Ss1.1-Lym2-sn40_G10.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTAGAGATAAGGCGCTTCAGGACTACCGCAAGAAGCTGCTGGAGCACAAGGAGATCGA TGGCCGTCTCAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGTATGAAAAGTC TGAAAATGATCTGAAGGCCCTACAAAGTGTCGGACAGATTGTGGGTGAAGTACTTAAGCA ATTAACTGAAGAAAAATTCATTGTTAAAGCTACAAATGGACCAAGATATGTTGTGGGTTG TCGTCGACAGCTTGACAAAAGTAAGCTGAAGCCAGGAACAAGAGTTGCTTTGGATATGAC TACACTAACTATCATGAGATATTTGCCAAGAGAAGTGGATCCACTGGTTTATAACATGTC TCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAACAGATTCG AGAATTAAGAGAGGTAATAGAATTACCTCTTACAAACCCAGAATTATTCCAACGTGTAGG AATAATACCTCCAAAAGGCTGTTTGTTATATGGACCACCAGGTACAGGAAAAACACTCTT GGCCCGAGCTGTTGCTAGCCAGCTGGATTGCAATTTCTTAAAGGTTGTGTCTAGTTCTAT TGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCCAG GGACCATCAGCCATGTATCATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTT TTCTGAGGGTACTTCAGCTGATAGAGAGATTCAGAGAACTTTAATGGAGTTACTAAATCA AATGGATGGATTTGATACTCTACATAGAGTTAAAATGATCATGGCTACAAACAGACCAGA TACACTGGATCCTGCTTTGCTTCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTT ACCAAATGAACAAGCAAGATTAGATATATTGAAAATCCATGCAGGTCCCATTACAAAGCA TGGTGAAATAGATTATGAAGCAATTGTGAAGCTTTCAGATGGCTTTAATGGAGCAGACCT GAGAAATGTTTGTACTGAAGCAGGTATGTTTGCAATTCGTGCTGATCATGATTTTGTAGT ACAGGAAGACTTCATGAAAGCAGTCAGAAAAGTGGCTGACTCTAAGAAGCTAGAGTCTAA GTTGGACTACAAGCCTGTGTAATTTACTGTAAGGTTTTTGATGGCTGCATGACAGATACT AGCTTAATGTAAAAATAAAGTTAAGGAAAATAATGTGTGTATTGGCAATGATCTCAATAA TAGCATATGAATAAATATATATGAATAACATTGTAAAAATTAGTAATTCAGTAATCCTGC TTTTAAGACGTACCGAAGAAATTTGTATGTTTGTTAATGTTGCATTTATTGCAGCAGGTT ATAAGGGTATGTTGAAGTTTTTCGTATTTGCTGTGTATTTTGTAAAACCTTGAAAATGGT TTGAGATAGTAGTACAGAGAGCATTTCTTACAACTTATTTTATATCATTTGTTTTCTTCA TCCTAAAATTTAATAAAATCTGTTTGATTCAGTTCTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTAGAGATAAGGCGCTTCAGGACTACCGCAAGAAGCTGCTGGAGCACAAGGAGATCGA TGGCCGTCTCAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGTATGAAAAGTC TGAAAATGATCTGAAGGCCCTACAAAGTGTCGGACAGATTGTGGGTGAAGTACTTAAGCA ATTAACTGAAGAAAAATTCATTGTTAAAGCTACAAATGGACCAAGATATGTTGTGGGTTG TCGTCGACAGCTTGACAAAAGTAAGCTGAAGCCAGGAACAAGAGTTGCTTTGGATATGAC TACACTAACTATCATGAGATATTTGCCAAGAGAAGTGGATCCACTGGTTTATAACATGTC TCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAACAGATTCG AGAATTAAGAGAGGTAATAGAATTACCTCTTACAAACCCAGAATTATTCCAACGTGTAGG AATAATACCTCCAAAAGGCTGTTTGTTATATGGACCACCAGGTACAGGAAAAACACTCTT GGCCCGAGCTGTTGCTAGCCAGCTGGATTGCAATTTCTTAAAGGTTGTGTCTAGTTCTAT TGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCCAG GGACCATCAGCCATGTATCATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTT TTCTGAGGGTACTTCAGCTGATAGAGAGATTCAGAGAACTTTAATGGAGTTACTAAATCA AATGGATGGATTTGATACTCTACATAGAGTTAAAATGATCATGGCTACAAACAGACCAGA TACACTGGATCCTGCTTTGCTTCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTT ACCAAATGAACAAGCAAGATTAGATATATTGAAAATCCATGCAGGTCCCATTACAAAGCA TGGTGAAATAGATTATGAAGCAATTGTGAAGCTTTCAGATGGCTTTAATGGAGCAGACCT GAGAAATGTTTGTACTGAAGCAGGTATGTTTGCAATTCGTGCTGATCATGATTTTGTAGT ACAGGAAGACTTCATGAAAGCAGTCAGAAAAGTGGCTGACTCTAAGAAGCTAGAGTCTAA GTTGGACTACAAGCCTGTGTAATTTACTGTAAGGTTTTTGATGGCTGCATGACAGATACT AGCTTAATGTAAAAATAAAGTTAAGGAAAATAATGTGTGTATTGGCAATGATCTCAATAA TAGCATATGAATAAATATATATGAATAACATTGTAAAAATTAGTAATTCAGTAATCCTGC TTTTAAGACGTACCGAAGAAATTTGTATGTTTGTTAATGTTGCATTTATTGCAGCAGGTT ATAAGGGTATGTTGAAGTTTTTCGTATTTGCTGTGTATTTTGTAAAACCTTGAAAATGGT TTGAGATAGTAGTACAGAGAGCATTTCTTACAACTTATTTTATATCATTTGTTTTCTTCA TCCTAAAATTTAATAAAATCTGTTTGATTCAGTTCTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1041-1199, + strand, RNAz p=0.955042 | |
