Ss1.1-Lym2-sn54_A02.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGAAGAGATTACTTCAAGTTACCTGTGAACAGATGCCACCATTCATATGTGGAGCTCT ATATCTTGTGTCTGAGATTCTTAAAGCAAAACCGGGTTTAAGAAGTCAACTAGATGATCA TCCGGAATCTGATGAGGAAGAAAATTTTATTGACATAGATGATGAAGAAACAGAAAAATT CACGGATGCAGATAAAGAAACAGAAACAGATACTGCGGAAAAAGTTGAGGTGGAAGAAAC TGTGTCTGAAAGACATGTGGAAACCAAAAAATTAGAATCTGCTTCTTGGGTGCACTTTGA TAATTTGAAAGGTGGCAAACAGCTAAACACGTATGATCCATTCAGTAGAAACCCTTTGTT CTGTGGAGCTGAAAATACAAGTCTTTGGGAACTCAAAAAGCTATCTGAGCATTTTCATCC CTCTGTGGCTCTTTTTGCAAAGACTATCCTTCAGGGAAATTACATTGAATATTCAGGGGA TCCACTACAGGATTTCACACTAATGAGATTCTTGGATCGATTTGTATACCGAAACCCAAA GCCACATAAAGGCAAAGAAAACACAGAAAGTGTTGTGATGCAGCCAAAAAGAAAACATTT TATGAAGGATATTCGTAGTCTTGCTGTTAACAGTAAGGAATTCCTTGCAAAAGAAGAAAG CCAAATACCAGTGGATGAAGTGTTTTTCTATAGGTATTATAAAAAAGTTGCTAAAGAGAA GCAAAAAAGGAATGAAGATGAAGAAAGTATAGAAGATGTGGATGATGAGGAATTTGAAAG GATGATTGACACATTTGAAGATGATAATTGTTTCATCTCGGGAAAGGATGACCTCGATTT TGCCAGCAACATGAAGAAGAAGAAGGCAAAAGGAGCTAAGGATGACTCGGAAGACGAAGA TTCAGAAGACGATGACCTTGATAACTTGGATGATGATGAAGTTTCTTTAGGAAGTATGAA TGAAGAATTTGCTGAACTTGAGGAAGATGGAGGAACATTCATGGATGTGTTGGAGGATGA AAACGAGGGCATTCCAGAACTTGATGAAGTCAGCTCGAAAGTCAATAGTAAGAAAAGCAA GAGAAGTGCAAATGATTTTGACTTTGCTGGGTCATTTCAAGGACCAAGAAAAAAAAGGAA AAGAAATCTTGATGACACCAACCTGTTTGTATCTGCTGAAGAGTTTGGGCACCTATTGGA TGAAAACATGGGATCCAAGTTTGACAACATTGGCATGAATGCTATGGCTAACAGAGATAA TGCAAGTCTCAAACAGCTTAGGTGGGAGGCTGAACGGGATGACTGGTTGCACAACAGAGA CGTGAAAAGCATCATTAAGAGAAAGAAAAATTTCAAAAAGAGGAGGCCAAAAATCACTCA AAAAATTAAAAAGCAAAGAAAATGAGTTTTTCTAAGTAAATTAAAATTCTACTTACTAAT TTTTGCTGTTCAGCCATTTTTCTTGATCTTGCTCTCTGATTCCGTACATCCCAGACTGTT CAATGGATTTGTAATAAACTATAAATAAAAATAACTGTCATTTATAAAATCATGTAAAAG TATTAAAATTAAACTGTACTGAGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGAAGAGATTACTTCAAGTTACCTGTGAACAGATGCCACCATTCATATGTGGAGCTCT ATATCTTGTGTCTGAGATTCTTAAAGCAAAACCGGGTTTAAGAAGTCAACTAGATGATCA TCCGGAATCTGATGAGGAAGAAAATTTTATTGACATAGATGATGAAGAAACAGAAAAATT CACGGATGCAGATAAAGAAACAGAAACAGATACTGCGGAAAAAGTTGAGGTGGAAGAAAC TGTGTCTGAAAGACATGTGGAAACCAAAAAATTAGAATCTGCTTCTTGGGTGCACTTTGA TAATTTGAAAGGTGGCAAACAGCTAAACACGTATGATCCATTCAGTAGAAACCCTTTGTT CTGTGGAGCTGAAAATACAAGTCTTTGGGAACTCAAAAAGCTATCTGAGCATTTTCATCC CTCTGTGGCTCTTTTTGCAAAGACTATCCTTCAGGGAAATTACATTGAATATTCAGGGGA TCCACTACAGGATTTCACACTAATGAGATTCTTGGATCGATTTGTATACCGAAACCCAAA GCCACATAAAGGCAAAGAAAACACAGAAAGTGTTGTGATGCAGCCAAAAAGAAAACATTT TATGAAGGATATTCGTAGTCTTGCTGTTAACAGTAAGGAATTCCTTGCAAAAGAAGAAAG CCAAATACCAGTGGATGAAGTGTTTTTCTATAGGTATTATAAAAAAGTTGCTAAAGAGAA