Ss1.1-Lym2-sn56_C11.f1.5
|
CGTGCTTTCCCGCGCGGCCAGGACTCCCCAGCGTGCGGGCGGCAGGGACGCCGAGGTTTG
GCCTGCCGGCGCAAGGCGGATCCGAGAGAGTGGCCCATTTGAGCCGGGCCTCGCTGCTGA
AGATGAAGAGCGGAGCGGGGCTCAGGCTGAGCTGCCTTATCCCGTGGGTCTGAGCGCCCA
CCCCCGCCGCCGCCGGGACTGCGGCCCCCTGGGCTTCGGCAATGAGCGCTCGGTGACTGC
GACTCGTGGACCCGGGACTTCGGGAGGCAATGCTGGTTCGGCTTTGAGTGCCTTGGGGAC
AGCGAATAAACCCTAAAATGGAGGACTTTTCTACCAGGACCTACGGCACCAGTGGCCTGG
ACAACAGACCTCTGTTCGGAGAGACGTCGGCCAAGGATCGAATCATCAATTTAGTTGTCG
GCAGCTTAACATCCTTATTGATTCTAGTAACGCTGATCAGTGCTTTTGTTTTCCCTCAAC
TACCTCCAAAACCACTGAATATATTTTTTGCGGTCTGCATCTCTTTGAGTAGTATTACTG
CCTGCATACTTATTTACTGGTATCGACAAGGAGACTTAGAACCGAAATTTAGAAACCTAA
TTTACTATATCTTATTTTCTATCATCATGTTATGTATATGTGCAAATTTGTATTTCCATG
ATGTGGGAAAGTGAGGCTGCCAAGGAGAAATACTTACCAGGTCTCTTCAGAGCTCTATAT
TTGGACTTGACTAAGAGCTGGATAAGGTATGCTGAAGAATCTCTTGCAGAAGCCTGACAC
ATGATTTTCATGTTAACTGTAAATCTAAATCCCCTCTTGCAGGGGAAACATATCCTAGAT
CAACTTGCTTTTTCTTTAAGGAGCTGGTGTTGCATTTAAACATTCCCCCTTAAAGCTCGA
ACGGCACAAGTCATTTTCACTTTTGAAATTAAAACTTTTTATAATGTAATTGCATGGCGA
AAGGCTATGTAACAAACAATCTTGCATTTTAAGACAAATATTATTTTATTTCTGTTAAAT
TGAATATACAATTATTGTTCCCTAGGCAACCACTTTTGCTTATAACTACAATTTAATTTC
ACATTAACAAAACACAGACGGTGAAAAGACAACTTTGATTGTGTAGATCTAATTACAATA
ATAAATAAAATAATTTATACAAGTTTTTTTTTTTTTTTGTGACTTTTCTATAGGGGTCAT
ATTCATTAAAGCCCTAGAGGCTAATTTTGGCTTAACCTTCGCTAGTACAGGAATGACTCT
TGATTTGTTTCCTTTCATTACAGAAGTAAATTTTTTAAAAATTGCCTGCGGGAGAAGTTG
TATCACATCCCCACCAGTTAATGCACTAAGTGAACGGCAAACTTTGATACTATACTCTCC
TCAACTATTTCCTGGGCAATTTATATGTAAAACATGGGAGAAAAGGTCATGGTATAGGAT
AGGCAACTCTACTTCCTTTCTCATTTAGTTTTACTTCAAAGTGCTAACTTTGTAAACTGA
TGACAGTGGGTTCTGAGAGGGTGAAAACTCAGCTTCTGCTGAATTTTTGTTTTACTACTG
TCACCCATAGTCCCTTTAAAAGTTATAAAAGAAACCTGTAGTGAATTTTCTTAACTCTTA
ATGCTTTCCTCTTTATCCGGCCCAAATCAGCTCCCACTGCCAGCAATGGGTAAAGCAAAA
GTAACCACCACAAAATCACCTCAGGTCTCAAACTTCTTTAAAATGTGAATCTCTGTGGAG
AAGTTCACTGGTAAGCTCTATACCATGTTGATGTGACTTCTCTGAAATATAAACAGGCCT
ACTAGAGACTGGTTAGAGGGCCGTATCTGGTCTTTAGAGATAAACCTTACTGCTTTAAAA
ACAGTAGTTAAGCTTTGGTGATCTTAAACTTTTCTCAGCTAAAGTGAATGAAATTCCCCG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGTGCTTTCCCGCGCGGCCAGGACTCCCCAGCGTGCGGGCGGCAGGGACGCCGAGGTTTG
GCCTGCCGGCGCAAGGCGGATCCGAGAGAGTGGCCCATTTGAGCCGGGCCTCGCTGCTGA
AGATGAAGAGCGGAGCGGGGCTCAGGCTGAGCTGCCTTATCCCGTGGGTCTGAGCGCCCA