| 1355-1464, - strand, RNAz p=0.592774 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1041-1199, + strand, RNAz p=0.955042 | |
| 1355-1464, - strand, RNAz p=0.592774 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002806, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 301-435, gnl|bosTau2|chr10 (4865209-4865073) | |
| 301-435, gnl|Hg17|chr14 (52247858-52247994) | |
| 301-435, gnl|Mm7|chr14 (40653122-40653267) | |
| 582-709, gnl|bosTau2|chr10 (4859453-4859326) | |
| 582-709, gnl|canFam2|chr8 (31939492-31939623) | |
| 582-709, gnl|danRer3|chr14 (33327959-33327828) | |
| 582-709, gnl|dasNov1|scaffold_25796 (6043-5912) | |
| 582-709, gnl|echTel1|scaffold_246023 (12029-12153) | |
| 582-709, gnl|fr1|chrUn (257812924-257812793) | |
| 582-709, gnl|galGal2|chr5 (54895024-54895155) | |
| 582-709, gnl|hg17|chr14 (52254695-52254826) | |
| 582-709, gnl|Hg17|chr14 (52254695-52254822) | |
| 582-709, gnl|loxAfr1|scaffold_29780 (36418-36287) | |
| 582-709, gnl|mm7|chr14 (40659005-40659136) | |
| 582-709, gnl|Mm7|chr14 (40659005-40659132) | |
| 582-709, gnl|monDom2|scaffold_6 (101226639-101226770) | |
| 582-709, gnl|oryCun1|scaffold_106070 (3969-3838) | |
| 582-709, gnl|panTro1|chr15 (51707178-51707309) | |
| 582-709, gnl|rheMac2|chr7 (115671834-115671965) | |
| 582-709, gnl|rn3|chr15 (21228725-21228856) | |
| 582-709, gnl|tetNig1|chrUn_random (114035776-114035907) | |
| 582-709, gnl|xenTro1|scaffold_355 (1249255-1249124) | |
| 768-890, gnl|bosTau2|chr10 (4857493-4857371) | |
| 768-890, gnl|canFam2|chr8 (31941484-31941650) | |
| 768-890, gnl|danRer3|chr14 (33327414-33327266) | |
| 768-890, gnl|dasNov1|scaffold_25796 (4027-3868) | |
| 768-890, gnl|echTel1|scaffold_229810 (7894-7730) | |
| 768-890, gnl|fr1|chrUn (257811083-257810955) | |
| 768-890, gnl|galGal2|chr5 (54896550-54896704) | |
| 768-890, gnl|hg17|chr14 (52257299-52257452) | |
| 768-890, gnl|Hg17|chr14 (52257327-52257449) | |
| 768-890, gnl|loxAfr1|scaffold_29780 (34159-33997) | |
| 768-890, gnl|mm7|chr14 (40661602-40661758) | |
| 768-890, gnl|Mm7|chr14 (40661633-40661755) | |
| 768-890, gnl|monDom2|scaffold_6 (101229298-101229448) | |
| 768-890, gnl|oryCun1|scaffold_188014 (56249-56406) | |
| 768-890, gnl|panTro1|chr15 (51709775-51709928) | |
| 768-890, gnl|rheMac2|chr7 (115674997-115675150) | |
| 768-890, gnl|rn3|chr15 (21232861-21233018) | |
| 768-890, gnl|tetNig1|chrUn_random (114036504-114036640) | |
| 768-890, gnl|xenTro1|scaffold_355 (1248091-1247951) | |
| 1041-1536, gnl|bosTau2|chr10 (4846467-4845967) | |
| 1041-1536, gnl|Hg17|chr14 (52263964-52264456) | |
| 1041-1536, gnl|Mm7|chr14 (40666814-40667302) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 301-435, gnl|bosTau2|chr10 (4865209-4865073) | |
| 301-435, gnl|Hg17|chr14 (52247858-52247994) | |
| 301-435, gnl|Mm7|chr14 (40653122-40653267) | |
| 582-709, gnl|bosTau2|chr10 (4859453-4859326) | |
| 582-709, gnl|canFam2|chr8 (31939492-31939623) | |
| 582-709, gnl|danRer3|chr14 (33327959-33327828) | |
| 582-709, gnl|dasNov1|scaffold_25796 (6043-5912) | |
| 582-709, gnl|echTel1|scaffold_246023 (12029-12153) | |
| 582-709, gnl|fr1|chrUn (257812924-257812793) | |