GCAAAAAAGGAATGAAGATGAAGAAAGTATAGAAGATGTGGATGATGAGGAATTTGAAAG GATGATTGACACATTTGAAGATGATAATTGTTTCATCTCGGGAAAGGATGACCTCGATTT TGCCAGCAACATGAAGAAGAAGAAGGCAAAAGGAGCTAAGGATGACTCGGAAGACGAAGA TTCAGAAGACGATGACCTTGATAACTTGGATGATGATGAAGTTTCTTTAGGAAGTATGAA TGAAGAATTTGCTGAACTTGAGGAAGATGGAGGAACATTCATGGATGTGTTGGAGGATGA AAACGAGGGCATTCCAGAACTTGATGAAGTCAGCTCGAAAGTCAATAGTAAGAAAAGCAA GAGAAGTGCAAATGATTTTGACTTTGCTGGGTCATTTCAAGGACCAAGAAAAAAAAGGAA AAGAAATCTTGATGACACCAACCTGTTTGTATCTGCTGAAGAGTTTGGGCACCTATTGGA TGAAAACATGGGATCCAAGTTTGACAACATTGGCATGAATGCTATGGCTAACAGAGATAA TGCAAGTCTCAAACAGCTTAGGTGGGAGGCTGAACGGGATGACTGGTTGCACAACAGAGA CGTGAAAAGCATCATTAAGAGAAAGAAAAATTTCAAAAAGAGGAGGCCAAAAATCACTCA AAAAATTAAAAAGCAAAGAAAATGAGTTTTTCTAAGTAAATTAAAATTCTACTTACTAAT TTTTGCTGTTCAGCCATTTTTCTTGATCTTGCTCTCTGATTCCGTACATCCCAGACTGTT CAATGGATTTGTAATAAACTATAAATAAAAATAACTGTCATTTATAAAATCATGTAAAAG TATTAAAATTAAACTGTACTGAGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1266-1385, + strand, RNAz p=0.599055 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1266-1385, + strand, RNAz p=0.599055 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_005760, + |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 124-314, gnl|bosTau2|chr11 (18812496-18812303) | |
| 124-314, gnl|canFam2|chr17 (32679728-32679920) | |
| 124-314, gnl|dasNov1|scaffold_130309 (1384-1186) | |
| 124-314, gnl|echTel1|scaffold_317676 (15294-15490) | |
| 124-314, gnl|fr1|chrUn (176221700-176221571) | |
| 124-314, gnl|galGal2|chr3 (29815186-29815358) | |
| 124-314, gnl|hg17|chr2 (37361160-37361352) | |
| 124-314, gnl|Hg17|chr2 (37361358-37361171) | |
| 124-314, gnl|loxAfr1|scaffold_3391 (47721-47960) | |
| 124-314, gnl|mm7|chr17 (77231850-77232045) | |
| 124-314, gnl|Mm7|chr17 (77232051-77231861) | |
| 124-314, gnl|monDom2|scaffold_23 (39896174-39896372) | |
| 124-314, gnl|oryCun1|scaffold_212226 (13518-13718) | |
| 124-314, gnl|panTro1|chr12 (38826934-38827126) | |
| 124-314, gnl|rheMac2|chr13 (37205524-37205716) | |
| 124-314, gnl|rn3|chr6 (1710097-1710292) | |
| 446-557, gnl|bosTau2|chr11 (18807416-18807305) | |
| 446-557, gnl|canFam2|chr17 (32675780-32675991) | |
| 446-557, gnl|danRer3|chr25 (10005306-10005476) | |
| 446-557, gnl|echTel1|scaffold_317676 (10840-11046) | |
| 446-557, gnl|fr1|chrUn (176222369-176222177) | |
| 446-557, gnl|galGal2|chr3 (29813089-29813319) | |
| 446-557, gnl|hg17|chr2 (37355010-37355224) | |
| 446-557, gnl|Hg17|chr2 (37355221-37355110) | |
