Ss1.1-Lym2-sn61_H12.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTTGAAAATAGCCCTACTTCTGCTCATGCCTTCTGGGGAGGATCTGTTGTTTCATCTC AGTCAACACCAGAATCTATGCTATCAGGAAAATCTTCATATTTGCCAAATTCAGATCCTT TGCATCAGTCTGATACTTCCAAAGCTCCAGGTTTTAGACCACCATTACAGAGACCTGCTC CAAGTCCCTCAGGTATTGTCAATATGGACTCGCCATATGGTTCTGTAACACCTTCTTCAA CACATTTGGGAAACTTTGCTTCAAACCTTTCAGGAAGTCAAATGTATGGACCTGGGGCAC CCCTTGGAGGAGCACCCACAGCTGCTAACTTTAACAGACAACATTTCTCCCCACTTAGTT TGTTGACTCCATGTTCATCAGCATCAAATGATTCTCCTGCACAGTCAGTATCCTCTGGAG TTCGTGCACCTTCTCCTGCCCCATCATCAGTACCTTTAGGGTCAGAAAAGCCCAGCAACG TCTCTCAGGATAGAAAAGTTCCAGTCCCTATTGGGACGGAACGTTCTGCACGTATCAGGC AAACTGGAACTTCAGCTCCATCTGTTATTGGGAGTAATTTGTCCACATCAGTCGGGCACA GTGGCATCTGGTCCTTTGAAGGGATTGGTGGCAATCAAGACAAAGTAGACTGGTGTAATC CTGGGATGGGAAACCCTATGATTCACAGGCCAATGTCTGATCCAGGAGTATTTTCACAGC ATCAAGCAATGGAGCGAGAGAGTACAGGAATTGTAACTCCTTCTGGTACATTCCATCAGC ATGTTCCTGCAGGATACATGGACTTTCCTAAAGTTGGGGGTATGCCTTTTTCTGTGTATG GGAATGCAATGATTCCTCCAGTAGCGCCTATTCCTGATGGTGCTGGAGGACCCATATTTA ATGGCCCTCATGCTGCGGACCCCTCTTGGAACTCCCTAATAAAGATGGTTTCAAGCTCCA CTGAAAATAATGGCCCTCAAACGGTGTGGACTGGACCCTGGGCACCTCACATGAACAGTG TGCACATGAACCAGCTTGGCTGATGAGGACCAGCTGGTTAGCCTGCGGACCTTTTCATTC AGAGGAAATCACAAGTGGCCGAAAAAAATTTATGCCCCCAAATCATTCTACTGATGTGCT TGACTGAAGTGTGTAGGCTTTTTGCAGAAGAACTTACTAACTGACCTATTTTCTGTGAAC ATTTGTGACTGCCCATTCCCCATCATCATCCGTTTTACCTTAGTTAGCATTTTTCTTATC ATTTTTCTTTTTTTCTTTCCCTCTTCCCCTTTGGACATAACTTTCTGTTGAAGCTGTTCT TTGGCTGGTTGGTTTTAGTACTGTAAACTGCTTCTGAGCAAACACGGAAATTTAGCAAAA TTATGTAAACTTGATCCTGAAGTTTTAGAATGGCAAATAAATGTACAATTGTTTACATAA CAGAAAAGGCTAAGCAGAAAGTAAATTTCAATATGTCAGTATAGAGGCTCTACTTTATGT AGACTTAAATTAATGTGAGATATGTACCTTCATATTCAGAAATCTGGATGTTTCCTTCAT ACATTAAACTATTAATAAGCATAAAAAAAAAAAAAATGTACTTTAAGTATAAAGTAAAAC AATGGGCATTGTCAGAGAATGTTCCCGACGTTGGCCTTTATAATACCCAGGCTGCTCTGT TTTGAGTTTGTTTGCAGCAAGGCACATAGAGAATAAGAAATTTATCACCTTTTCATGTCT CTTTATTACCTTGTCATACTTTTAAAACTAATGCACACTTCTCTCTTTATTCACTCTTTT TTCTTTCCTCACCCTTACCACTAATATCAGTAAAACTTTCTCGCTGATCATAAAATAATT CTGTAAAGACTTTTATTCTAATGGCTGCTAAAGAGAGTTAGAGAACCTTCACTATCACCT