Ss1.1-Lym2-sn40_E07.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCCTGCCTGGGTTGCGGAAGTGGTAGCCGCTGACCGAGCCTGCTGCTCTCTCGCTAC TGCCTTCGGCTTCCCGGCTCCCCCCCAGACGGAGAGGGCGACCCGGCCGTGGATGGTCAG ATAGCTTCTACCTCCCGCCGCCCATCCCTGGCCCCAACCGGCACGGAGCAGACGGGGGCA GCAGCAGCAGCAGGCGAGGAGGAAGATGGCGGGACGGCTGCCGGCCTGTGTGGTGGACTG TGGCACAGGGTATACCAAACTAGGTTATGCTGGAAATACAGAACCACAGTTTATCATCCC TTCCTGTATTGCTATTAAGGAGTCCGCAAAAGTGGGTGATCAAGCTCAAAGGAGGGTGAT GAAAGGTGTTGATGACCTAGACTTCTTCATTGGTGATGAAGCAATAGAAAAACCTACATA TGCAACAAAGTGGCCAATCCGCCATGGTATAGTTGAAGATTGGGACTTGATGGAAAGGTT TATGGAGCAAGTGATCTTTAAATATTTAAGGGCAGAACCTGAAGACCATTATTTTCTTTT GACTGAACCTCCACTGAATACTCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGA GTCCTTCAATGTTCCAGGCTTATACATTGCTGTACAGGCCGTTCTTGCCTTAGCTGCATC TTGGACCTCCAGACAAGTAGGAGAACGGACGTTGACTGGTACGGTAATAGACAGCGGAGA CGGTGTCACTCATGTCATCCCAGTGGCCGAAGGATATGTGATTGGCAGCTGTATTAAGCA CATTCCAATCGCAGGACGAGATATAACATATTTTATTCAGCAGTTGCTGAGAGACCGAGA AGTAGGAATTCCTCCAGAGCAATCCTTGGAAACTGCTAAGGCAGTAAAGGAGCGCTATAG TTATGTCTGCCCAGATTTAGTAAAAGAATTTAACAAGTATGATACAGATGGATCAAAGTG GATTAAACAGTATACTGGAATCAATGCTATCTCAAAGAAAGAATTTTCCATTGATGTTGG ATATGAGAGATTCTTGGGACCTGAAATTTTTTTTCATCCAGAGTTTGCTAATCCAGACTT TACTCAGCCTATCTCAGAAGTTGTAGATGAAGTAATTCAGAACTGTCCTATTGATGTCAG ACGTCCGCTCTACAAGAATATTGTCCTCTCTGGAGGTTCAACCATGTTCAGGGACTTCGG ACGACGCTTGCAAAGAGATTTGAAAAGAACTGTAGATGCCAGGCTGAAACTAAGTGAGGA ATTGAGTGGTGGTAGATTGAAGCCAAAACCTATTGATGTACAAGTCATTACACACCACAT GCAGCGATATGCAGTTTGGTTTGGAGGATCCATGTTGGCTTCCACACCTGAGTTCTACCA AGTATGCCACACCAAAAAGGATTATGAAGAAATTGGACCTAGCATTTGTCGTCACAATCC AGTGTTTGGAGTCATGTCGTAAAATTGGCTTCATAGTTATTGGGGTTAGGGAGGTAGGGA AGAAATAATCTTTCTGAATACCTGTTTTGTCTGGATGGCTGGTTTTGAGGTTTTAAGCCT GACTTGAAATAAGACCAAACATAATTATACAGGAATATTTTAATAAGTGTATCAACATGC GAATATAGAGGAGAGCCAAAATGATTAAGTGTTTTTCTTTAGATTGAATATTTGAATCTT ATGTGTAACAAAAAGAAGTGGGTTTTAGTTCTTTCTGTGCCCTGGTATTTTGTATATTAT TGAATTATCCAAGATTTGATGGGATTTATCGGTATGTAGATAGCTCTATAATGCTTGAAT TGTACACTTTGAAGTGTGCAATGCAAGAGCTTGTTTATATTTCATACTTTTTATACTTTG AGGAAAAAACGTCAAAGAAAAACTAGTATTTGAGGGAAAAAAAGCAACCAAGTAAAGGAT AGATACAAAAAATAGCCTGTGAGACTTGGCATACACACACACTCATGGGATTCCAGTTAT TACGAAGTGCTTCCATCCTCCTGTGCCCCACAATGGTTTTCTTTGCAAGTGCTTTTGGAA CTAAGAAGCTAGTATCTTGGATTAACTGATGCCTGCTAGTGCTTTCTGATTACTTGCATT CTGTTTCTTGCTTTAAGGAAAAGTAAAGACAAGACTGTTGGACCAGTATTGCAGTTCTGT AGTGTCATTTCTTATTAAAAAATGAATAATTTGATTACCAAAATTGGTATATTTAAAGCC TAACACCATTCTAATAAAGGCACAGATTTCTTTTTAATACATGTTTCAAGCTCTTTAATC TCTTTATAAGTTAACTAATAAATCTATTTTCTTCAAATCTGCAATAGTTCTTTAAAGTCA