Non-Coding RNA Search

Ss1.1-Lym2-sn61_D06.f.5

Sequence:


               
               AGTGAGCTGGCCTCAGTTCCTGTTATGCCCATAGCTTCGGTGTTGCCGCTGCCGGTGGAA
GAGAGTTCTCTGCCGTCGACCGTGTTGGCAAATGGAGGGAAGATCCCCTTCGTTATGCCA
GAACCGTTTTTAGATGATGGCGACATGGTCCTGGGAGATGAGATAGATGAGCTCCTTGAC
TCTGCGCCTGAAACTAATGAAAATGTTATGCCATCAGCCTTAGTCAGAGGCCCCCTGTCG
ACGGCCACTGTCACCCCAAACATCCCCTTCTCGGCGTCTCTCCTGGGCACCCTGCCCATT
GGTGCAAGATACGCGCCTGCACCCTCCTTCTCGGAGCTCTTCCCACCTCTGGCTTCATCC
TTGGAAGATTTCTGTTCTTCTCTAAAGTCGTTTTCAATGAGCGAATCCAAACGAGATCTG
TCCACCTCAACTTCTAGAGAGGGAACATCGCTTAACAGCAGTAATTCTTCCCTTTTACTT
ATGAATGGACCGAGCAGTTTGTTTGCTTCGGAGAGTTTCCTGGGCCTTTCAACTCCCGCC
AGGAATGAGTTTGGAAACATTTTCACAAGTGCAGTAACTAAGCCACCTTCTTCAGTGACC
CCAAGACATCCCCTCGAAGGAACCCATGAACTGAGACAAGCTTGCCAGATCTGTTTTGTA
AAATCAGGCCCTAAGTTAATGGATTTCACTTACCTAGCTAATATAGATCATAAATGTAAG
AAAGATATTTTAATTGGTAGGATAAAGAATGTTGAAGATAAATCATGGAAAAAAATACGT
CCAAGACCAACAAAAACAAATTATGAAGGACCTTATTATATATGTAAAGATGTTGCTGCC
GAGGAGGAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAGCTGGCCTCAGTTCCTGTTATGCCCATAGCTTCGGTGTTGCCGCTGCCGGTGGAA
GAGAGTTCTCTGCCGTCGACCGTGTTGGCAAATGGAGGGAAGATCCCCTTCGTTATGCCA
GAACCGTTTTTAGATGATGGCGACATGGTCCTGGGAGATGAGATAGATGAGCTCCTTGAC
TCTGCGCCTGAAACTAATGAAAATGTTATGCCATCAGCCTTAGTCAGAGGCCCCCTGTCG
ACGGCCACTGTCACCCCAAACATCCCCTTCTCGGCGTCTCTCCTGGGCACCCTGCCCATT
GGTGCAAGATACGCGCCTGCACCCTCCTTCTCGGAGCTCTTCCCACCTCTGGCTTCATCC
TTGGAAGATTTCTGTTCTTCTCTAAAGTCGTTTTCAATGAGCGAATCCAAACGAGATCTG
TCCACCTCAACTTCTAGAGAGGGAACATCGCTTAACAGCAGTAATTCTTCCCTTTTACTT
ATGAATGGACCGAGCAGTTTGTTTGCTTCGGAGAGTTTCCTGGGCCTTTCAACTCCCGCC
AGGAATGAGTTTGGAAACATTTTCACAAGTGCAGTAACTAAGCCACCTTCTTCAGTGACC
CCAAGACATCCCCTCGAAGGAACCCATGAACTGAGACAAGCTTGCCAGATCTGTTTTGTA
AAATCAGGCCCTAAGTTAATGGATTTCACTTACCTAGCTAATATAGATCATAAATGTAAG
AAAGATATTTTAATTGGTAGGATAAAGAATGTTGAAGATAAATCATGGAAAAAAATACGT
CCAAGACCAACAAAAACAAATTATGAAGGACCTTATTATATATGTAAAGATGTTGCTGCC
GAGGAGGAATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879277|ref|XP_604708.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879277|ref|XP_604708.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               43-162, + strand, RNAz p=0.93284
               

               
               95-210, - strand, RNAz p=0.880648

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-162, + strand, RNAz p=0.93284
               

               
               95-210, - strand, RNAz p=0.880648

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC046363, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC046363, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               3-210, gnl|bosTau2|chr25 (9777453-9777246)
               

