Non-Coding RNA Search

Ss1.1-Lym2-sn35_B08.f1.5

Sequence:


               
               GAACACATGCACACAAAACCCCAAACCTCTAAAAACTTCTTAAACACTGATTTATTGGGC
AGAGCAGAAATGGAATTTCTCTAGCGGAGAAAGAGTAAAAGGTAATGTCGGGCCTTTTAA
ACCTTTAGTCCATCGAGCCCGGCTCGGCTGGGATAAGTGGAATGTCAGAAATATGCTGGT
CTGGACAAAAACTACAGGGCTGTTTAAAAACCACTGACGAGGAGGAATGTGTTAGAAAGA
AATAGATTAAAAGCCATTAGGCTGCTTGTCAACCCACACCTATTTTTCTAATAAATTTCT
ATCAATCATGTCATCGCCTCAGTCTAAAAATCTACTATACCTGGACCATTACTACTACAT
GAAAAAGTCTTATTTATTTTTACCTGCATTTGCGCTAAAAGTTTGGCCAGGGGCTGGGCT
TCTCCAAGACCTCCATCCAAGAAGGCAGAGATGTTTGGATTCTGTGGATTCTTTAAACCT
GTGTGCTGATTCAACAACGTTACATTACTTGTGTAAGGGTTTGTGTGTAGTTATCAAACA
TCTGTGGTGTACGGATCTTTGTGAAACATGTATTCTGTAAAGTGCCATAGTCTTTTTTTA
TGTGTAGCATATTTAAAAAATATCTATGTATATTATACATACACAAGTCTGTGTGAAAGA
TGTGCAATAACAAAGGTGTATGTATGTTTTTTTGGAAACTGGACAGGAGTCGGAACAGAG
ATTGGTTCTGTTTTGGCAAAGGAGAGTTTCAACCTTTTGCCTTCATGGCCTAGTCATTAA
CCCATAACAATTTTAATGCTACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACACATGCACACAAAACCCCAAACCTCTAAAAACTTCTTAAACACTGATTTATTGGGC
AGAGCAGAAATGGAATTTCTCTAGCGGAGAAAGAGTAAAAGGTAATGTCGGGCCTTTTAA
ACCTTTAGTCCATCGAGCCCGGCTCGGCTGGGATAAGTGGAATGTCAGAAATATGCTGGT
CTGGACAAAAACTACAGGGCTGTTTAAAAACCACTGACGAGGAGGAATGTGTTAGAAAGA
AATAGATTAAAAGCCATTAGGCTGCTTGTCAACCCACACCTATTTTTCTAATAAATTTCT
ATCAATCATGTCATCGCCTCAGTCTAAAAATCTACTATACCTGGACCATTACTACTACAT
GAAAAAGTCTTATTTATTTTTACCTGCATTTGCGCTAAAAGTTTGGCCAGGGGCTGGGCT
TCTCCAAGACCTCCATCCAAGAAGGCAGAGATGTTTGGATTCTGTGGATTCTTTAAACCT
GTGTGCTGATTCAACAACGTTACATTACTTGTGTAAGGGTTTGTGTGTAGTTATCAAACA
TCTGTGGTGTACGGATCTTTGTGAAACATGTATTCTGTAAAGTGCCATAGTCTTTTTTTA
TGTGTAGCATATTTAAAAAATATCTATGTATATTATACATACACAAGTCTGTGTGAAAGA
TGTGCAATAACAAAGGTGTATGTATGTTTTTTTGGAAACTGGACAGGAGTCGGAACAGAG
ATTGGTTCTGTTTTGGCAAAGGAGAGTTTCAACCTTTTGCCTTCATGGCCTAGTCATTAA
CCCATAACAATTTTAATGCTACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               584-804, + strand, RNAz p=0.995911

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               584-804, + strand, RNAz p=0.995911

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005779, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005779, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-804, gnl|bosTau2|chr10 (3566443-3565635)
               

               
               4-804, gnl|Hg17|chr5 (77818217-77817481)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-804, gnl|bosTau2|chr10 (3566443-3565635)
               

               
               4-804, gnl|Hg17|chr5 (77818217-77817481)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mas (0.210305)
               

               
               csk (0.140746)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               csk (0.140746)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	4-804, gnl\|bosTau2\|chr10 (3566443-3565635)
	4-804, gnl\|Hg17\|chr5 (77818217-77817481)