CAACAGTTAGCAAGCTGACTTTTTTATGTGCTCTAAACAAATAATTGTGAACTTTTAATA TGTTGAGTGCTTTCATTTTGATAACTGGATCTCCATTTGATATTTTCATTTGTATAACTC ATTTGCAGTCTGAAAAATTTTTTTAGTGCCAGTCCCTGACATATCATGAAAAGTTAATTT TCATTGCATTTTAAAATATCTGGATCATGAAGAAAAAGTGATGAAAATAAATTAAAACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCCTGCCTGGGTTGCGGAAGTGGTAGCCGCTGACCGAGCCTGCTGCTCTCTCGCTAC TGCCTTCGGCTTCCCGGCTCCCCCCCAGACGGAGAGGGCGACCCGGCCGTGGATGGTCAG ATAGCTTCTACCTCCCGCCGCCCATCCCTGGCCCCAACCGGCACGGAGCAGACGGGGGCA GCAGCAGCAGCAGGCGAGGAGGAAGATGGCGGGACGGCTGCCGGCCTGTGTGGTGGACTG TGGCACAGGGTATACCAAACTAGGTTATGCTGGAAATACAGAACCACAGTTTATCATCCC TTCCTGTATTGCTATTAAGGAGTCCGCAAAAGTGGGTGATCAAGCTCAAAGGAGGGTGAT GAAAGGTGTTGATGACCTAGACTTCTTCATTGGTGATGAAGCAATAGAAAAACCTACATA TGCAACAAAGTGGCCAATCCGCCATGGTATAGTTGAAGATTGGGACTTGATGGAAAGGTT TATGGAGCAAGTGATCTTTAAATATTTAAGGGCAGAACCTGAAGACCATTATTTTCTTTT GACTGAACCTCCACTGAATACTCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGA GTCCTTCAATGTTCCAGGCTTATACATTGCTGTACAGGCCGTTCTTGCCTTAGCTGCATC TTGGACCTCCAGACAAGTAGGAGAACGGACGTTGACTGGTACGGTAATAGACAGCGGAGA CGGTGTCACTCATGTCATCCCAGTGGCCGAAGGATATGTGATTGGCAGCTGTATTAAGCA CATTCCAATCGCAGGACGAGATATAACATATTTTATTCAGCAGTTGCTGAGAGACCGAGA AGTAGGAATTCCTCCAGAGCAATCCTTGGAAACTGCTAAGGCAGTAAAGGAGCGCTATAG TTATGTCTGCCCAGATTTAGTAAAAGAATTTAACAAGTATGATACAGATGGATCAAAGTG GATTAAACAGTATACTGGAATCAATGCTATCTCAAAGAAAGAATTTTCCATTGATGTTGG ATATGAGAGATTCTTGGGACCTGAAATTTTTTTTCATCCAGAGTTTGCTAATCCAGACTT TACTCAGCCTATCTCAGAAGTTGTAGATGAAGTAATTCAGAACTGTCCTATTGATGTCAG ACGTCCGCTCTACAAGAATATTGTCCTCTCTGGAGGTTCAACCATGTTCAGGGACTTCGG ACGACGCTTGCAAAGAGATTTGAAAAGAACTGTAGATGCCAGGCTGAAACTAAGTGAGGA ATTGAGTGGTGGTAGATTGAAGCCAAAACCTATTGATGTACAAGTCATTACACACCACAT GCAGCGATATGCAGTTTGGTTTGGAGGATCCATGTTGGCTTCCACACCTGAGTTCTACCA AGTATGCCACACCAAAAAGGATTATGAAGAAATTGGACCTAGCATTTGTCGTCACAATCC AGTGTTTGGAGTCATGTCGTAAAATTGGCTTCATAGTTATTGGGGTTAGGGAGGTAGGGA AGAAATAATCTTTCTGAATACCTGTTTTGTCTGGATGGCTGGTTTTGAGGTTTTAAGCCT GACTTGAAATAAGACCAAACATAATTATACAGGAATATTTTAATAAGTGTATCAACATGC GAATATAGAGGAGAGCCAAAATGATTAAGTGTTTTTCTTTAGATTGAATATTTGAATCTT ATGTGTAACAAAAAGAAGTGGGTTTTAGTTCTTTCTGTGCCCTGGTATTTTGTATATTAT TGAATTATCCAAGATTTGATGGGATTTATCGGTATGTAGATAGCTCTATAATGCTTGAAT TGTACACTTTGAAGTGTGCAATGCAAGAGCTTGTTTATATTTCATACTTTTTATACTTTG AGGAAAAAACGTCAAAGAAAAACTAGTATTTGAGGGAAAAAAAGCAACCAAGTAAAGGAT AGATACAAAAAATAGCCTGTGAGACTTGGCATACACACACACTCATGGGATTCCAGTTAT TACGAAGTGCTTCCATCCTCCTGTGCCCCACAATGGTTTTCTTTGCAAGTGCTTTTGGAA CTAAGAAGCTAGTATCTTGGATTAACTGATGCCTGCTAGTGCTTTCTGATTACTTGCATT