Ss1.1-Lym2-sn53_D02.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTCCCTGTAACAGGGTCAAGCCCTACGTGCACGGTCCCCCCCAGGACCTGTCTGTTCA TCTTTGGTATGCTGGCCCCATGGAGCGTGCTGGGGCAGAAAGCATCCTCACCAACCGCTC GGATGGGACGTTCTTGGTGCGGCAGAGGGTGAAGGATGCTGCAGAATTTGCCATCAGCAT TAAGTATAATGTTGAAGTCAAGCATATTAAAATCATGACGGGAGAAGGACTCTACCGGAT TACAGAAAAGAAGGCTTTCCGAGGGCTTACGGAGCTGGTTGAATTCTACCAACAGAACTC CCTGAAAGATTGCTTCAAGTCACTGGACACCACCCTGCAGTTCCCCTTCAAGGAGCCTGA GAGGAGAGCCATCAGCAAACCTCCAGCGGGAAGCACCAAGTACTTTGGAACAGCCAAAGC CCGTTATGACTTCTGCGCCCGGGACCGATCGGAACTGTCCCTGAAGGAGGGTGACATCAT CAAGATCCTGAACAAGAAGGGGCAGCAGGGCTGGTGGCGAGGGGAGATTTATGGCCGGGT TGGCTGGTTCCCCTCCAATTATGTGGAAGAAGATTATTCTGAGTACTGCTGAGCTTTGGC ACATTGGCAAAGAGATGAGAAACTACTCTCGGCTCTGAGCCCAGGATGAACAGGCAGCAG GGCCAGTGGCTTTGACAGGTCCTGGTGGGCTGAGAGCCCAGGATGAATGGTAGAGAGTCA GTGTGCAGGTGGCAGGGCTCCTGGGATGTTGCCCTGGTGCAATTAATTTATAACACACTG ATTTCCTTCTGGGTCCCCTTGAGAAGGCGGGACTCAAGGCAATAGCTTTTAATAAAATGA TAATTGGAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTCCCTGTAACAGGGTCAAGCCCTACGTGCACGGTCCCCCCCAGGACCTGTCTGTTCA TCTTTGGTATGCTGGCCCCATGGAGCGTGCTGGGGCAGAAAGCATCCTCACCAACCGCTC GGATGGGACGTTCTTGGTGCGGCAGAGGGTGAAGGATGCTGCAGAATTTGCCATCAGCAT TAAGTATAATGTTGAAGTCAAGCATATTAAAATCATGACGGGAGAAGGACTCTACCGGAT TACAGAAAAGAAGGCTTTCCGAGGGCTTACGGAGCTGGTTGAATTCTACCAACAGAACTC CCTGAAAGATTGCTTCAAGTCACTGGACACCACCCTGCAGTTCCCCTTCAAGGAGCCTGA GAGGAGAGCCATCAGCAAACCTCCAGCGGGAAGCACCAAGTACTTTGGAACAGCCAAAGC CCGTTATGACTTCTGCGCCCGGGACCGATCGGAACTGTCCCTGAAGGAGGGTGACATCAT CAAGATCCTGAACAAGAAGGGGCAGCAGGGCTGGTGGCGAGGGGAGATTTATGGCCGGGT TGGCTGGTTCCCCTCCAATTATGTGGAAGAAGATTATTCTGAGTACTGCTGAGCTTTGGC ACATTGGCAAAGAGATGAGAAACTACTCTCGGCTCTGAGCCCAGGATGAACAGGCAGCAG GGCCAGTGGCTTTGACAGGTCCTGGTGGGCTGAGAGCCCAGGATGAATGGTAGAGAGTCA GTGTGCAGGTGGCAGGGCTCCTGGGATGTTGCCCTGGTGCAATTAATTTATAACACACTG ATTTCCTTCTGGGTCCCCTTGAGAAGGCGGGACTCAAGGCAATAGCTTTTAATAAAATGA TAATTGGAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 66-186, gnl|bosTau2|chr7 (14473138-14473018) | |
| 66-186, gnl|canFam2|chr20 (56435359-56435201) | |
| 66-186, gnl|danRer3|chr21 (8897565-8897430) | |
| 66-186, gnl|dasNov1|scaffold_33 (16694-16558) | |
| 66-186, gnl|echTel1|scaffold_245219 (3283-3441) | |
| 66-186, gnl|fr1|chrUn (183159964-183159820) | |
| 66-186, gnl|hg17|chr19 (6798983-6799141) | |
| 66-186, gnl|Hg17|chr19 (6799008-6799128) | |
| 66-186, gnl|loxAfr1|scaffold_66166 (8837-8995) | |
| 66-186, gnl|mm7|chr3 (109475507-109475651) | |
| 66-186, gnl|Mm7|chr3 (109475529-109475649) | |
| 66-186, gnl|monDom2|scaffold_85 (5318961-5319118) | |
| 66-186, gnl|oryCun1|scaffold_202021 (115344-115213) | |
| 66-186, gnl|panTro1|chr20 (7180114-7180272) | |
| 66-186, gnl|rheMac2|chr19 (6745185-6745343) | |
| 66-186, gnl|rn3|chrUn (64628833-64628991) | |
| 66-186, gnl|tetNig1|chr18 (8686117-8685993) | |
| 66-186, gnl|xenTro1|scaffold_1043 (20776-20627) | |
| 271-386, gnl|bosTau2|chr7 (14465928-14465813) | |
| 271-386, gnl|canFam2|chr20 (56431810-56431654) | |
| 271-386, gnl|danRer3|chr21 (8895719-8895573) | |
| 271-386, gnl|dasNov1|scaffold_164172 (4417-4576) | |
| 271-386, gnl|echTel1|scaffold_267189 (2778-2935) | |
| 271-386, gnl|fr1|chrUn (183159345-183159207) | |
