Non-Coding RNA Search

Ss1.1-Lym2-sn59_C07.f1.5

Sequence:


               
               GTGACATGGTGATGTATGAGTGTTGAGTGATTGTGGCAAGAAAAACTGCAGCTTTTTTGG
TGTAATGCCAGACTTTGAAACCTCAGACCAGAACTGGCTGCATGTTACTTCAGAAGCTAT
AGGCTGGACTGTCCCTGAGGCAGTGGTGTGACATCCCACAGCCTTTTGGGCTCCAAGGCT
CCCAGCAAAACTGACTGCTCAGGATGATGGGGGGATGGCAGTTCCCCCTTTTAAATGATG
CTTCTTCATTCTTGTTTGTTTTTGGTAGTGATCCTTGGAAGACATCCCAAATTATGAATA
GGTCTGTCATTTAAAACTAGAAGAAAACAAAATACAACAAATATGTGGAGATAGATTTGC
TGTATTCATTGTTTGCTTTGAGTATTTTAATTGCCACCTTGGCCTACTTAATAGCTTATT
TTTCTACTTGTTGAGAAAGTAATATTAAGAGAATGATGAGGAAAGTGGAATGAGAGCCAT
AGTTGGTGTTACTGTTTCAGGAGATTGCACTGCACTGAGGATGCCCTTCCCGTCCTGAGG
CTGTTGCAGAGCCTTTGGCTGTCCCGTGCAGGACCTCGGAGCCCCGGTGGTGGTATAGGT
TAGAGATGGGAATTGTGGCCACACACATGAATGACCTGCTTAAGACATCACTCCTCCTGA
CCAGGACACCACCCTTGTTTTTATTCCTGACTCAAGTGTCTTAGAGAAGCTTAAACCATT
TAATTTTGAGCCCCAAGTGTGTGGAGCTCTGGAGAACCCAGAGTCCTGTGTTTCTGTTAT
TTCTTCTTTATCTATGTCAATTTAAAAACTTCAGTTATTCCAGTTTTCTGTTCTGCATGC
TTTAAAAAATGTGCTTTTACAAAAGCAGTTGAGCACCTTGAAAATCTTTGCCCCCACACT
CCATGTGGCCCCATTTTCCGTAAAATACACTCCTAGTAGCACAAATTCTATTTTTATTCT
GTGTAGCCAGTTCCATACATAGTCTTTTTGTGGAAAGACTGGTCAACTGACTCCATCTCA
AAGTCACATGTGAAGAGGTCTAGCTCCGAATGAGCCCACGTGCCAAATGCACTTTGCCGT
GATCACAGGTCTGTTTTCCCAACCAATTCTACTGCACTTGCTGACACCAGAGCATCAGTT
TCCAGCTGAAAGGAAGTGTATTTAGCTGTCATCTCTTTGGATGTTTGACATAGTGGAAAA
TTGCCAGATGTGATGTGTGACACCATTGGTTTTGATGGTTAAAGCTGTTGCGTTTGTGAT
TTTACATTTTATATAAAAAGAGTGGTTTTGTTAAGATGTTAATCATTAAAGCTATATGCT
TTACTTACAAAATACTAAACTCAATTTTTAATGTTGCATTGGGTATTAATTTTGAACTTC
GAGTTATTGGAACCACAGAATACTGAGTTAGTCACTGAAACACCCTTGAAGCAAATGTGT
TTCCCCTGTGTCTCCTGGCTGCCCTCTGACAAAAAGGAGTAAGCTGTGGCCTGAAACTTG
GGCACACATGTGTGCCCGCATCTCCAGTCCCTGTCCCCAGAGGGGCCAGCCTTGTTGGGT
ATCTAGAGTTGAATCTGAAAATTCACTGTCACTAGTGACTTGATCCTGCGAGGAAATGCA
CACTTGGTATAGATGGGCTGAGATACCTCATTTCCCTGGCCCCAACTGCCGTAGATGCCA
ATCTTTTGGTCGCCTTGTTTAGGTAACCCTAAATCAAGAAGGAACTTGTTCAGGTTTGAG
TCAGCATTTTACTTCAGTGTGTACTTTTTAAGAGTGTACCTGGAAAGAAGTTGGCAGTTG
ACGTTGCACACATGCCAGTCTGCTTGTGTTTAGCTCTGTTCTTTAATTCCTTGAGTTAAC
TTCTGGGTCTTAGATGTGAAGAGAAAGGAGAGACCAGTATGTTTCAGATCATCAAGAAGT
GAGCCAGACCAGGACGTGAGATCTGGATCATGGAAGAAAGACCTGCTGTTGAGATAGAAT
GACCCACGTTTTATTTTCTACATTAATTGTGATCCTGTATGATCTTTCTTTCTCCTATGC
GAGTTTATGTACACACCAGCATGGAACACAATTCCGTTGTTTTCCCCTAGAGGTGATCTT
TTTTCTGATTGCTTGCCTGTCTCTGGTATTCTATTGTGTCCTCAGAACCTGTTTTTCCCT
ATGTATGCAAACTGTATGTTTATAAGTGAAAATGTTAATACATTAAATGATCATTAACCT
