Ss1.1-Lym2-sn58_B10.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTAACTATGTTCTTCAATCCATTTGTGGTGACTGAGCGGAGCCCAGTGACAGGATGGC TGGGCACAGATTGGTGTTGGTATTAGGAGACCTGCACATCCCACACCGATGCAACAGTTT ACCAGCTAAATTCAAAAAACTGCTGGTGCCAGGGAAGATTCAGCACATTCTCTGCACTGG AAACCTTTGCACCAAAGAGAGTTATGACTATCTCAAGACTCTGGCTGGTGATGTTCATAT TGTGAGAGGAGACTTCGATGAGAATCTTAATTATCCAGAACAGAAAGTTGTGACCGTTGG GCAGTTCAAAATTGGTTTGATCCATGGACATCAAGTTATTCCATGGGGAGATATGGCCAG CTTAGCCCTATTGCAGAGGCAGTTTGATGTGGACATTCTTATTTCGGGACACACACACAA ATTTGAAGCATTTGAGCATGAAAATAAATTCTACATTAATCCAGGTTCCGCCACTGGAGC ATATAATGCCTTGGAAACAAACATTATTCCTTCATTTGTGTTGATGGATATCCAGGCTTC TACAGTTGTCACTTATGTGTATCAGCTAATTGGAGATGATGTGAAAGTAGAACGAATTGA ATACAAAAAATCTTAAAGCCAGGCCTGTCTTGATGATTTTTCTGTTGGGCTTTTCTTTTT TTCATTCCCCTGTTCAACTCAAGTAATTAAACATTTAAGAGCCACAAAATTGTATCACTT TTATAATATTTTGCAGTAAAATATAATATCGTCTTCTGTTAATACAGTGTTCTAAGCTTC TTGTAAACTATAAGATTATATTTAGTTTAAGTATATGATTTCTATGAAAAAATGCCCACC ACACAGTATGGTCACATGTTAAGAAAAATTTATCCTTGTAAATATCCTCATAGTTGATAT TTGGAACTTTATTACCAAAGTAGTGCATGAGGAGAAAGAATCTAGACTTTCTTGTATACA TTTTTCTCTTCTCCAGTAATAAACAGTTACCTTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTAACTATGTTCTTCAATCCATTTGTGGTGACTGAGCGGAGCCCAGTGACAGGATGGC TGGGCACAGATTGGTGTTGGTATTAGGAGACCTGCACATCCCACACCGATGCAACAGTTT ACCAGCTAAATTCAAAAAACTGCTGGTGCCAGGGAAGATTCAGCACATTCTCTGCACTGG AAACCTTTGCACCAAAGAGAGTTATGACTATCTCAAGACTCTGGCTGGTGATGTTCATAT TGTGAGAGGAGACTTCGATGAGAATCTTAATTATCCAGAACAGAAAGTTGTGACCGTTGG GCAGTTCAAAATTGGTTTGATCCATGGACATCAAGTTATTCCATGGGGAGATATGGCCAG CTTAGCCCTATTGCAGAGGCAGTTTGATGTGGACATTCTTATTTCGGGACACACACACAA ATTTGAAGCATTTGAGCATGAAAATAAATTCTACATTAATCCAGGTTCCGCCACTGGAGC ATATAATGCCTTGGAAACAAACATTATTCCTTCATTTGTGTTGATGGATATCCAGGCTTC TACAGTTGTCACTTATGTGTATCAGCTAATTGGAGATGATGTGAAAGTAGAACGAATTGA ATACAAAAAATCTTAAAGCCAGGCCTGTCTTGATGATTTTTCTGTTGGGCTTTTCTTTTT TTCATTCCCCTGTTCAACTCAAGTAATTAAACATTTAAGAGCCACAAAATTGTATCACTT TTATAATATTTTGCAGTAAAATATAATATCGTCTTCTGTTAATACAGTGTTCTAAGCTTC TTGTAAACTATAAGATTATATTTAGTTTAAGTATATGATTTCTATGAAAAAATGCCCACC ACACAGTATGGTCACATGTTAAGAAAAATTTATCCTTGTAAATATCCTCATAGTTGATAT TTGGAACTTTATTACCAAAGTAGTGCATGAGGAGAAAGAATCTAGACTTTCTTGTATACA TTTTTCTCTTCTCCAGTAATAAACAGTTACCTTTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 261-498, gnl|bosTau2|chr17 (30234663-30234900) | |
| 261-498, gnl|canFam2|chr26 (11320924-11321169) | |
| 261-498, gnl|danRer3|chr21 (7207096-7207334) | |
| 261-498, gnl|dasNov1|scaffold_9406 (61528-61293) | |
| 261-498, gnl|echTel1|scaffold_315023 (77081-76836) | |
| 261-498, gnl|fr1|chrUn (221677627-221677868) | |
| 261-498, gnl|galGal2|chr15 (5894127-5894372) | |
| 261-498, gnl|hg17|chr12 (109393512-109393757) | |
| 261-498, gnl|Hg17|chr12 (109393758-109393521) | |
| 261-498, gnl|loxAfr1|scaffold_8228 (39600-39845) | |
| 261-498, gnl|mm7|chr5 (121596502-121596259) | |
| 261-498, gnl|Mm7|chr5 (121596256-121596493) | |
| 261-498, gnl|monDom2|scaffold_97 (869984-869739) | |
| 261-498, gnl|oryCun1|scaffold_86852 (14292-14537) | |
| 261-498, gnl|panTro1|chr10 (111970996-111971241) | |
| 261-498, gnl|rheMac2|chr11 (111424137-111424382) | |
| 261-498, gnl|rn3|chr12 (35268009-35268252) | |
| 261-498, gnl|tetNig1|chr10 (12459069-12459310) | |
| 261-498, gnl|xenTro1|scaffold_501 (501903-501662) | |
| 499-996, gnl|bosTau2|chr17 (30235142-30235641) | |
| 499-996, gnl|Hg17|chr12 (109392647-109392153) | |