| 446-557, gnl|loxAfr1|scaffold_3391 (43354-43540) | |
| 446-557, gnl|mm7|chr17 (77226544-77226751) | |
| 446-557, gnl|Mm7|chr17 (77226748-77226637) | |
| 446-557, gnl|monDom2|scaffold_1 (134664076-134663871) | |
| 446-557, gnl|oryCun1|scaffold_212226 (7614-7829) | |
| 446-557, gnl|panTro1|chr12 (38820728-38820942) | |
| 446-557, gnl|rheMac2|chr13 (37200062-37200272) | |
| 446-557, gnl|rn3|chr6 (1705333-1705546) | |
| 446-557, gnl|xenTro1|scaffold_1221 (40263-40015) | |
| 662-797, gnl|bosTau2|chr11 (18803218-18803076) | |
| 662-797, gnl|canFam2|chr17 (32673094-32673185) | |
| 662-797, gnl|danRer3|chr25 (10002268-10002374) | |
| 662-797, gnl|dasNov1|scaffold_160351 (43313-43217) | |
| 662-797, gnl|echTel1|scaffold_317676 (9243-9343) | |
| 662-797, gnl|fr1|chrUn (176222811-176222727) | |
| 662-797, gnl|galGal2|chr3 (29808647-29808747) | |
| 662-797, gnl|hg17|chr2 (37352639-37352736) | |
| 662-797, gnl|Hg17|chr2 (37352780-37352650) | |
| 662-797, gnl|mm7|chr17 (77223770-77223871) | |
| 662-797, gnl|Mm7|chr17 (77223921-77223782) | |
| 662-797, gnl|monDom2|scaffold_23 (39888499-39888597) | |
| 662-797, gnl|panTro1|chr12 (38818363-38818460) | |
| 662-797, gnl|rheMac2|chr13 (37197893-37197990) | |
| 662-797, gnl|rn3|chr6 (1702702-1702803) | |
| 662-797, gnl|xenTro1|scaffold_1221 (42467-42366) | |
| 844-1037, gnl|bosTau2|chr11 (18802273-18802083) | |
| 844-1037, gnl|Hg17|chr2 (37350836-37350637) | |
| 844-1037, gnl|Mm7|chr17 (77222871-77222684) | |
| 1266-1591, gnl|bosTau2|chr11 (18797787-18797454) | |
| 1266-1591, gnl|Hg17|chr2 (37340697-37340361) | |
| 1266-1591, gnl|Mm7|chr17 (77220571-77220251) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-314, gnl|bosTau2|chr11 (18812496-18812303) | |
| 124-314, gnl|canFam2|chr17 (32679728-32679920) | |
| 124-314, gnl|dasNov1|scaffold_130309 (1384-1186) | |
| 124-314, gnl|echTel1|scaffold_317676 (15294-15490) | |
| 124-314, gnl|fr1|chrUn (176221700-176221571) | |
| 124-314, gnl|galGal2|chr3 (29815186-29815358) | |
| 124-314, gnl|hg17|chr2 (37361160-37361352) | |
| 124-314, gnl|Hg17|chr2 (37361358-37361171) | |
| 124-314, gnl|loxAfr1|scaffold_3391 (47721-47960) | |
| 124-314, gnl|mm7|chr17 (77231850-77232045) | |
| 124-314, gnl|Mm7|chr17 (77232051-77231861) | |
| 124-314, gnl|monDom2|scaffold_23 (39896174-39896372) | |
| 124-314, gnl|oryCun1|scaffold_212226 (13518-13718) | |
| 124-314, gnl|panTro1|chr12 (38826934-38827126) | |
| 124-314, gnl|rheMac2|chr13 (37205524-37205716) | |
