Ss1.1-Lym2-sn61_E11.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCGGCTCTGGACAGCGGCTGGGGAAGACAGCTCCAGAATGGGAATGTGGCTCTTGGG TTTGGTGGTCTGTTTGGTCTTTGGACCCCTGCATTCTGAGGCATCCAGAGGAAAGCCGGC ACCTGTGGATCCTGAAATAAATATGAATGTGAGTGAAATTATCTCTCACTGGGGATATCC TAGTGAGGAGCACTTTGTCGTGACAGCAGATGGATATATTCTGTGCCTTAACCGAATTCC TCATGGGAGGAAGAACCACTCTGACAAAGGTCCCAAACCAGTTGTGTTCCTGCAGCATGG CTTGCTGGCAGATTCCAGTAACTGGGTCGTAAACCTGCCCAAGAACAGCCTGGGCTTCAT CCTGGCAGATGCTGGTTTTGACGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCG GAAACACAAGACTCTTTCAATTTCTCAGGAAGAATACTGGGCCTTCAGCTACGATGAGAT GGCAAATTATGACCTACCAGCTTCAATTAACTTCATTCTGAATAAAACTGGCCAAGAACA AGTGTATTATGTGGGTCATTCTCAAGGTACCACAATAGGTTTTATAGCATTTTCACGGAT CCCCGAGCTGGCCAAAAAGGTTAAAATGTTTTTTGCCTTGGCTCCTGTGGTTTCAGTTCA GTTCGCTACTAGCCCTCTAGTTAAATTAGGACAAATTCCAGATCATCTCATCAAGGACTT ATTTGGGGTCAAAGAATTTCTTCCCCAGAGTGCATTTTTGAAGTGGCTGAGTACACATGT TTGCGCTCATGTCATCCTGAAGGAGCTCTGTGGAAACATCGTTTTTGTTCTGTGTGGATT TAATGAGAGAAATTTAAATATGTCTAGAGTGGCTGTGTATACAGCACACTCTCCTGCTGG AACTTCTGTGCAAGACATGTTACACTGGAGCCAGGTTGTTAAATTTAAAAAGTTTCAAGC CTTTGACTGGGGAAGCAGTGCCAAGAATTACTTTCATTACAACCAGAGTCACCCTCCCCT TTACAACGTGAAAGACATGCTCGTTCGGACTGCTATCTGGAGTGGGGGACGGGACTGGCT CGCGGACGTCCAAGACGTCAGTGTCTTACTGACCCAGATCCCCAACCTGGTGTACCACAA GCACATCCATAAGTGGGAGCATCTTGACTTCATCTGGGGCTTGGATGCCCCACAGCAACT CTATGATGAAATGATAAATCTAATGAGGAAATATCAGTGAGAGCCAGGCTGGAGACGTTC ACTGTCAGGTTGTTTGTCAAAACTTGTCTGCTTAATGTCTCTAAAATACTTATGTTTCTT TCTCAGGCCTTTTGTATTTTTAGATCCAAAAAATGATACCTTTGAAGATGCCCCGTTCTC TCCAGTTAGAACTAGAAATGCTTTTGAGTCGTGGCCAAATATGAAGCCGATGCTTCAACC AGTCTTTCAGAAATGTCACTGACTTGTGAAAAGTCGTGACTACTCTGTTTATTCTTATAA TTTAGACCATACAGTATTGCTTTTAACCACTGACACAGGACACATTGGCACGTGTCGGGA TTTTTAAGCTACTGTCATTGATGGATAATCTGACACTGACTTGAAGGGTACTCATTGTCT AAGTACCCAGTTCTTATCCTTTTGCTTTAAAGGGCTCTTGACTGAACAGACTTGTATTTA GGGGTCCAAAGGAAACCTTCGCATGTTCTCATGCCGTAGGTAGAGTCCAATCCAGTGACA CTCCAGCCGTGCCAGTTAGAATGACCCCTCTGATGAATCTTATCAAACCTCACTGGGAGA GCTACTATTTCACAAATGTTTAAATTGCTCAGACCAAGCGAAGTAATTTGTTGGAGTTTT CAAAAATAAATTACATTCATCAATGACAACAAGAACAACCACATTTTAAATAACTTGAAG ATGGATGCATTCAGCCCTCTGTATTCCTGAACTCTTAATGGGGTGGCAGACCTTGAATAC ACTTGTTTGAGAAGAAAAGTCCTGTGGAGAGATGATACCACTATTTTTCCTGAAATTAAT GTACTCTCTACACCCCCTCCCCTTCCTGCTTCGGCTCAGAGGCCCTTTGTGAAGCTGAGA CCACTACGCCACTGAGGAGTAGCATCCTAGTTCATTTTCACACAAAAGAAATGCTGATGA AAGCTCAGGGATTCATTTTGGGGTTTTTTTTCTCATGTTTGTGTCCAAATTTTAATACTT CTGATTTGCATCTCTGTGTCAGGAAGCCCATGTTTGCCTGCTTTTCTTGCAGCCCTGTTT