Non-Coding RNA Search

Ss1.1-Lym2-sn35_F06.f1.5

Sequence:


               
               CCACCGTGGAGCTGCAGGGGGGCCTCATGCCCCGGGGATTCAACCCTCAAGACTACCTGA
ATGTGACGGATGTTCACCTGTTCAAGGAGCGATGGGACAGCAACAAGGTGGACCACCACA
CTGACAAATACGACAGCAAGAAGCTGATTGTACGCCGAGGACAGCCTTTCTACATCCAGA
TCGACTTCAGCCGTCCCTATGACCCCAGAAGGGACCTCTTCAGGGTGGAATATGTCATTG
GGCGCTACCCCCAGGAGAACAAAGGAACCTACATCCCAGTGCCCATCGTCTCCGAGCTGC
AGAGAGGCAAGTGGGGGGCCAAGGTCATCACGACGGAGGACAGGTCGGTGCGGCTGTCCG
TCCAGCCCTCGCCAGACTGCATCGTGGGCAAGTTCCGCATGTACGTTGCCGTCTGGACCC
CGTACGGCGTGATCCGCACCAGCCGGAACCCCGAAACAGACACGTACATCCTCTTCAACC
CTTGGTGTGAAGAGGATGCTGTGTACCTGGATAACGACAAAGAAAGAGAAGAGTATGTCC
TGAATGACATCGGGGTGATTTTTTATGGTGAATTCAACGACATCAAGAGCAGAAGCTGGA
GCTATGGTCAGTTTGAGGAGGGCATCCTTGACGCTTGCCTGTACATGATGGACAGAGCAA
AGATGGACCTTTCTGGCAGAGGGAATCCCATCAAAGTCAGCCGTGTCGGGTCTGCTATGG
TTAATGCCAAAGATGATGAAGGTGTCCTCGTTGGGTCCTGGGACAATGTGTATTCGTACG
GGGTCCCGCCATCAGCCTGGACGGGAAGTGTTGACATCCTGTTGGAATACAAGAGTTCTC
AGACTCCAGTCCGCTATGGTCAGTGCTGGGTTTTTGCTGGAGTCTTTAACACGTTCTTAA
GATGCCTTGGGATACCAGCAAGAGTCGTTACCAATTATTTCTCAGCCCAATTTGTAAACA
TGTATTTATAGTTCTAGATCGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCGTGGAGCTGCAGGGGGGCCTCATGCCCCGGGGATTCAACCCTCAAGACTACCTGA
ATGTGACGGATGTTCACCTGTTCAAGGAGCGATGGGACAGCAACAAGGTGGACCACCACA
CTGACAAATACGACAGCAAGAAGCTGATTGTACGCCGAGGACAGCCTTTCTACATCCAGA
TCGACTTCAGCCGTCCCTATGACCCCAGAAGGGACCTCTTCAGGGTGGAATATGTCATTG
GGCGCTACCCCCAGGAGAACAAAGGAACCTACATCCCAGTGCCCATCGTCTCCGAGCTGC
AGAGAGGCAAGTGGGGGGCCAAGGTCATCACGACGGAGGACAGGTCGGTGCGGCTGTCCG
TCCAGCCCTCGCCAGACTGCATCGTGGGCAAGTTCCGCATGTACGTTGCCGTCTGGACCC
CGTACGGCGTGATCCGCACCAGCCGGAACCCCGAAACAGACACGTACATCCTCTTCAACC
CTTGGTGTGAAGAGGATGCTGTGTACCTGGATAACGACAAAGAAAGAGAAGAGTATGTCC
TGAATGACATCGGGGTGATTTTTTATGGTGAATTCAACGACATCAAGAGCAGAAGCTGGA
GCTATGGTCAGTTTGAGGAGGGCATCCTTGACGCTTGCCTGTACATGATGGACAGAGCAA
AGATGGACCTTTCTGGCAGAGGGAATCCCATCAAAGTCAGCCGTGTCGGGTCTGCTATGG
TTAATGCCAAAGATGATGAAGGTGTCCTCGTTGGGTCCTGGGACAATGTGTATTCGTACG
GGGTCCCGCCATCAGCCTGGACGGGAAGTGTTGACATCCTGTTGGAATACAAGAGTTCTC
AGACTCCAGTCCGCTATGGTCAGTGCTGGGTTTTTGCTGGAGTCTTTAACACGTTCTTAA
GATGCCTTGGGATACCAGCAAGAGTCGTTACCAATTATTTCTCAGCCCAATTTGTAAACA
TGTATTTATAGTTCTAGATCGCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9453724|emb|CAB99356.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9453724|emb|CAB99356.1|

