Non-Coding RNA Search

Ss1.1-Lym2-sn52_D04.f.5

Sequence:


               
               TTTTAATTTAAAAACACAAAGGCCTAAAGAAATGTATCTTATAATTTTTTTAATTTTTGA
AAAGCTCATTTAATGAATCGTGCACGAATGAATTCTATATATATAAAATATACATATATA
GCTCTATATTTGGGGGGGGGCGCTCTGTCTCTTTTATTTCTCTCTCATTTTAAAAATGAA
GTGTCATTGCCTTTGTCTGTGGTTCAACCATCCAGCTCCCAGCTGGCTAAACTTTGCCTC
CAGTGGTTCAAGACAGGAAACTCGTAGGGGTAGCAGGAGACCCGGAAATGAAGACGCCCG
CCCCAGCGCGGGGCAGGGTCCGCAGCCCAGCTGCCCCTCTCCCAGAGGCTGCGGGTGGAG
AAAACAGCTTGTGTTGGGTGCGGGTTTTGGTTCTGTTGTTCTGGATGCGGTTGTTTCTGG
GCCAGGGGAGGGGGGTCTGTGCTGATACTCTGTCTTGTACGTTTTGTTCTGCTGCTCTTC
AGTATCGTATCAACGCCAGGAAGGGGGGCGTGAGAAGCCTCTTTGGCCCCCCAAATAAAT
TGTCACATTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAATTTAAAAACACAAAGGCCTAAAGAAATGTATCTTATAATTTTTTTAATTTTTGA
AAAGCTCATTTAATGAATCGTGCACGAATGAATTCTATATATATAAAATATACATATATA
GCTCTATATTTGGGGGGGGGCGCTCTGTCTCTTTTATTTCTCTCTCATTTTAAAAATGAA
GTGTCATTGCCTTTGTCTGTGGTTCAACCATCCAGCTCCCAGCTGGCTAAACTTTGCCTC
CAGTGGTTCAAGACAGGAAACTCGTAGGGGTAGCAGGAGACCCGGAAATGAAGACGCCCG
CCCCAGCGCGGGGCAGGGTCCGCAGCCCAGCTGCCCCTCTCCCAGAGGCTGCGGGTGGAG
AAAACAGCTTGTGTTGGGTGCGGGTTTTGGTTCTGTTGTTCTGGATGCGGTTGTTTCTGG
GCCAGGGGAGGGGGGTCTGTGCTGATACTCTGTCTTGTACGTTTTGTTCTGCTGCTCTTC
AGTATCGTATCAACGCCAGGAAGGGGGGCGTGAGAAGCCTCTTTGGCCCCCCAAATAAAT
TGTCACATTCCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-379, - strand, RNAz p=0.985329

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-379, - strand, RNAz p=0.985329

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr5 (69205679-69206229)
               

               
               1-552, gnl|Hg17|chr22 (37582505-37581975)
               

               
               1-552, gnl|Mm7|chr15 (79908537-79908036)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr5 (69205679-69206229)
               

               
               1-552, gnl|Hg17|chr22 (37582505-37581975)
               

               
               1-552, gnl|Mm7|chr15 (79908537-79908036)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.593354)
               

               
               eje (0.197668)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               eje (0.197668)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)

	1-552, gnl\|bosTau2\|chr5 (69205679-69206229)
	1-552, gnl\|Hg17\|chr22 (37582505-37581975)
	1-552, gnl\|Mm7\|chr15 (79908537-79908036)

	fcc (0.593354)
	eje (0.197668)
	fhi (0.169578)
	hyp (0.142837)
	lnt (0.142308)
	cov (0.132153)