CCTCATAGTGCTGTCAGAGCGACAGTGACAGTTGCTACGTTTTTTGTTGTTGTCGTTGTT GTTTTTGATAGAGTTGCTTTGCAGTGATGAACAATACTTGGTTAATTTGTGCAGACAGTG TAATCTTGTGCAGACCTTTTAACATTTGAAAGGTCTCATTTAAACTTTTCAATAAAGTTC AGTCTCCTAGAGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCGGCTCTGGACAGCGGCTGGGGAAGACAGCTCCAGAATGGGAATGTGGCTCTTGGG TTTGGTGGTCTGTTTGGTCTTTGGACCCCTGCATTCTGAGGCATCCAGAGGAAAGCCGGC ACCTGTGGATCCTGAAATAAATATGAATGTGAGTGAAATTATCTCTCACTGGGGATATCC TAGTGAGGAGCACTTTGTCGTGACAGCAGATGGATATATTCTGTGCCTTAACCGAATTCC TCATGGGAGGAAGAACCACTCTGACAAAGGTCCCAAACCAGTTGTGTTCCTGCAGCATGG CTTGCTGGCAGATTCCAGTAACTGGGTCGTAAACCTGCCCAAGAACAGCCTGGGCTTCAT CCTGGCAGATGCTGGTTTTGACGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCG GAAACACAAGACTCTTTCAATTTCTCAGGAAGAATACTGGGCCTTCAGCTACGATGAGAT GGCAAATTATGACCTACCAGCTTCAATTAACTTCATTCTGAATAAAACTGGCCAAGAACA AGTGTATTATGTGGGTCATTCTCAAGGTACCACAATAGGTTTTATAGCATTTTCACGGAT CCCCGAGCTGGCCAAAAAGGTTAAAATGTTTTTTGCCTTGGCTCCTGTGGTTTCAGTTCA GTTCGCTACTAGCCCTCTAGTTAAATTAGGACAAATTCCAGATCATCTCATCAAGGACTT ATTTGGGGTCAAAGAATTTCTTCCCCAGAGTGCATTTTTGAAGTGGCTGAGTACACATGT TTGCGCTCATGTCATCCTGAAGGAGCTCTGTGGAAACATCGTTTTTGTTCTGTGTGGATT TAATGAGAGAAATTTAAATATGTCTAGAGTGGCTGTGTATACAGCACACTCTCCTGCTGG AACTTCTGTGCAAGACATGTTACACTGGAGCCAGGTTGTTAAATTTAAAAAGTTTCAAGC CTTTGACTGGGGAAGCAGTGCCAAGAATTACTTTCATTACAACCAGAGTCACCCTCCCCT TTACAACGTGAAAGACATGCTCGTTCGGACTGCTATCTGGAGTGGGGGACGGGACTGGCT CGCGGACGTCCAAGACGTCAGTGTCTTACTGACCCAGATCCCCAACCTGGTGTACCACAA GCACATCCATAAGTGGGAGCATCTTGACTTCATCTGGGGCTTGGATGCCCCACAGCAACT CTATGATGAAATGATAAATCTAATGAGGAAATATCAGTGAGAGCCAGGCTGGAGACGTTC ACTGTCAGGTTGTTTGTCAAAACTTGTCTGCTTAATGTCTCTAAAATACTTATGTTTCTT TCTCAGGCCTTTTGTATTTTTAGATCCAAAAAATGATACCTTTGAAGATGCCCCGTTCTC TCCAGTTAGAACTAGAAATGCTTTTGAGTCGTGGCCAAATATGAAGCCGATGCTTCAACC AGTCTTTCAGAAATGTCACTGACTTGTGAAAAGTCGTGACTACTCTGTTTATTCTTATAA TTTAGACCATACAGTATTGCTTTTAACCACTGACACAGGACACATTGGCACGTGTCGGGA TTTTTAAGCTACTGTCATTGATGGATAATCTGACACTGACTTGAAGGGTACTCATTGTCT AAGTACCCAGTTCTTATCCTTTTGCTTTAAAGGGCTCTTGACTGAACAGACTTGTATTTA GGGGTCCAAAGGAAACCTTCGCATGTTCTCATGCCGTAGGTAGAGTCCAATCCAGTGACA CTCCAGCCGTGCCAGTTAGAATGACCCCTCTGATGAATCTTATCAAACCTCACTGGGAGA GCTACTATTTCACAAATGTTTAAATTGCTCAGACCAAGCGAAGTAATTTGTTGGAGTTTT CAAAAATAAATTACATTCATCAATGACAACAAGAACAACCACATTTTAAATAACTTGAAG ATGGATGCATTCAGCCCTCTGTATTCCTGAACTCTTAATGGGGTGGCAGACCTTGAATAC ACTTGTTTGAGAAGAAAAGTCCTGTGGAGAGATGATACCACTATTTTTCCTGAAATTAAT