Non-Coding RNA Search

Ss1.1-Lym2-sn25_E06.f.5

Sequence:


               
               CCATACGCTAGAAATGCAACTAGATTCCCACACTAGTAAAGGAGGGAAAGGACAATTTAA
TATAAATTTCTGTTGGCGCACTTCTGACAGGCCGTTATTATCTGCTTGGACAAAGCCTCT
CTGAACAGCCGCATACAGTGAATCTTAATGATGTTATGAAATAGGCCTTTGCCAGTGCTC
TTGATCGGAGCTTCCGGTACGTGATAAGGGTATGTCATGTATGCATGGATGTGTTTAATA
CTCTGAATTTTAATTAGAAAAAATACAATGGCAGAAAGCTCTGGTTTCTAAGGGGCATCC
TTTAACTCATGTGGGACATGAGCAGAATTGTGGGGCGGGGAGAAGTGTTTTCAATGCTCA
AAACTAAGCACGTATAAATTTTTCCTGTGTTTCCATCAGAGGGCAGGACATTTTTCTGTA
TTATCCTAAACATGAGCACAGAGGTTGAATCATTTCTTTAAAGTGGCCTTGTAAGACTTG
ATCCCACAATCCAAGGCACCGTAGAAGACTTGGATACTTAAAGTTTTTTCTGAGTAACAT
TTTTTTCTCCATTTCCACTGTTTCATGAGATGTTTTCTAATTTATGGAGATTTTAATTGA
AAATAAACTTGAGTGCCAATGGAGCCGGGTTTTTTTCTCACTTCCTAAAAGGAGCAAATG
CAAAGTAAATAACTAAGCAGACTTTGTTTGGTTCTGAACCGTATGTGGGTATATTGTTAT
CAAGTTCCAGCTTCCTTTAAACTAATAAAGAATAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATACGCTAGAAATGCAACTAGATTCCCACACTAGTAAAGGAGGGAAAGGACAATTTAA
TATAAATTTCTGTTGGCGCACTTCTGACAGGCCGTTATTATCTGCTTGGACAAAGCCTCT
CTGAACAGCCGCATACAGTGAATCTTAATGATGTTATGAAATAGGCCTTTGCCAGTGCTC
TTGATCGGAGCTTCCGGTACGTGATAAGGGTATGTCATGTATGCATGGATGTGTTTAATA
CTCTGAATTTTAATTAGAAAAAATACAATGGCAGAAAGCTCTGGTTTCTAAGGGGCATCC
TTTAACTCATGTGGGACATGAGCAGAATTGTGGGGCGGGGAGAAGTGTTTTCAATGCTCA
AAACTAAGCACGTATAAATTTTTCCTGTGTTTCCATCAGAGGGCAGGACATTTTTCTGTA
TTATCCTAAACATGAGCACAGAGGTTGAATCATTTCTTTAAAGTGGCCTTGTAAGACTTG
ATCCCACAATCCAAGGCACCGTAGAAGACTTGGATACTTAAAGTTTTTTCTGAGTAACAT
TTTTTTCTCCATTTCCACTGTTTCATGAGATGTTTTCTAATTTATGGAGATTTTAATTGA
AAATAAACTTGAGTGCCAATGGAGCCGGGTTTTTTTCTCACTTCCTAAAAGGAGCAAATG
CAAAGTAAATAACTAAGCAGACTTTGTTTGGTTCTGAACCGTATGTGGGTATATTGTTAT
CAAGTTCCAGCTTCCTTTAAACTAATAAAGAATAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr13 (13976423-13975653)
               

               
               1-756, gnl|Hg17|chr10 (25178337-25177567)
               

               
               1-756, gnl|Mm7|chr2 (21109538-21108769)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr13 (13976423-13975653)
               

               
               1-756, gnl|Hg17|chr10 (25178337-25177567)
               

               
               1-756, gnl|Mm7|chr2 (21109538-21108769)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               cte (0.29274)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

	1-756, gnl\|bosTau2\|chr13 (13976423-13975653)
	1-756, gnl\|Hg17\|chr10 (25178337-25177567)
	1-756, gnl\|Mm7\|chr2 (21109538-21108769)

	cte (0.29274)
	hea (0.204499)
	sin (0.174948)
	rec (0.17307)
	fat (0.147427)
	lnt (0.142308)
	ova (0.129132)
	ecc (0.115035)