Non-Coding RNA Search

Ss1.1-Lym2-sn37_E06.f.5

Sequence:


               
               CGGAGGCCCAGGAGGAGGGGGAAAAAGAAGGTGGAGGAACCTGGCTACTAATCTGAATCC
GATACGGATTCTCAGCGGAGGCCCAGGAGGAGGGGGAAAAAGAAGGTGGAGGAACCTGGC
TACTAATCTGAATCCGATACGGATTCTCTTAGACCTCAGAGACACAGAAAAGAGAGAAGG
GTGCCTCATCCCCCTTCCTCCCCTCCTTCCTCTCCTCAGCCTTAGCCATGGCGGAGGCAG
GGGCCGGGCTGAGTGAGACCGTCACTGAGACAACGGTTACCGTGACAACCGAGCCCGAGA
ACCGGAGCCTAACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTAGAATGGACGA
GTGACACTGTGGACAACGAACACATGGGGCGCCGCTCATCAAAATGCTGCTGTATTTATG
AGAAACCTCGGGCCTTTGGCGAGAGTTCCACGGAGAGTGATGAGGAGGAAGAGGAGGGCT
GTGGTCATACACACTGTGTACGGGGCCACCGCAAAGGACGGCGTCGTGCAACCCCGGGAC
CAAGCCCCACCACCCCTCCGCAGCCTCCCGACCCCTCCCAGCCCCCTCCAGGGCCAATGC
AGCACTAAATTCCTCTCTCCCCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATTCAT
GTGGCTCCTTGGGGACTAAACCCATGTTTGATCCCTTCTCCAGCCCCTTCCTCCCCTCTC
CGGATAGAAGGAAACAGGAGAGGAGGGTGGACAGAGATCCCGGAATTCTGACTTGCTGCT
ATTCCAGAGCCCAGGCTTCTGGGTTCTCTGAGTCCTCATTTCTCTTCCCAGTACCCAGCT
TCCTCTCTCCAGGGATCCAGGCATCTTGGTCCCAATCTCTTCCCTTTGTTCTCACTGCCA
AACTGCCTGTCCTGGGATCCAGTTATCCTGGCCCCATGCACTCTCCACTTGAGTCCCAAA
CAGTTAAACTGGGTTTCCAACAGCCCCAGCTTTCACTGCCAGGGTCCTAGTCAGATTCCA
GGCAACCTCGGCCCAGCTACGCTTGTTACCCCTGGCTTAGAGCTCTTCCACTGCTGTCTT
TACATAATGCTAACTCTTAGTCCTGGCCTGTGGGATTGTGAGGTCTTATGAGAGACCTCA
GGGCGCTCTTTCCTTCCTCTCCTGCCCACTCCCCTCATGCCCTTAAGAGAAGTTAGGAGG
GAGAGAGGTCTTTGTCATGCTCACCTTTAATGGGTAATGGAGAAAAAAATTAAAAAAGTC
ATATCCTCTCTCCTCTTCCTTCTCACATGACCTAGGGTTTCTGACAAAGCTGGCTTCAAG
ATCAGTCACTTGCAGCCAACTGTTGGCCTTTGGTCTTCCAGGTTAGGAGACAGATCCATC
AGGGTCCCAGGGAGAGGAAGGAAAAGGGAGGGAGCAAAGAGATGGGGGTTTGTCCCCTGT
GCTGTACTCTTACCCCTTCCTTCCTAAGCATTGGTGTCTCTGCCAGCCCAGGTGTCCAGC
TCTCTTGGCCCTCTGCACCCCTTCCCGGGATCTGGATGTCATTTTCCAGGCCTCTTGCCA
TGCACAGTTGCAGAGATCAAATCCATACCACCACCACTGAGATCTCATTTATTGCCACAG
ATGCACAAAATAAATAACCCAACATCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGGCCCAGGAGGAGGGGGAAAAAGAAGGTGGAGGAACCTGGCTACTAATCTGAATCC
GATACGGATTCTCAGCGGAGGCCCAGGAGGAGGGGGAAAAAGAAGGTGGAGGAACCTGGC
TACTAATCTGAATCCGATACGGATTCTCTTAGACCTCAGAGACACAGAAAAGAGAGAAGG
GTGCCTCATCCCCCTTCCTCCCCTCCTTCCTCTCCTCAGCCTTAGCCATGGCGGAGGCAG
GGGCCGGGCTGAGTGAGACCGTCACTGAGACAACGGTTACCGTGACAACCGAGCCCGAGA
ACCGGAGCCTAACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTAGAATGGACGA
GTGACACTGTGGACAACGAACACATGGGGCGCCGCTCATCAAAATGCTGCTGTATTTATG
AGAAACCTCGGGCCTTTGGCGAGAGTTCCACGGAGAGTGATGAGGAGGAAGAGGAGGGCT
GTGGTCATACACACTGTGTACGGGGCCACCGCAAAGGACGGCGTCGTGCAACCCCGGGAC
CAAGCCCCACCACCCCTCCGCAGCCTCCCGACCCCTCCCAGCCCCCTCCAGGGCCAATGC
AGCACTAAATTCCTCTCTCCCCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATTCAT
GTGGCTCCTTGGGGACTAAACCCATGTTTGATCCCTTCTCCAGCCCCTTCCTCCCCTCTC
CGGATAGAAGGAAACAGGAGAGGAGGGTGGACAGAGATCCCGGAATTCTGACTTGCTGCT
ATTCCAGAGCCCAGGCTTCTGGGTTCTCTGAGTCCTCATTTCTCTTCCCAGTACCCAGCT
TCCTCTCTCCAGGGATCCAGGCATCTTGGTCCCAATCTCTTCCCTTTGTTCTCACTGCCA
AACTGCCTGTCCTGGGATCCAGTTATCCTGGCCCCATGCACTCTCCACTTGAGTCCCAAA
CAGTTAAACTGGGTTTCCAACAGCCCCAGCTTTCACTGCCAGGGTCCTAGTCAGATTCCA
GGCAACCTCGGCCCAGCTACGCTTGTTACCCCTGGCTTAGAGCTCTTCCACTGCTGTCTT
TACATAATGCTAACTCTTAGTCCTGGCCTGTGGGATTGTGAGGTCTTATGAGAGACCTCA
GGGCGCTCTTTCCTTCCTCTCCTGCCCACTCCCCTCATGCCCTTAAGAGAAGTTAGGAGG
GAGAGAGGTCTTTGTCATGCTCACCTTTAATGGGTAATGGAGAAAAAAATTAAAAAAGTC
ATATCCTCTCTCCTCTTCCTTCTCACATGACCTAGGGTTTCTGACAAAGCTGGCTTCAAG
ATCAGTCACTTGCAGCCAACTGTTGGCCTTTGGTCTTCCAGGTTAGGAGACAGATCCATC
AGGGTCCCAGGGAGAGGAAGGAAAAGGGAGGGAGCAAAGAGATGGGGGTTTGTCCCCTGT
GCTGTACTCTTACCCCTTCCTTCCTAAGCATTGGTGTCTCTGCCAGCCCAGGTGTCCAGC
TCTCTTGGCCCTCTGCACCCCTTCCCGGGATCTGGATGTCATTTTCCAGGCCTCTTGCCA
TGCACAGTTGCAGAGATCAAATCCATACCACCACCACTGAGATCTCATTTATTGCCACAG
ATGCACAAAATAAATAACCCAACATCAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TM51_MACMU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TM51_MACMU

