Non-Coding RNA Search

Ss1.1-Lym2-sn25_A10.f.5S

Sequence:


               
               GGGGGAGGGGAGAGAGAAAAATATGTTGGGTATGATTGCGTTTATTCAAAGGCTGTATGG
TGAAGCCACCTAAGACTTCCAGATTTTTTTTTCCTCTTTCCTGTGTAGTCTTTGGTTGTT
CACATTCCAAAATGGTGGTTGCTGCTTTCCAAGGAATGTTCAGGAGGGCAGCTGCCTTGG
AGGTAGGTTACCAGGACTCCTCTGCATGTTACATGCACATAAAGGCTCCAGAAGGGACTG
TAGCTGCTAGAGGCCTCTGCTAGCTGTTAGAGGTAGGCAGGTCCACGGCTGCATGCTGCT
CTCCCTCTGAGCCCCAAGGTCTGTTTTTGGCTGTGGTTTTAAAAGAGCCCCTCAACAGAT
GCTCTATTTAATAACCAGTTTGTTCCTCAGATGTGGCATATCATATATCCCAACAGTTCC
CAGTTGCATGAAAAACTGACTGATAAAATCAGTGACATCCTTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGAGGGGAGAGAGAAAAATATGTTGGGTATGATTGCGTTTATTCAAAGGCTGTATGG
TGAAGCCACCTAAGACTTCCAGATTTTTTTTTCCTCTTTCCTGTGTAGTCTTTGGTTGTT
CACATTCCAAAATGGTGGTTGCTGCTTTCCAAGGAATGTTCAGGAGGGCAGCTGCCTTGG
AGGTAGGTTACCAGGACTCCTCTGCATGTTACATGCACATAAAGGCTCCAGAAGGGACTG
TAGCTGCTAGAGGCCTCTGCTAGCTGTTAGAGGTAGGCAGGTCCACGGCTGCATGCTGCT
CTCCCTCTGAGCCCCAAGGTCTGTTTTTGGCTGTGGTTTTAAAAGAGCCCCTCAACAGAT
GCTCTATTTAATAACCAGTTTGTTCCTCAGATGTGGCATATCATATATCCCAACAGTTCC
CAGTTGCATGAAAAACTGACTGATAAAATCAGTGACATCCTTAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               130-248, + strand, RNAz p=0.851249

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-248, + strand, RNAz p=0.851249

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-375, gnl|bosTau2|chr29 (1864891-1864557)
               

               
               24-375, gnl|Hg17|chr11 (87698902-87699260)
               

               
               24-375, gnl|Mm7|chr7 (84226059-84225713)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-375, gnl|bosTau2|chr29 (1864891-1864557)
               

               
               24-375, gnl|Hg17|chr11 (87698902-87699260)
               

               
               24-375, gnl|Mm7|chr7 (84226059-84225713)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               eli (0.151814)

	24-375, gnl\|bosTau2\|chr29 (1864891-1864557)
	24-375, gnl\|Hg17\|chr11 (87698902-87699260)
	24-375, gnl\|Mm7\|chr7 (84226059-84225713)