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACATGGTGATGTATGAGTGTTGAGTGATTGTGGCAAGAAAAACTGCAGCTTTTTTGG
TGTAATGCCAGACTTTGAAACCTCAGACCAGAACTGGCTGCATGTTACTTCAGAAGCTAT
AGGCTGGACTGTCCCTGAGGCAGTGGTGTGACATCCCACAGCCTTTTGGGCTCCAAGGCT
CCCAGCAAAACTGACTGCTCAGGATGATGGGGGGATGGCAGTTCCCCCTTTTAAATGATG
CTTCTTCATTCTTGTTTGTTTTTGGTAGTGATCCTTGGAAGACATCCCAAATTATGAATA
GGTCTGTCATTTAAAACTAGAAGAAAACAAAATACAACAAATATGTGGAGATAGATTTGC
TGTATTCATTGTTTGCTTTGAGTATTTTAATTGCCACCTTGGCCTACTTAATAGCTTATT
TTTCTACTTGTTGAGAAAGTAATATTAAGAGAATGATGAGGAAAGTGGAATGAGAGCCAT
AGTTGGTGTTACTGTTTCAGGAGATTGCACTGCACTGAGGATGCCCTTCCCGTCCTGAGG
CTGTTGCAGAGCCTTTGGCTGTCCCGTGCAGGACCTCGGAGCCCCGGTGGTGGTATAGGT
TAGAGATGGGAATTGTGGCCACACACATGAATGACCTGCTTAAGACATCACTCCTCCTGA
CCAGGACACCACCCTTGTTTTTATTCCTGACTCAAGTGTCTTAGAGAAGCTTAAACCATT
TAATTTTGAGCCCCAAGTGTGTGGAGCTCTGGAGAACCCAGAGTCCTGTGTTTCTGTTAT
TTCTTCTTTATCTATGTCAATTTAAAAACTTCAGTTATTCCAGTTTTCTGTTCTGCATGC
TTTAAAAAATGTGCTTTTACAAAAGCAGTTGAGCACCTTGAAAATCTTTGCCCCCACACT
CCATGTGGCCCCATTTTCCGTAAAATACACTCCTAGTAGCACAAATTCTATTTTTATTCT
GTGTAGCCAGTTCCATACATAGTCTTTTTGTGGAAAGACTGGTCAACTGACTCCATCTCA
AAGTCACATGTGAAGAGGTCTAGCTCCGAATGAGCCCACGTGCCAAATGCACTTTGCCGT
GATCACAGGTCTGTTTTCCCAACCAATTCTACTGCACTTGCTGACACCAGAGCATCAGTT
TCCAGCTGAAAGGAAGTGTATTTAGCTGTCATCTCTTTGGATGTTTGACATAGTGGAAAA
TTGCCAGATGTGATGTGTGACACCATTGGTTTTGATGGTTAAAGCTGTTGCGTTTGTGAT
TTTACATTTTATATAAAAAGAGTGGTTTTGTTAAGATGTTAATCATTAAAGCTATATGCT
TTACTTACAAAATACTAAACTCAATTTTTAATGTTGCATTGGGTATTAATTTTGAACTTC
GAGTTATTGGAACCACAGAATACTGAGTTAGTCACTGAAACACCCTTGAAGCAAATGTGT
TTCCCCTGTGTCTCCTGGCTGCCCTCTGACAAAAAGGAGTAAGCTGTGGCCTGAAACTTG
GGCACACATGTGTGCCCGCATCTCCAGTCCCTGTCCCCAGAGGGGCCAGCCTTGTTGGGT
ATCTAGAGTTGAATCTGAAAATTCACTGTCACTAGTGACTTGATCCTGCGAGGAAATGCA
CACTTGGTATAGATGGGCTGAGATACCTCATTTCCCTGGCCCCAACTGCCGTAGATGCCA
ATCTTTTGGTCGCCTTGTTTAGGTAACCCTAAATCAAGAAGGAACTTGTTCAGGTTTGAG
TCAGCATTTTACTTCAGTGTGTACTTTTTAAGAGTGTACCTGGAAAGAAGTTGGCAGTTG
ACGTTGCACACATGCCAGTCTGCTTGTGTTTAGCTCTGTTCTTTAATTCCTTGAGTTAAC
TTCTGGGTCTTAGATGTGAAGAGAAAGGAGAGACCAGTATGTTTCAGATCATCAAGAAGT
GAGCCAGACCAGGACGTGAGATCTGGATCATGGAAGAAAGACCTGCTGTTGAGATAGAAT
GACCCACGTTTTATTTTCTACATTAATTGTGATCCTGTATGATCTTTCTTTCTCCTATGC
GAGTTTATGTACACACCAGCATGGAACACAATTCCGTTGTTTTCCCCTAGAGGTGATCTT
TTTTCTGATTGCTTGCCTGTCTCTGGTATTCTATTGTGTCCTCAGAACCTGTTTTTCCCT
ATGTATGCAAACTGTATGTTTATAAGTGAAAATGTTAATACATTAAATGATCATTAACCT
TAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-301, gnl|bosTau2|chr8 (7989129-7988827)
               