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               108-1607, - strand, RNAz p=0.999957
               

               
               565-997, - strand, RNAz p=0.99986

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-1607, - strand, RNAz p=0.999957
               

               
               565-997, - strand, RNAz p=0.99986

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               73-300, gnl|bosTau2|chr23 (23996298-23996071)
               

               
               73-300, gnl|Hg17|chr6 (30143014-30143239)
               

               
               73-300, gnl|Mm7|chr17 (35103193-35102959)
               


               
               406-1652, gnl|bosTau2|chr23 (23994463-23993217)
               

               
               406-1652, gnl|Hg17|chr6 (30144860-30146089)
               

               
               406-1652, gnl|Mm7|chr17 (35101094-35099892)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-300, gnl|bosTau2|chr23 (23996298-23996071)
               

               
               73-300, gnl|Hg17|chr6 (30143014-30143239)
               

               
               73-300, gnl|Mm7|chr17 (35103193-35102959)
               


               
               406-1652, gnl|bosTau2|chr23 (23994463-23993217)
               

               
               406-1652, gnl|Hg17|chr6 (30144860-30146089)
               

               
               406-1652, gnl|Mm7|chr17 (35101094-35099892)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               cbr (3.32736)
               

               
               ece (0.687916)
               

               
               cty (0.41632)
               

               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (3.32736)
               

               
               ece (0.687916)
               

               
               cty (0.41632)
               

               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	108-1607, - strand, RNAz p=0.999957
	565-997, - strand, RNAz p=0.99986

	73-300, gnl\|bosTau2\|chr23 (23996298-23996071)
	73-300, gnl\|Hg17\|chr6 (30143014-30143239)
	73-300, gnl\|Mm7\|chr17 (35103193-35102959)

	406-1652, gnl\|bosTau2\|chr23 (23994463-23993217)
	406-1652, gnl\|Hg17\|chr6 (30144860-30146089)
	406-1652, gnl\|Mm7\|chr17 (35101094-35099892)

	cbr (3.32736)
	ece (0.687916)
	cty (0.41632)
	elu (0.385356)
	fce (0.271592)
	cly (0.241284)
	cbe (0.239234)
	ebs (0.236602)
	ecc (0.23007)
	nms (0.213858)
	hea (0.204499)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	nje (0.16592)
	nco (0.161734)
	cag (0.151194)
	lnt (0.142308)
	eep (0.122564)
	spc (0.113366)
	jej (0.0989218)