| 499-996, gnl|Mm7|chr5 (121597027-121597505) | |
| 607-838, gnl|bosTau2|chr13 (26393904-26394127) | |
| 607-838, gnl|Hg17|chr12 (109392528-109392323) | |
| 607-838, gnl|Mm7|chr5 (121597135-121597348) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 261-498, gnl|bosTau2|chr17 (30234663-30234900) | |
| 261-498, gnl|canFam2|chr26 (11320924-11321169) | |
| 261-498, gnl|danRer3|chr21 (7207096-7207334) | |
| 261-498, gnl|dasNov1|scaffold_9406 (61528-61293) | |
| 261-498, gnl|echTel1|scaffold_315023 (77081-76836) | |
| 261-498, gnl|fr1|chrUn (221677627-221677868) | |
| 261-498, gnl|galGal2|chr15 (5894127-5894372) | |
| 261-498, gnl|hg17|chr12 (109393512-109393757) | |
| 261-498, gnl|Hg17|chr12 (109393758-109393521) | |
| 261-498, gnl|loxAfr1|scaffold_8228 (39600-39845) | |
| 261-498, gnl|mm7|chr5 (121596502-121596259) | |
| 261-498, gnl|Mm7|chr5 (121596256-121596493) | |
| 261-498, gnl|monDom2|scaffold_97 (869984-869739) | |
| 261-498, gnl|oryCun1|scaffold_86852 (14292-14537) | |
| 261-498, gnl|panTro1|chr10 (111970996-111971241) | |
| 261-498, gnl|rheMac2|chr11 (111424137-111424382) | |
| 261-498, gnl|rn3|chr12 (35268009-35268252) | |
| 261-498, gnl|tetNig1|chr10 (12459069-12459310) | |
| 261-498, gnl|xenTro1|scaffold_501 (501903-501662) | |
| 499-996, gnl|bosTau2|chr17 (30235142-30235641) | |
| 499-996, gnl|Hg17|chr12 (109392647-109392153) | |
| 499-996, gnl|Mm7|chr5 (121597027-121597505) | |
| 607-838, gnl|bosTau2|chr13 (26393904-26394127) | |
| 607-838, gnl|Hg17|chr12 (109392528-109392323) | |
| 607-838, gnl|Mm7|chr5 (121597135-121597348) |
| Expressed library(ies): 56 entry(ies) | More info |
| Expressed library(ies): 56 entry(ies) | Help | Less info |
| kid (1.03788) | |
| tes (0.831255) | |
| tra (0.738552) | |
| tbr (0.616713) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| gul (0.532765) | |
| thg (0.507164) | |
| mgp (0.461361) | |
| lun (0.451467) | |
| ski (0.440205) | |
| liv (0.438853) | |
| hea (0.408998) | |
| ret (0.3862) | |
| nlu (0.383362) | |
| sug (0.381874) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| spc (0.340097) | |
| nje (0.33184) | |
| mga (0.32041) | |
| sme (0.305437) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| eje (0.296501) | |
| ldo (0.291008) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| bla (0.248694) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nco (0.161734) | |
| fco (0.157208) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 56 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (1.03788) | |
| tes (0.831255) | |
| tra (0.738552) | |
| tbr (0.616713) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| gul (0.532765) | |
| thg (0.507164) | |
| mgp (0.461361) | |
| lun (0.451467) | |
| ski (0.440205) | |
| liv (0.438853) | |
| hea (0.408998) | |
| ret (0.3862) | |
| nlu (0.383362) | |
| sug (0.381874) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| spc (0.340097) | |
| nje (0.33184) | |
| mga (0.32041) | |
| sme (0.305437) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| eje (0.296501) | |
| ldo (0.291008) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| bla (0.248694) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nco (0.161734) | |
| fco (0.157208) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) |