| 124-314, gnl|rn3|chr6 (1710097-1710292) | |
| 446-557, gnl|bosTau2|chr11 (18807416-18807305) | |
| 446-557, gnl|canFam2|chr17 (32675780-32675991) | |
| 446-557, gnl|danRer3|chr25 (10005306-10005476) | |
| 446-557, gnl|echTel1|scaffold_317676 (10840-11046) | |
| 446-557, gnl|fr1|chrUn (176222369-176222177) | |
| 446-557, gnl|galGal2|chr3 (29813089-29813319) | |
| 446-557, gnl|hg17|chr2 (37355010-37355224) | |
| 446-557, gnl|Hg17|chr2 (37355221-37355110) | |
| 446-557, gnl|loxAfr1|scaffold_3391 (43354-43540) | |
| 446-557, gnl|mm7|chr17 (77226544-77226751) | |
| 446-557, gnl|Mm7|chr17 (77226748-77226637) | |
| 446-557, gnl|monDom2|scaffold_1 (134664076-134663871) | |
| 446-557, gnl|oryCun1|scaffold_212226 (7614-7829) | |
| 446-557, gnl|panTro1|chr12 (38820728-38820942) | |
| 446-557, gnl|rheMac2|chr13 (37200062-37200272) | |
| 446-557, gnl|rn3|chr6 (1705333-1705546) | |
| 446-557, gnl|xenTro1|scaffold_1221 (40263-40015) | |
| 662-797, gnl|bosTau2|chr11 (18803218-18803076) | |
| 662-797, gnl|canFam2|chr17 (32673094-32673185) | |
| 662-797, gnl|danRer3|chr25 (10002268-10002374) | |
| 662-797, gnl|dasNov1|scaffold_160351 (43313-43217) | |
| 662-797, gnl|echTel1|scaffold_317676 (9243-9343) | |
| 662-797, gnl|fr1|chrUn (176222811-176222727) | |
| 662-797, gnl|galGal2|chr3 (29808647-29808747) | |
| 662-797, gnl|hg17|chr2 (37352639-37352736) | |
| 662-797, gnl|Hg17|chr2 (37352780-37352650) | |
| 662-797, gnl|mm7|chr17 (77223770-77223871) | |
| 662-797, gnl|Mm7|chr17 (77223921-77223782) | |
| 662-797, gnl|monDom2|scaffold_23 (39888499-39888597) | |
| 662-797, gnl|panTro1|chr12 (38818363-38818460) | |
| 662-797, gnl|rheMac2|chr13 (37197893-37197990) | |
| 662-797, gnl|rn3|chr6 (1702702-1702803) | |
| 662-797, gnl|xenTro1|scaffold_1221 (42467-42366) | |
| 844-1037, gnl|bosTau2|chr11 (18802273-18802083) | |
| 844-1037, gnl|Hg17|chr2 (37350836-37350637) | |
| 844-1037, gnl|Mm7|chr17 (77222871-77222684) | |
| 1266-1591, gnl|bosTau2|chr11 (18797787-18797454) | |
| 1266-1591, gnl|Hg17|chr2 (37340697-37340361) | |
| 1266-1591, gnl|Mm7|chr17 (77220571-77220251) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| tes (0.415628) | |
| lyg (0.399308) | |
| tra (0.369276) | |
| kid (0.259471) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ldo (0.0970026) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| lyg (0.399308) | |
| tra (0.369276) | |
| kid (0.259471) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ldo (0.0970026) |