CTGTTTCTTGCTTTAAGGAAAAGTAAAGACAAGACTGTTGGACCAGTATTGCAGTTCTGT AGTGTCATTTCTTATTAAAAAATGAATAATTTGATTACCAAAATTGGTATATTTAAAGCC TAACACCATTCTAATAAAGGCACAGATTTCTTTTTAATACATGTTTCAAGCTCTTTAATC TCTTTATAAGTTAACTAATAAATCTATTTTCTTCAAATCTGCAATAGTTCTTTAAAGTCA CAACAGTTAGCAAGCTGACTTTTTTATGTGCTCTAAACAAATAATTGTGAACTTTTAATA TGTTGAGTGCTTTCATTTTGATAACTGGATCTCCATTTGATATTTTCATTTGTATAACTC ATTTGCAGTCTGAAAAATTTTTTTAGTGCCAGTCCCTGACATATCATGAAAAGTTAATTT TCATTGCATTTTAAAATATCTGGATCATGAAGAAAAAGTGATGAAAATAAATTAAAACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 792-1876, - strand, RNAz p=0.692979 | |
| 1406-1564, + strand, RNAz p=0.964915 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 792-1876, - strand, RNAz p=0.692979 | |
| 1406-1564, + strand, RNAz p=0.964915 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005721, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-212, gnl|bosTau2|chr21 (16863026-16863231) | |
| 1-212, gnl|Hg17|chrX (67773978-67774192) | |
| 396-1150, gnl|bosTau2|chr11 (21927996-21927289) | |
| 396-1150, gnl|Hg17|chr3 (102364818-102365584) | |
| 396-1150, gnl|Mm7|chr16 (56204319-56203658) | |
| 1155-1282, gnl|bosTau2|chr2 (41605679-41605806) | |
| 1155-1282, gnl|canFam2|chr19 (38123052-38122892) | |
| 1155-1282, gnl|danRer3|chr24 (5597444-5597588) | |
| 1155-1282, gnl|dasNov1|scaffold_46656 (40656-40818) | |
| 1155-1282, gnl|echTel1|scaffold_277615 (111453-111289) | |
| 1155-1282, gnl|fr1|chrUn (222219806-222219662) | |
| 1155-1282, gnl|galGal2|chr7 (30290938-30290783) | |
| 1155-1282, gnl|hg17|chr2 (114425513-114425673) | |
| 1155-1282, gnl|Hg17|chr2 (114425526-114425652) | |
| 1155-1282, gnl|loxAfr1|scaffold_185430 (465-303) | |
| 1155-1282, gnl|mm7|chr1 (125275455-125275291) | |
| 1155-1282, gnl|Mm7|chr1 (125275438-125275310) | |
| 1155-1282, gnl|monDom2|scaffold_2 (17244978-17244813) | |
| 1155-1282, gnl|oryCun1|scaffold_214638 (90592-90754) | |
| 1155-1282, gnl|panTro1|chr13 (419401-419561) | |
| 1155-1282, gnl|rheMac2|chr13 (120111067-120111227) | |
| 1155-1282, gnl|rn3|chr13 (37879463-37879301) | |
| 1155-1282, gnl|tetNig1|chr2 (18787718-18787588) | |
| 1155-1282, gnl|xenTro1|scaffold_2066 (34110-33950) | |
| 1367-2580, gnl|bosTau2|chr2 (41610038-41611260) | |
| 1367-2580, gnl|Hg17|chr2 (114431167-114432391) | |
| 1367-2580, gnl|Mm7|chr1 (125272304-125271130) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-212, gnl|bosTau2|chr21 (16863026-16863231) | |
| 1-212, gnl|Hg17|chrX (67773978-67774192) | |