CCCCCGCCGCCGCCGGGACTGCGGCCCCCTGGGCTTCGGCAATGAGCGCTCGGTGACTGC
GACTCGTGGACCCGGGACTTCGGGAGGCAATGCTGGTTCGGCTTTGAGTGCCTTGGGGAC
AGCGAATAAACCCTAAAATGGAGGACTTTTCTACCAGGACCTACGGCACCAGTGGCCTGG
ACAACAGACCTCTGTTCGGAGAGACGTCGGCCAAGGATCGAATCATCAATTTAGTTGTCG
GCAGCTTAACATCCTTATTGATTCTAGTAACGCTGATCAGTGCTTTTGTTTTCCCTCAAC
TACCTCCAAAACCACTGAATATATTTTTTGCGGTCTGCATCTCTTTGAGTAGTATTACTG
CCTGCATACTTATTTACTGGTATCGACAAGGAGACTTAGAACCGAAATTTAGAAACCTAA
TTTACTATATCTTATTTTCTATCATCATGTTATGTATATGTGCAAATTTGTATTTCCATG
ATGTGGGAAAGTGAGGCTGCCAAGGAGAAATACTTACCAGGTCTCTTCAGAGCTCTATAT
TTGGACTTGACTAAGAGCTGGATAAGGTATGCTGAAGAATCTCTTGCAGAAGCCTGACAC
ATGATTTTCATGTTAACTGTAAATCTAAATCCCCTCTTGCAGGGGAAACATATCCTAGAT
CAACTTGCTTTTTCTTTAAGGAGCTGGTGTTGCATTTAAACATTCCCCCTTAAAGCTCGA
ACGGCACAAGTCATTTTCACTTTTGAAATTAAAACTTTTTATAATGTAATTGCATGGCGA
AAGGCTATGTAACAAACAATCTTGCATTTTAAGACAAATATTATTTTATTTCTGTTAAAT
TGAATATACAATTATTGTTCCCTAGGCAACCACTTTTGCTTATAACTACAATTTAATTTC
ACATTAACAAAACACAGACGGTGAAAAGACAACTTTGATTGTGTAGATCTAATTACAATA
ATAAATAAAATAATTTATACAAGTTTTTTTTTTTTTTTGTGACTTTTCTATAGGGGTCAT
ATTCATTAAAGCCCTAGAGGCTAATTTTGGCTTAACCTTCGCTAGTACAGGAATGACTCT
TGATTTGTTTCCTTTCATTACAGAAGTAAATTTTTTAAAAATTGCCTGCGGGAGAAGTTG
TATCACATCCCCACCAGTTAATGCACTAAGTGAACGGCAAACTTTGATACTATACTCTCC
TCAACTATTTCCTGGGCAATTTATATGTAAAACATGGGAGAAAAGGTCATGGTATAGGAT
AGGCAACTCTACTTCCTTTCTCATTTAGTTTTACTTCAAAGTGCTAACTTTGTAAACTGA
TGACAGTGGGTTCTGAGAGGGTGAAAACTCAGCTTCTGCTGAATTTTTGTTTTACTACTG
TCACCCATAGTCCCTTTAAAAGTTATAAAAGAAACCTGTAGTGAATTTTCTTAACTCTTA
ATGCTTTCCTCTTTATCCGGCCCAAATCAGCTCCCACTGCCAGCAATGGGTAAAGCAAAA
GTAACCACCACAAAATCACCTCAGGTCTCAAACTTCTTTAAAATGTGAATCTCTGTGGAG
AAGTTCACTGGTAAGCTCTATACCATGTTGATGTGACTTCTCTGAAATATAAACAGGCCT
ACTAGAGACTGGTTAGAGGGCCGTATCTGGTCTTTAGAGATAAACCTTACTGCTTTAAAA
ACAGTAGTTAAGCTTTGGTGATCTTAAACTTTTCTCAGCTAAAGTGAATGAAATTCCCCG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
113-396, gnl|bosTau2|chr4 (13002389-13002099) |
|
113-396, gnl|Hg17|chr7 (86493686-86493392) |
|
113-396, gnl|Mm7|chr5 (9138760-9139040) |
| |
|
447-551, gnl|bosTau2|chr4 (12983443-12983339) |
|
447-551, gnl|Hg17|chr7 (86472012-86471908) |
|
447-551, gnl|Mm7|chr5 (9155103-9155207) |
| |
|
552-1908, gnl|bosTau2|chr4 (12982088-12980756) |
|
552-1908, gnl|Hg17|chr7 (86470725-86469378) |
|
552-1908, gnl|Mm7|chr5 (9156098-9157413) |
