26136172)
               

               
               1-1332, gnl|Mm7|chr4 (133655065-133653435)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1332, gnl|bosTau2|chr2 (79703503-79702170)
               

               
               1-1332, gnl|Hg17|chr1 (26134851-26136172)
               

               
               1-1332, gnl|Mm7|chr4 (133655065-133653435)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               lin (0.291206)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               lin (0.291206)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	1-1332, gnl\|bosTau2\|chr2 (79703503-79702170)
	1-1332, gnl\|Hg17\|chr1 (26134851-26136172)
	1-1332, gnl\|Mm7\|chr4 (133655065-133653435)

	pro (0.512033)
	lin (0.291206)
	nms (0.213858)
	sag (0.182715)
	fty (0.17584)
	eye (0.170503)
	mga (0.160205)
	bfe (0.149858)
	hyp (0.142837)
	ste (0.135208)
	ret (0.128733)
	eru (0.120048)
	med (0.116252)
	cty (0.10408)