GTACTCTCTACACCCCCTCCCCTTCCTGCTTCGGCTCAGAGGCCCTTTGTGAAGCTGAGA CCACTACGCCACTGAGGAGTAGCATCCTAGTTCATTTTCACACAAAAGAAATGCTGATGA AAGCTCAGGGATTCATTTTGGGGTTTTTTTTCTCATGTTTGTGTCCAAATTTTAATACTT CTGATTTGCATCTCTGTGTCAGGAAGCCCATGTTTGCCTGCTTTTCTTGCAGCCCTGTTT CCTCATAGTGCTGTCAGAGCGACAGTGACAGTTGCTACGTTTTTTGTTGTTGTCGTTGTT GTTTTTGATAGAGTTGCTTTGCAGTGATGAACAATACTTGGTTAATTTGTGCAGACAGTG TAATCTTGTGCAGACCTTTTAACATTTGAAAGGTCTCATTTAAACTTTTCAATAAAGTTC AGTCTCCTAGAGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 268-1275, - strand, RNAz p=0.999902 | |
| 268-386, - strand, RNAz p=0.78737 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 268-1275, - strand, RNAz p=0.999902 | |
| 268-386, - strand, RNAz p=0.78737 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 37-151, gnl|bosTau2|chr26 (7386818-7386932) | |
| 37-151, gnl|canFam2|chr26 (41981412-41981763) | |
| 37-151, gnl|dasNov1|scaffold_772 (11199-10872) | |
| 37-151, gnl|echTel1|scaffold_325375 (95211-95573) | |
| 37-151, gnl|hg17|chr10 (90997223-90997562) | |
| 37-151, gnl|Hg17|chr10 (90997389-90997275) | |
| 37-151, gnl|loxAfr1|scaffold_4018 (5171-4842) | |
| 37-151, gnl|mm7|chr19 (34225978-34226313) | |
| 37-151, gnl|Mm7|chr19 (34226156-34226042) | |
| 37-151, gnl|oryCun1|scaffold_179108 (13026-13378) | |
| 37-151, gnl|panTro1|chr8 (92692722-92693066) | |
| 37-151, gnl|rheMac2|chr9 (88839278-88839629) | |
| 37-151, gnl|rn3|chr1 (238661468-238661798) | |
| 268-471, gnl|bosTau2|chr26 (7411124-7411327) | |
| 268-471, gnl|canFam2|chr26 (41969496-41969644) | |
| 268-471, gnl|danRer3|chr12 (10327372-10327520) | |
| 268-471, gnl|dasNov1|scaffold_3699 (63910-64058) | |
| 268-471, gnl|echTel1|scaffold_202032 (4632-4780) | |
| 268-471, gnl|galGal2|chr6 (18502568-18502716) | |
| 268-471, gnl|hg17|chr10 (90977934-90978082) | |
| 268-471, gnl|Hg17|chr10 (90978137-90977934) | |
| 268-471, gnl|loxAfr1|scaffold_4018 (22430-22282) | |
| 268-471, gnl|mm7|chr19 (34212124-34212272) | |
| 268-471, gnl|Mm7|chr19 (34212327-34212124) | |
| 268-471, gnl|monDom2|scaffold_62 (10155780-10155632) | |
| 268-471, gnl|oryCun1|scaffold_152664 (2886-3037) | |
| 268-471, gnl|panTro1|chr8 (92672968-92673116) | |
| 268-471, gnl|rheMac2|chr9 (88819042-88819190) | |
| 268-471, gnl|rn3|chr1 (238646781-238646929) | |
| 268-471, gnl|tetNig1|chrUn_random (47486312-47486460) | |
| 268-471, gnl|xenTro1|scaffold_94 (1874133-1873985) | |
| 714-862, gnl|bosTau2|chr26 (7417353-7417501) | |
