Non-Coding RNA Search

Ss1.1-Lym2-sn42_E05.f.5

Sequence:


               
               GAAAGAGTCTCTGTATCATTTATTCGTACTATACAGATGCGTTTACGAGACAGGAAAGAC
TCTCCTCAACTGCTCATGGATGCTAAACACATCTTTCCCGTCACTTTTCCTTTCAACCCA
TCCTCCCTAGCGCTAGAAACCATCCAGATTCCAGCCAGCCTGGGCCTGGGATTCATATCA
CGGGTCTGAAAATGATATCAAGGCAAACACTGACAATACATGTCTTGCCTGAAATAAGAA
CCCATTATTTCAAGTGAGCTACTGAAAACATATTTTTAAAGAGATAGTACTGATCATCGC
CAAACAAAGGATTATGGACTCGAACTCTTCCTAGAATACTTTCCCTCACCTTGAAAAGAA
AGATAGGCTCCTTTGTGCTGTGTTACCTTTATAACAACACTCATCCCTGATCAGTTAGGC
ATCCACAACTGATGTGCAGGTGAATGACAGAAGAAAGGAAGAAAAATGTGTCTTCGGCTA
CCAGCATTTATTTTAAATCCTTATCACTGCATCTAAATGATATCAAAAGCATGAATTCCA
GATATGAGCTGTTGTTAGGAAGGCACCAACAAGGAACCTCCTCGGTGCTGACAAGAAGAA
TTGAAAGAAAATTCACCCTTGAGTACATATCATATTAGTTTAGGAATCAATTACGTTGAT
ACTGTCAAACTGGAACAAAAATAAACTGGCAATATGTAAAGTAACTGGTCACTTAGCTCC
CTTCTGTGTGTCACTATGATGTAGAGATATTAAGAGAATGTTGGATTGCTCTAGAGCATG
AAAGTCTGTTTGTACTGTAGTTTACTAAGCATTTTAAATTGCTGCTACATACTATGTTCT
TTAAAAGGTAGGAGATGTTCTTATTAGGCACTACAACAAAAGCTTCTCTTTTATCAGCTC
TGTTTACAATTCAATCAGATTACAGTTTTAACTGGATTAAGTGCACATATCTACAGATTA
ACCTGCACAAGTAGCAGACCCTGGGAAGTCATGTAGTAATATGACAAAATGTTTGACATT
TAGGGATAAGAATAGGCAGAGTGGCTATTGTTGATGTCATTTTTTCAGGACGTGTTACAT
TGATGTGCTTATTAATTTTCCCTGGGTGGATATCACAGCAGGGTACAGTGTTCTGTGAAG
TGACTTATTTTTAGTTACCACATCTGATTCCCACAGTGCATATTTTCAACCTTGATAGGT
TTTCTTTCTTCTTAATTTATTAAGAATTAATCTCAGTCACTAGAGAGGATTGTCAAAATA
TTCATGATTCTGGTCTTGAAATCTTGATTATTTTATAAATTATGCAAAAGAAGGTATATA
ATAAATAATTATGATTCAGTTTTTAAGGCTTTGCAAGTGCTATGAATGTTCTCAGTATCA
CTAGATACTTTAAAGAGCATCATATTAGAAATACTTTGACCTATATAAAAATATGATTGC
TGAATTTTACAGAGGATTTAGTTTAATAAGACCCAGATTCTGTAAGTTTACATTCTGAAA
TTCCAATTAAACGTATTCTCCATTTTTCCTACAAATCTTATACAGTAAATGTTTCCAGTT
GTGCAAAAGCAAATTCTTAGCTTTCATTAGAAACTCTGGTTCTGAATTATAATCATAGAT
TTATATAATTTAACTGTTAGATCTATAAAAATGACATTAAAGTATGTGCAATATTACTGA
TGGAAGTAAAACATTTTCAAGTAAGTAATAAAGATTGTTATTAAAATACTGTCTGTTAAC
TTATCTGGCCCTCAGATTCCTCATTTATACAGTAAGAGTGTTAGGTGATTCCTGAGGTCC
GTTCCACATCTGAAGTTCTCTGCTCTCACTACTCAGACCATAGAGAAGTGAGTTGCAGTT
ACTCAGTAAGGTTACTCTCTAATGGAAAGACTGTATTTGATGCCTATTAATTCTGAGAGA
TTAAAAAATGTAAAATCACAGGTTTGTGTAGCTATATCTTTCTTAAATGTACATGATTTA
TGTACGTTGCTTTTAGAGAGTTAACTAGTTTAGGTAATTTTTATTCAATCGCGTACTGCT
GTATTCAGTTTGGATACTTTTATTTTTCATTTGCAAAACCAACCAAAAATACTAATCCAG
ATTCTCTTAGTTTTCCCTAGCTGTCAGTGTGGTTTTCAGTGCACAATGAACTGTTGAAAC
CATTTGGCTATTACTGAATGTTCCAGCATCTAAGAGCATAGATAGAACTTGGGTGAGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAGTCTCTGTATCATTTATTCGTACTATACAGATGCGTTTACGAGACAGGAAAGAC
TCTCCTCAACTGCTCATGGATGCTAAACACATCTTTCCCGTCACTTTTCCTTTCAACCCA
TCCTCCCTAGCGCTAGAAACCATCCAGATTCCAGCCAGCCTGGGCCTGGGATTCATATCA
CGGGTCTGAAAATGATATCAAGGCAAACACTGACAATACATGTCTTGCCTGAAATAAGAA
CCCATTATTTCAAGTGAGCTACTGAAAACATATTTTTAAAGAGATAGTACTGATCATCGC
CAAACAAAGGATTATGGACTCGAACTCTTCCTAGAATACTTTCCCTCACCTTGAAAAGAA
AGATAGGCTCCTTTGTGCTGTGTTACCTTTATAACAACACTCATCCCTGATCAGTTAGGC
ATCCACAACTGATGTGCAGGTGAATGACAGAAGAAAGGAAGAAAAATGTGTCTTCGGCTA
CCAGCATTTATTTTAAATCCTTATCACTGCATCTAAATGATATCAAAAGCATGAATTCCA