               
               1-301, gnl|Hg17|chr18 (55749230-55749920)
               

               
               1-301, gnl|Mm7|chr1 (35100607-35100955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-301, gnl|bosTau2|chr8 (7989129-7988827)
               

               
               1-301, gnl|Hg17|chr18 (55749230-55749920)
               

               
               1-301, gnl|Mm7|chr1 (35100607-35100955)

Expressed library(ies): 51 entry(ies)

More info

Expressed library(ies): 51 entry(ies)

Help | Less info


               
               gul (1.77588)
               

               
               spc (1.36039)
               

               
               lin (1.01922)
               

               
               cbe (0.956938)
               

               
               bfe (0.749288)
               

               
               fbs (0.701385)
               

               
               ret (0.643666)
               

               
               sug (0.636456)
               

               
               fco (0.628832)
               

               
               tra (0.61546)
               

               
               isp (0.601504)
               

               
               thg (0.507164)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               spl (0.429553)
               

               
               ste (0.405625)
               

               
               pla (0.401016)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.77588)
               

               
               spc (1.36039)
               

               
               lin (1.01922)
               

               
               cbe (0.956938)
               

               
               bfe (0.749288)
               

               
               fbs (0.701385)
               

               
               ret (0.643666)
               

               
               sug (0.636456)
               

               
               fco (0.628832)
               

               
               tra (0.61546)
               

               
               isp (0.601504)
               

               
               thg (0.507164)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               spl (0.429553)
               

               
               ste (0.405625)
               

               
               pla (0.401016)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-301, gnl\|bosTau2\|chr8 (7989129-7988827)
	1-301, gnl\|Hg17\|chr18 (55749230-55749920)
	1-301, gnl\|Mm7\|chr1 (35100607-35100955)

	gul (1.77588)
	spc (1.36039)
	lin (1.01922)
	cbe (0.956938)
	bfe (0.749288)
	fbs (0.701385)
	ret (0.643666)
	sug (0.636456)
	fco (0.628832)
	tra (0.61546)
	isp (0.601504)
	thg (0.507164)
	mga (0.480615)
	mgp (0.461361)
	ski (0.440205)
	spl (0.429553)
	ste (0.405625)
	pla (0.401016)
	bla (0.373042)
	sag (0.36543)
	sin (0.349895)
	sme (0.305437)
	fce (0.271592)
	ssp (0.271039)
	lyg (0.266205)
	med (0.232504)
	mas (0.210305)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	ldo (0.194005)
	cmu (0.186393)
	mgm (0.180343)
	ton (0.1755)
	rec (0.17307)
	eye (0.170503)
	tbr (0.154178)
	fat (0.147427)
	liv (0.146284)
	hyp (0.142837)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	kid (0.129735)
	ebs (0.118301)
	ecc (0.115035)
	cbl (0.114797)
	jej (0.0989218)
	eje (0.0988338)