| 271-386, gnl|hg17|chr19 (6803969-6804129) | |
| 271-386, gnl|Hg17|chr19 (6803975-6804090) | |
| 271-386, gnl|loxAfr1|scaffold_99605 (2091-2175) | |
| 271-386, gnl|mm7|chr17 (55528091-55528244) | |
| 271-386, gnl|Mm7|chr17 (55528091-55528206) | |
| 271-386, gnl|monDom2|scaffold_85 (5320939-5321091) | |
| 271-386, gnl|oryCun1|scaffold_173307 (16619-16509) | |
| 271-386, gnl|panTro1|chr20 (7185137-7185297) | |
| 271-386, gnl|rheMac2|chr19 (6749412-6749572) | |
| 271-386, gnl|rn3|chrUn (64633995-64634137) | |
| 271-386, gnl|tetNig1|chr18 (8685644-8685547) | |
| 271-386, gnl|xenTro1|scaffold_1043 (17450-17304) | |
| 535-848, gnl|bosTau2|chr7 (14462036-14461729) | |
| 535-848, gnl|Hg17|chr19 (6808061-6808376) | |
| 535-848, gnl|Mm7|chr17 (55537425-55537729) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 66-186, gnl|bosTau2|chr7 (14473138-14473018) | |
| 66-186, gnl|canFam2|chr20 (56435359-56435201) | |
| 66-186, gnl|danRer3|chr21 (8897565-8897430) | |
| 66-186, gnl|dasNov1|scaffold_33 (16694-16558) | |
| 66-186, gnl|echTel1|scaffold_245219 (3283-3441) | |
| 66-186, gnl|fr1|chrUn (183159964-183159820) | |
| 66-186, gnl|hg17|chr19 (6798983-6799141) | |
| 66-186, gnl|Hg17|chr19 (6799008-6799128) | |
| 66-186, gnl|loxAfr1|scaffold_66166 (8837-8995) | |
| 66-186, gnl|mm7|chr3 (109475507-109475651) | |
| 66-186, gnl|Mm7|chr3 (109475529-109475649) | |
| 66-186, gnl|monDom2|scaffold_85 (5318961-5319118) | |
| 66-186, gnl|oryCun1|scaffold_202021 (115344-115213) | |
| 66-186, gnl|panTro1|chr20 (7180114-7180272) | |
| 66-186, gnl|rheMac2|chr19 (6745185-6745343) | |
| 66-186, gnl|rn3|chrUn (64628833-64628991) | |
| 66-186, gnl|tetNig1|chr18 (8686117-8685993) | |
| 66-186, gnl|xenTro1|scaffold_1043 (20776-20627) | |
| 271-386, gnl|bosTau2|chr7 (14465928-14465813) | |
| 271-386, gnl|canFam2|chr20 (56431810-56431654) | |
| 271-386, gnl|danRer3|chr21 (8895719-8895573) | |
| 271-386, gnl|dasNov1|scaffold_164172 (4417-4576) | |
| 271-386, gnl|echTel1|scaffold_267189 (2778-2935) | |
| 271-386, gnl|fr1|chrUn (183159345-183159207) | |
| 271-386, gnl|hg17|chr19 (6803969-6804129) | |
| 271-386, gnl|Hg17|chr19 (6803975-6804090) | |
| 271-386, gnl|loxAfr1|scaffold_99605 (2091-2175) | |
| 271-386, gnl|mm7|chr17 (55528091-55528244) | |
| 271-386, gnl|Mm7|chr17 (55528091-55528206) | |
| 271-386, gnl|monDom2|scaffold_85 (5320939-5321091) | |
| 271-386, gnl|oryCun1|scaffold_173307 (16619-16509) | |
| 271-386, gnl|panTro1|chr20 (7185137-7185297) | |
| 271-386, gnl|rheMac2|chr19 (6749412-6749572) | |
| 271-386, gnl|rn3|chrUn (64633995-64634137) | |
| 271-386, gnl|tetNig1|chr18 (8685644-8685547) | |
| 271-386, gnl|xenTro1|scaffold_1043 (17450-17304) | |
| 535-848, gnl|bosTau2|chr7 (14462036-14461729) | |
| 535-848, gnl|Hg17|chr19 (6808061-6808376) | |
| 535-848, gnl|Mm7|chr17 (55537425-55537729) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| lnt (0.426925) | |
| cst (0.280073) | |
| fty (0.17584) | |
| cag (0.151194) | |
| spl (0.143184) | |
| cly (0.120642) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.426925) | |
| cst (0.280073) | |
| fty (0.17584) | |
| cag (0.151194) | |
| spl (0.143184) | |
| cly (0.120642) | |
| nbm (0.0993246) |