               
               3-210, gnl|canFam2|chr6 (34089522-34089318)
               

               
               3-210, gnl|echTel1|scaffold_318450 (7183-7010)
               

               
               3-210, gnl|galGal2|chr14 (3077600-3077395)
               

               
               3-210, gnl|hg17|chr16 (11775556-11775762)
               

               
               3-210, gnl|Hg17|chr16 (11775800-11775593)
               

               
               3-210, gnl|loxAfr1|scaffold_15501 (68917-69104)
               

               
               3-210, gnl|mm7|chr16 (10835187-10835388)
               

               
               3-210, gnl|Mm7|chr16 (10835426-10835222)
               

               
               3-210, gnl|monDom2|scaffold_17 (32506167-32505954)
               

               
               3-210, gnl|oryCun1|scaffold_199732 (54040-54244)
               

               
               3-210, gnl|panTro1|chr18 (12106278-12106484)
               

               
               3-210, gnl|rheMac2|chr20 (11847067-11847273)
               

               
               3-210, gnl|rn3|chr10 (4381384-4381193)
               

               
               3-210, gnl|xenTro1|scaffold_859 (63021-62832)
               


               
               664-837, gnl|bosTau2|chr25 (9772655-9772481)
               

               
               664-837, gnl|Hg17|chr16 (11768939-11768765)
               

               
               664-837, gnl|Mm7|chr16 (10829962-10829787)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-210, gnl|bosTau2|chr25 (9777453-9777246)
               

               
               3-210, gnl|canFam2|chr6 (34089522-34089318)
               

               
               3-210, gnl|echTel1|scaffold_318450 (7183-7010)
               

               
               3-210, gnl|galGal2|chr14 (3077600-3077395)
               

               
               3-210, gnl|hg17|chr16 (11775556-11775762)
               

               
               3-210, gnl|Hg17|chr16 (11775800-11775593)
               

               
               3-210, gnl|loxAfr1|scaffold_15501 (68917-69104)
               

               
               3-210, gnl|mm7|chr16 (10835187-10835388)
               

               
               3-210, gnl|Mm7|chr16 (10835426-10835222)
               

               
               3-210, gnl|monDom2|scaffold_17 (32506167-32505954)
               

               
               3-210, gnl|oryCun1|scaffold_199732 (54040-54244)
               

               
               3-210, gnl|panTro1|chr18 (12106278-12106484)
               

               
               3-210, gnl|rheMac2|chr20 (11847067-11847273)
               

               
               3-210, gnl|rn3|chr10 (4381384-4381193)
               

               
               3-210, gnl|xenTro1|scaffold_859 (63021-62832)
               


               
               664-837, gnl|bosTau2|chr25 (9772655-9772481)
               

               
               664-837, gnl|Hg17|chr16 (11768939-11768765)
               

               
               664-837, gnl|Mm7|chr16 (10829962-10829787)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	43-162, + strand, RNAz p=0.93284
	95-210, - strand, RNAz p=0.880648

	3-210, gnl\|bosTau2\|chr25 (9777453-9777246)
	3-210, gnl\|canFam2\|chr6 (34089522-34089318)
	3-210, gnl\|echTel1\|scaffold_318450 (7183-7010)
	3-210, gnl\|galGal2\|chr14 (3077600-3077395)
	3-210, gnl\|hg17\|chr16 (11775556-11775762)
	3-210, gnl\|Hg17\|chr16 (11775800-11775593)
	3-210, gnl\|loxAfr1\|scaffold_15501 (68917-69104)
	3-210, gnl\|mm7\|chr16 (10835187-10835388)
	3-210, gnl\|Mm7\|chr16 (10835426-10835222)
	3-210, gnl\|monDom2\|scaffold_17 (32506167-32505954)
	3-210, gnl\|oryCun1\|scaffold_199732 (54040-54244)
	3-210, gnl\|panTro1\|chr18 (12106278-12106484)
	3-210, gnl\|rheMac2\|chr20 (11847067-11847273)
	3-210, gnl\|rn3\|chr10 (4381384-4381193)
	3-210, gnl\|xenTro1\|scaffold_859 (63021-62832)

	664-837, gnl\|bosTau2\|chr25 (9772655-9772481)
	664-837, gnl\|Hg17\|chr16 (11768939-11768765)
	664-837, gnl\|Mm7\|chr16 (10829962-10829787)