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               240-492, gnl|bosTau2|chr23 (41590920-41590668)
               

               
               240-492, gnl|canFam2|chr35 (9305442-9305725)
               

               
               240-492, gnl|danRer3|chr9 (19889618-19889327)
               

               
               240-492, gnl|dasNov1|scaffold_4923 (9476-9767)
               

               
               240-492, gnl|echTel1|scaffold_191986 (7651-7364)
               

               
               240-492, gnl|galGal2|chr2 (64803784-64803496)
               

               
               240-492, gnl|hg17|chr6 (6211787-6212078)
               

               
               240-492, gnl|Hg17|chr6 (6212042-6211790)
               

               
               240-492, gnl|mm7|chr13 (36409694-36409983)
               

               
               240-492, gnl|Mm7|chr13 (36409949-36409697)
               

               
               240-492, gnl|monDom2|scaffold_3 (90419122-90419405)
               

               
               240-492, gnl|oryCun1|scaffold_171961 (6762-6474)
               

               
               240-492, gnl|panTro1|chr5 (6577603-6577894)
               

               
               240-492, gnl|rheMac2|chr4 (6156475-6156773)
               

               
               240-492, gnl|rn3|chr17 (34151757-34151469)
               

               
               240-492, gnl|xenTro1|scaffold_600 (680784-681055)
               


               
               610-721, gnl|bosTau2|chr23 (41580073-41579962)
               

               
               610-721, gnl|Hg17|chr6 (6193653-6193542)
               

               
               610-721, gnl|Mm7|chr13 (36388990-36388879)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               240-492, gnl|bosTau2|chr23 (41590920-41590668)
               

               
               240-492, gnl|canFam2|chr35 (9305442-9305725)
               

               
               240-492, gnl|danRer3|chr9 (19889618-19889327)
               

               
               240-492, gnl|dasNov1|scaffold_4923 (9476-9767)
               

               
               240-492, gnl|echTel1|scaffold_191986 (7651-7364)
               

               
               240-492, gnl|galGal2|chr2 (64803784-64803496)
               

               
               240-492, gnl|hg17|chr6 (6211787-6212078)
               

               
               240-492, gnl|Hg17|chr6 (6212042-6211790)
               

               
               240-492, gnl|mm7|chr13 (36409694-36409983)
               

               
               240-492, gnl|Mm7|chr13 (36409949-36409697)
               

               
               240-492, gnl|monDom2|scaffold_3 (90419122-90419405)
               

               
               240-492, gnl|oryCun1|scaffold_171961 (6762-6474)
               

               
               240-492, gnl|panTro1|chr5 (6577603-6577894)
               

               
               240-492, gnl|rheMac2|chr4 (6156475-6156773)
               

               
               240-492, gnl|rn3|chr17 (34151757-34151469)
               

               
               240-492, gnl|xenTro1|scaffold_600 (680784-681055)
               


               
               610-721, gnl|bosTau2|chr23 (41580073-41579962)
               

               
               610-721, gnl|Hg17|chr6 (6193653-6193542)
               

               
               610-721, gnl|Mm7|chr13 (36388990-36388879)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	240-492, gnl\|bosTau2\|chr23 (41590920-41590668)
	240-492, gnl\|canFam2\|chr35 (9305442-9305725)
	240-492, gnl\|danRer3\|chr9 (19889618-19889327)
	240-492, gnl\|dasNov1\|scaffold_4923 (9476-9767)
	240-492, gnl\|echTel1\|scaffold_191986 (7651-7364)
	240-492, gnl\|galGal2\|chr2 (64803784-64803496)
	240-492, gnl\|hg17\|chr6 (6211787-6212078)
	240-492, gnl\|Hg17\|chr6 (6212042-6211790)
	240-492, gnl\|mm7\|chr13 (36409694-36409983)
	240-492, gnl\|Mm7\|chr13 (36409949-36409697)
	240-492, gnl\|monDom2\|scaffold_3 (90419122-90419405)
	240-492, gnl\|oryCun1\|scaffold_171961 (6762-6474)
	240-492, gnl\|panTro1\|chr5 (6577603-6577894)
	240-492, gnl\|rheMac2\|chr4 (6156475-6156773)
	240-492, gnl\|rn3\|chr17 (34151757-34151469)
	240-492, gnl\|xenTro1\|scaffold_600 (680784-681055)

	610-721, gnl\|bosTau2\|chr23 (41580073-41579962)
	610-721, gnl\|Hg17\|chr6 (6193653-6193542)
	610-721, gnl\|Mm7\|chr13 (36388990-36388879)