| 714-862, gnl|canFam2|chr26 (41963219-41963391) | |
| 714-862, gnl|danRer3|chr12 (10323551-10323724) | |
| 714-862, gnl|dasNov1|scaffold_3699 (56415-56578) | |
| 714-862, gnl|echTel1|scaffold_325375 (70923-71094) | |
| 714-862, gnl|galGal2|chr6 (18499819-18499988) | |
| 714-862, gnl|hg17|chr10 (90973405-90973577) | |
| 714-862, gnl|Hg17|chr10 (90973569-90973421) | |
| 714-862, gnl|loxAfr1|scaffold_4018 (29648-29476) | |
| 714-862, gnl|mm7|chr19 (34202796-34202962) | |
| 714-862, gnl|Mm7|chr19 (34202955-34202807) | |
| 714-862, gnl|monDom2|scaffold_62 (10161491-10161331) | |
| 714-862, gnl|oryCun1|scaffold_185533 (11917-12088) | |
| 714-862, gnl|panTro1|chr8 (92668440-92668612) | |
| 714-862, gnl|rheMac2|chr9 (88814231-88814403) | |
| 714-862, gnl|rn3|chr1 (238637846-238638012) | |
| 714-862, gnl|xenTro1|scaffold_94 (1876880-1876714) | |
| 1004-1821, gnl|bosTau2|chr26 (7428165-7428995) | |
| 1004-1821, gnl|Hg17|chr10 (90964801-90963952) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-151, gnl|bosTau2|chr26 (7386818-7386932) | |
| 37-151, gnl|canFam2|chr26 (41981412-41981763) | |
| 37-151, gnl|dasNov1|scaffold_772 (11199-10872) | |
| 37-151, gnl|echTel1|scaffold_325375 (95211-95573) | |
| 37-151, gnl|hg17|chr10 (90997223-90997562) | |
| 37-151, gnl|Hg17|chr10 (90997389-90997275) | |
| 37-151, gnl|loxAfr1|scaffold_4018 (5171-4842) | |
| 37-151, gnl|mm7|chr19 (34225978-34226313) | |
| 37-151, gnl|Mm7|chr19 (34226156-34226042) | |
| 37-151, gnl|oryCun1|scaffold_179108 (13026-13378) | |
| 37-151, gnl|panTro1|chr8 (92692722-92693066) | |
| 37-151, gnl|rheMac2|chr9 (88839278-88839629) | |
| 37-151, gnl|rn3|chr1 (238661468-238661798) | |
| 268-471, gnl|bosTau2|chr26 (7411124-7411327) | |
| 268-471, gnl|canFam2|chr26 (41969496-41969644) | |
| 268-471, gnl|danRer3|chr12 (10327372-10327520) | |
| 268-471, gnl|dasNov1|scaffold_3699 (63910-64058) | |
| 268-471, gnl|echTel1|scaffold_202032 (4632-4780) | |
| 268-471, gnl|galGal2|chr6 (18502568-18502716) | |
| 268-471, gnl|hg17|chr10 (90977934-90978082) | |
| 268-471, gnl|Hg17|chr10 (90978137-90977934) | |
| 268-471, gnl|loxAfr1|scaffold_4018 (22430-22282) | |
| 268-471, gnl|mm7|chr19 (34212124-34212272) | |
| 268-471, gnl|Mm7|chr19 (34212327-34212124) | |
| 268-471, gnl|monDom2|scaffold_62 (10155780-10155632) | |
| 268-471, gnl|oryCun1|scaffold_152664 (2886-3037) | |