| |
|
736-838, gnl|bosTau2|chr3 (68634323-68634425) |
|
736-838, gnl|Hg17|chr7 (86470537-86470438) |
| |
|
980-1148, gnl|bosTau2|chr16 (31198077-31198245) |
|
980-1148, gnl|Hg17|chr7 (86470301-86470143) |
|
980-1148, gnl|Mm7|chr5 (9156510-9156677) |
| |
|
1182-1432, gnl|bosTau2|chr16 (31198599-31198848) |
|
1182-1432, gnl|Hg17|chr7 (86470112-86469884) |
|
1182-1432, gnl|Mm7|chr5 (9156716-9156948) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
113-396, gnl|bosTau2|chr4 (13002389-13002099) |
|
113-396, gnl|Hg17|chr7 (86493686-86493392) |
|
113-396, gnl|Mm7|chr5 (9138760-9139040) |
| |
|
447-551, gnl|bosTau2|chr4 (12983443-12983339) |
|
447-551, gnl|Hg17|chr7 (86472012-86471908) |
|
447-551, gnl|Mm7|chr5 (9155103-9155207) |
| |
|
552-1908, gnl|bosTau2|chr4 (12982088-12980756) |
|
552-1908, gnl|Hg17|chr7 (86470725-86469378) |
|
552-1908, gnl|Mm7|chr5 (9156098-9157413) |
| |
|
736-838, gnl|bosTau2|chr3 (68634323-68634425) |
|
736-838, gnl|Hg17|chr7 (86470537-86470438) |
| |
|
980-1148, gnl|bosTau2|chr16 (31198077-31198245) |
|
980-1148, gnl|Hg17|chr7 (86470301-86470143) |
|
980-1148, gnl|Mm7|chr5 (9156510-9156677) |
| |
|
1182-1432, gnl|bosTau2|chr16 (31198599-31198848) |
|
1182-1432, gnl|Hg17|chr7 (86470112-86469884) |
|
1182-1432, gnl|Mm7|chr5 (9156716-9156948) |
|
cbl (0.573987) |
|
fce (0.543183) |
|
lun (0.451467) |
|
sug (0.381874) |
|
sin (0.349895) |
|
nco (0.323468) |
|
fco (0.314416) |
|
bfe (0.299715) |
|
liv (0.292569) |
|
lyg (0.266205) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
col (0.195008) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ill (0.175593) |
|
rec (0.17307) |
|
duo (0.172801) |
|
nje (0.16592) |
|
cki (0.165235) |
|
mga (0.160205) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
cbl (0.573987) |
|
fce (0.543183) |
|
lun (0.451467) |
|
sug (0.381874) |
|
sin (0.349895) |
|
nco (0.323468) |
|
fco (0.314416) |
|
bfe (0.299715) |
|
liv (0.292569) |
|
lyg (0.266205) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
col (0.195008) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ill (0.175593) |
|
rec (0.17307) |
|
duo (0.172801) |
|
nje (0.16592) |
|
cki (0.165235) |
|
mga (0.160205) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