GATATGAGCTGTTGTTAGGAAGGCACCAACAAGGAACCTCCTCGGTGCTGACAAGAAGAA
TTGAAAGAAAATTCACCCTTGAGTACATATCATATTAGTTTAGGAATCAATTACGTTGAT
ACTGTCAAACTGGAACAAAAATAAACTGGCAATATGTAAAGTAACTGGTCACTTAGCTCC
CTTCTGTGTGTCACTATGATGTAGAGATATTAAGAGAATGTTGGATTGCTCTAGAGCATG
AAAGTCTGTTTGTACTGTAGTTTACTAAGCATTTTAAATTGCTGCTACATACTATGTTCT
TTAAAAGGTAGGAGATGTTCTTATTAGGCACTACAACAAAAGCTTCTCTTTTATCAGCTC
TGTTTACAATTCAATCAGATTACAGTTTTAACTGGATTAAGTGCACATATCTACAGATTA
ACCTGCACAAGTAGCAGACCCTGGGAAGTCATGTAGTAATATGACAAAATGTTTGACATT
TAGGGATAAGAATAGGCAGAGTGGCTATTGTTGATGTCATTTTTTCAGGACGTGTTACAT
TGATGTGCTTATTAATTTTCCCTGGGTGGATATCACAGCAGGGTACAGTGTTCTGTGAAG
TGACTTATTTTTAGTTACCACATCTGATTCCCACAGTGCATATTTTCAACCTTGATAGGT
TTTCTTTCTTCTTAATTTATTAAGAATTAATCTCAGTCACTAGAGAGGATTGTCAAAATA
TTCATGATTCTGGTCTTGAAATCTTGATTATTTTATAAATTATGCAAAAGAAGGTATATA
ATAAATAATTATGATTCAGTTTTTAAGGCTTTGCAAGTGCTATGAATGTTCTCAGTATCA
CTAGATACTTTAAAGAGCATCATATTAGAAATACTTTGACCTATATAAAAATATGATTGC
TGAATTTTACAGAGGATTTAGTTTAATAAGACCCAGATTCTGTAAGTTTACATTCTGAAA
TTCCAATTAAACGTATTCTCCATTTTTCCTACAAATCTTATACAGTAAATGTTTCCAGTT
GTGCAAAAGCAAATTCTTAGCTTTCATTAGAAACTCTGGTTCTGAATTATAATCATAGAT
TTATATAATTTAACTGTTAGATCTATAAAAATGACATTAAAGTATGTGCAATATTACTGA
TGGAAGTAAAACATTTTCAAGTAAGTAATAAAGATTGTTATTAAAATACTGTCTGTTAAC
TTATCTGGCCCTCAGATTCCTCATTTATACAGTAAGAGTGTTAGGTGATTCCTGAGGTCC
GTTCCACATCTGAAGTTCTCTGCTCTCACTACTCAGACCATAGAGAAGTGAGTTGCAGTT
ACTCAGTAAGGTTACTCTCTAATGGAAAGACTGTATTTGATGCCTATTAATTCTGAGAGA
TTAAAAAATGTAAAATCACAGGTTTGTGTAGCTATATCTTTCTTAAATGTACATGATTTA
TGTACGTTGCTTTTAGAGAGTTAACTAGTTTAGGTAATTTTTATTCAATCGCGTACTGCT
GTATTCAGTTTGGATACTTTTATTTTTCATTTGCAAAACCAACCAAAAATACTAATCCAG
ATTCTCTTAGTTTTCCCTAGCTGTCAGTGTGGTTTTCAGTGCACAATGAACTGTTGAAAC
CATTTGGCTATTACTGAATGTTCCAGCATCTAAGAGCATAGATAGAACTTGGGTGAGGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|38112347|gb|AAR11262.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38112347|gb|AAR11262.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               120-697, gnl|bosTau2|chr3 (5484733-5485298)
               

               
               120-697, gnl|Hg17|chr15 (50393243-50392663)
               

               
               120-697, gnl|Mm7|chr9 (75255080-75255619)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-697, gnl|bosTau2|chr3 (5484733-5485298)
               

               
               120-697, gnl|Hg17|chr15 (50393243-50392663)
               

               
               120-697, gnl|Mm7|chr9 (75255080-75255619)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ecc (0.46014)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.46014)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	120-697, gnl\|bosTau2\|chr3 (5484733-5485298)
	120-697, gnl\|Hg17\|chr15 (50393243-50392663)
	120-697, gnl\|Mm7\|chr9 (75255080-75255619)

	ecc (0.46014)
	fco (0.314416)
	fce (0.271592)
	mgp (0.230681)
	ece (0.229305)
	fty (0.17584)
	rec (0.17307)
	liv (0.146284)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	clu (0.119646)
	pgl (0.118483)
	spc (0.113366)