| 268-471, gnl|panTro1|chr8 (92672968-92673116) | |
| 268-471, gnl|rheMac2|chr9 (88819042-88819190) | |
| 268-471, gnl|rn3|chr1 (238646781-238646929) | |
| 268-471, gnl|tetNig1|chrUn_random (47486312-47486460) | |
| 268-471, gnl|xenTro1|scaffold_94 (1874133-1873985) | |
| 714-862, gnl|bosTau2|chr26 (7417353-7417501) | |
| 714-862, gnl|canFam2|chr26 (41963219-41963391) | |
| 714-862, gnl|danRer3|chr12 (10323551-10323724) | |
| 714-862, gnl|dasNov1|scaffold_3699 (56415-56578) | |
| 714-862, gnl|echTel1|scaffold_325375 (70923-71094) | |
| 714-862, gnl|galGal2|chr6 (18499819-18499988) | |
| 714-862, gnl|hg17|chr10 (90973405-90973577) | |
| 714-862, gnl|Hg17|chr10 (90973569-90973421) | |
| 714-862, gnl|loxAfr1|scaffold_4018 (29648-29476) | |
| 714-862, gnl|mm7|chr19 (34202796-34202962) | |
| 714-862, gnl|Mm7|chr19 (34202955-34202807) | |
| 714-862, gnl|monDom2|scaffold_62 (10161491-10161331) | |
| 714-862, gnl|oryCun1|scaffold_185533 (11917-12088) | |
| 714-862, gnl|panTro1|chr8 (92668440-92668612) | |
| 714-862, gnl|rheMac2|chr9 (88814231-88814403) | |
| 714-862, gnl|rn3|chr1 (238637846-238638012) | |
| 714-862, gnl|xenTro1|scaffold_94 (1876880-1876714) | |
| 1004-1821, gnl|bosTau2|chr26 (7428165-7428995) | |
| 1004-1821, gnl|Hg17|chr10 (90964801-90963952) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| spl (1.00229) | |
| sug (0.891039) | |
| cov (0.660764) | |
| kid (0.648677) | |
| cly (0.603209) | |
| lun (0.451467) | |
| fat (0.442282) | |
| cty (0.41632) | |
| clu (0.358938) | |
| fty (0.351679) | |
| spc (0.340097) | |
| jej (0.296765) | |
| cte (0.29274) | |
| csk (0.281492) | |
| ret (0.257467) | |
| bla (0.248694) | |
| tra (0.246184) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| nje (0.16592) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| thg (0.126791) | |
| nbm (0.0993246) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (1.00229) | |
| sug (0.891039) | |
| cov (0.660764) | |
| kid (0.648677) | |
| cly (0.603209) | |
| lun (0.451467) | |
| fat (0.442282) | |
| cty (0.41632) | |
| clu (0.358938) | |
| fty (0.351679) | |
| spc (0.340097) | |
| jej (0.296765) | |
| cte (0.29274) | |
| csk (0.281492) | |
| ret (0.257467) | |
| bla (0.248694) | |
| tra (0.246184) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| nje (0.16592) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| thg (0.126791) | |
| nbm (0.0993246) |