| 396-1150, gnl|bosTau2|chr11 (21927996-21927289) | |
| 396-1150, gnl|Hg17|chr3 (102364818-102365584) | |
| 396-1150, gnl|Mm7|chr16 (56204319-56203658) | |
| 1155-1282, gnl|bosTau2|chr2 (41605679-41605806) | |
| 1155-1282, gnl|canFam2|chr19 (38123052-38122892) | |
| 1155-1282, gnl|danRer3|chr24 (5597444-5597588) | |
| 1155-1282, gnl|dasNov1|scaffold_46656 (40656-40818) | |
| 1155-1282, gnl|echTel1|scaffold_277615 (111453-111289) | |
| 1155-1282, gnl|fr1|chrUn (222219806-222219662) | |
| 1155-1282, gnl|galGal2|chr7 (30290938-30290783) | |
| 1155-1282, gnl|hg17|chr2 (114425513-114425673) | |
| 1155-1282, gnl|Hg17|chr2 (114425526-114425652) | |
| 1155-1282, gnl|loxAfr1|scaffold_185430 (465-303) | |
| 1155-1282, gnl|mm7|chr1 (125275455-125275291) | |
| 1155-1282, gnl|Mm7|chr1 (125275438-125275310) | |
| 1155-1282, gnl|monDom2|scaffold_2 (17244978-17244813) | |
| 1155-1282, gnl|oryCun1|scaffold_214638 (90592-90754) | |
| 1155-1282, gnl|panTro1|chr13 (419401-419561) | |
| 1155-1282, gnl|rheMac2|chr13 (120111067-120111227) | |
| 1155-1282, gnl|rn3|chr13 (37879463-37879301) | |
| 1155-1282, gnl|tetNig1|chr2 (18787718-18787588) | |
| 1155-1282, gnl|xenTro1|scaffold_2066 (34110-33950) | |
| 1367-2580, gnl|bosTau2|chr2 (41610038-41611260) | |
| 1367-2580, gnl|Hg17|chr2 (114431167-114432391) | |
| 1367-2580, gnl|Mm7|chr1 (125272304-125271130) |
| Expressed library(ies): 49 entry(ies) | More info |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
| lin (1.89284) | |
| cty (1.0408) | |
| rec (0.865351) | |
| sug (0.763747) | |
| thg (0.760746) | |
| cbl (0.688784) | |
| liv (0.585137) | |
| ecc (0.575175) | |
| spl (0.572738) | |
| ret (0.514933) | |
| mga (0.480615) | |
| lyg (0.399308) | |
| mgm (0.360685) | |
| fty (0.351679) | |
| sin (0.349895) | |
| vin (0.332557) | |
| ova (0.258264) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| isp (0.150376) | |
| ski (0.146735) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (1.89284) | |
| cty (1.0408) | |
| rec (0.865351) | |
| sug (0.763747) | |
| thg (0.760746) | |
| cbl (0.688784) | |
| liv (0.585137) | |
| ecc (0.575175) | |
| spl (0.572738) | |
| ret (0.514933) | |
| mga (0.480615) | |
| lyg (0.399308) | |
| mgm (0.360685) | |
| fty (0.351679) | |
| sin (0.349895) | |
| vin (0.332557) | |
| ova (0.258264) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| isp (0.150376) | |
| ski (0.146735) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| spc (0.113366) | |
| jej (0.0989218) |