| 582-709, gnl|galGal2|chr5 (54895024-54895155) | |
| 582-709, gnl|hg17|chr14 (52254695-52254826) | |
| 582-709, gnl|Hg17|chr14 (52254695-52254822) | |
| 582-709, gnl|loxAfr1|scaffold_29780 (36418-36287) | |
| 582-709, gnl|mm7|chr14 (40659005-40659136) | |
| 582-709, gnl|Mm7|chr14 (40659005-40659132) | |
| 582-709, gnl|monDom2|scaffold_6 (101226639-101226770) | |
| 582-709, gnl|oryCun1|scaffold_106070 (3969-3838) | |
| 582-709, gnl|panTro1|chr15 (51707178-51707309) | |
| 582-709, gnl|rheMac2|chr7 (115671834-115671965) | |
| 582-709, gnl|rn3|chr15 (21228725-21228856) | |
| 582-709, gnl|tetNig1|chrUn_random (114035776-114035907) | |
| 582-709, gnl|xenTro1|scaffold_355 (1249255-1249124) | |
| 768-890, gnl|bosTau2|chr10 (4857493-4857371) | |
| 768-890, gnl|canFam2|chr8 (31941484-31941650) | |
| 768-890, gnl|danRer3|chr14 (33327414-33327266) | |
| 768-890, gnl|dasNov1|scaffold_25796 (4027-3868) | |
| 768-890, gnl|echTel1|scaffold_229810 (7894-7730) | |
| 768-890, gnl|fr1|chrUn (257811083-257810955) | |
| 768-890, gnl|galGal2|chr5 (54896550-54896704) | |
| 768-890, gnl|hg17|chr14 (52257299-52257452) | |
| 768-890, gnl|Hg17|chr14 (52257327-52257449) | |
| 768-890, gnl|loxAfr1|scaffold_29780 (34159-33997) | |
| 768-890, gnl|mm7|chr14 (40661602-40661758) | |
| 768-890, gnl|Mm7|chr14 (40661633-40661755) | |
| 768-890, gnl|monDom2|scaffold_6 (101229298-101229448) | |
| 768-890, gnl|oryCun1|scaffold_188014 (56249-56406) | |
| 768-890, gnl|panTro1|chr15 (51709775-51709928) | |
| 768-890, gnl|rheMac2|chr7 (115674997-115675150) | |
| 768-890, gnl|rn3|chr15 (21232861-21233018) | |
| 768-890, gnl|tetNig1|chrUn_random (114036504-114036640) | |
| 768-890, gnl|xenTro1|scaffold_355 (1248091-1247951) | |
| 1041-1536, gnl|bosTau2|chr10 (4846467-4845967) | |
| 1041-1536, gnl|Hg17|chr14 (52263964-52264456) | |
| 1041-1536, gnl|Mm7|chr14 (40666814-40667302) |
| Expressed library(ies): 50 entry(ies) | More info |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
| bfe (1.94815) | |
| ret (1.80227) | |
| fco (1.72929) | |
| vin (1.33023) | |
| lyg (0.931718) | |
| liv (0.877706) | |
| lin (0.873617) | |
| tbr (0.770891) | |
| ste (0.676041) | |
| kid (0.648677) | |
| ova (0.645661) | |
| thg (0.633955) | |
| tra (0.61546) | |
| isp (0.601504) | |
| ski (0.586941) | |
| spl (0.572738) | |
| sag (0.548145) | |
| gul (0.532765) | |
| sin (0.524843) | |
| mga (0.480615) | |
| mgp (0.461361) | |
| spc (0.453463) | |
| amn (0.417711) | |
| hea (0.408998) | |
| aor (0.390549) | |
| ldo (0.38801) | |
| mgm (0.360685) | |
| cty (0.31224) | |
| lun (0.300978) | |
| eje (0.296501) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (1.94815) | |
| ret (1.80227) | |
| fco (1.72929) | |
| vin (1.33023) | |
| lyg (0.931718) | |
| liv (0.877706) | |
| lin (0.873617) | |
| tbr (0.770891) | |
| ste (0.676041) | |
| kid (0.648677) | |
| ova (0.645661) | |
| thg (0.633955) | |
| tra (0.61546) | |
| isp (0.601504) | |
| ski (0.586941) | |
| spl (0.572738) | |
| sag (0.548145) | |
| gul (0.532765) | |
| sin (0.524843) | |
| mga (0.480615) | |
| mgp (0.461361) | |
| spc (0.453463) | |
| amn (0.417711) | |
| hea (0.408998) | |
| aor (0.390549) | |
| ldo (0.38801) | |
| mgm (0.360685) | |
| cty (0.31224) | |
| lun (0.300978) | |
| eje (0.296501) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) |