GGGGTTTCTTCTAACCATAAAACATTCAGTCTTTCTGAGAATTTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTTGAAAATAGCCCTACTTCTGCTCATGCCTTCTGGGGAGGATCTGTTGTTTCATCTC AGTCAACACCAGAATCTATGCTATCAGGAAAATCTTCATATTTGCCAAATTCAGATCCTT TGCATCAGTCTGATACTTCCAAAGCTCCAGGTTTTAGACCACCATTACAGAGACCTGCTC CAAGTCCCTCAGGTATTGTCAATATGGACTCGCCATATGGTTCTGTAACACCTTCTTCAA CACATTTGGGAAACTTTGCTTCAAACCTTTCAGGAAGTCAAATGTATGGACCTGGGGCAC CCCTTGGAGGAGCACCCACAGCTGCTAACTTTAACAGACAACATTTCTCCCCACTTAGTT TGTTGACTCCATGTTCATCAGCATCAAATGATTCTCCTGCACAGTCAGTATCCTCTGGAG TTCGTGCACCTTCTCCTGCCCCATCATCAGTACCTTTAGGGTCAGAAAAGCCCAGCAACG TCTCTCAGGATAGAAAAGTTCCAGTCCCTATTGGGACGGAACGTTCTGCACGTATCAGGC AAACTGGAACTTCAGCTCCATCTGTTATTGGGAGTAATTTGTCCACATCAGTCGGGCACA GTGGCATCTGGTCCTTTGAAGGGATTGGTGGCAATCAAGACAAAGTAGACTGGTGTAATC CTGGGATGGGAAACCCTATGATTCACAGGCCAATGTCTGATCCAGGAGTATTTTCACAGC ATCAAGCAATGGAGCGAGAGAGTACAGGAATTGTAACTCCTTCTGGTACATTCCATCAGC ATGTTCCTGCAGGATACATGGACTTTCCTAAAGTTGGGGGTATGCCTTTTTCTGTGTATG GGAATGCAATGATTCCTCCAGTAGCGCCTATTCCTGATGGTGCTGGAGGACCCATATTTA ATGGCCCTCATGCTGCGGACCCCTCTTGGAACTCCCTAATAAAGATGGTTTCAAGCTCCA CTGAAAATAATGGCCCTCAAACGGTGTGGACTGGACCCTGGGCACCTCACATGAACAGTG TGCACATGAACCAGCTTGGCTGATGAGGACCAGCTGGTTAGCCTGCGGACCTTTTCATTC AGAGGAAATCACAAGTGGCCGAAAAAAATTTATGCCCCCAAATCATTCTACTGATGTGCT TGACTGAAGTGTGTAGGCTTTTTGCAGAAGAACTTACTAACTGACCTATTTTCTGTGAAC ATTTGTGACTGCCCATTCCCCATCATCATCCGTTTTACCTTAGTTAGCATTTTTCTTATC ATTTTTCTTTTTTTCTTTCCCTCTTCCCCTTTGGACATAACTTTCTGTTGAAGCTGTTCT TTGGCTGGTTGGTTTTAGTACTGTAAACTGCTTCTGAGCAAACACGGAAATTTAGCAAAA TTATGTAAACTTGATCCTGAAGTTTTAGAATGGCAAATAAATGTACAATTGTTTACATAA CAGAAAAGGCTAAGCAGAAAGTAAATTTCAATATGTCAGTATAGAGGCTCTACTTTATGT AGACTTAAATTAATGTGAGATATGTACCTTCATATTCAGAAATCTGGATGTTTCCTTCAT ACATTAAACTATTAATAAGCATAAAAAAAAAAAAAATGTACTTTAAGTATAAAGTAAAAC AATGGGCATTGTCAGAGAATGTTCCCGACGTTGGCCTTTATAATACCCAGGCTGCTCTGT TTTGAGTTTGTTTGCAGCAAGGCACATAGAGAATAAGAAATTTATCACCTTTTCATGTCT CTTTATTACCTTGTCATACTTTTAAAACTAATGCACACTTCTCTCTTTATTCACTCTTTT TTCTTTCCTCACCCTTACCACTAATATCAGTAAAACTTTCTCGCTGATCATAAAATAATT CTGTAAAGACTTTTATTCTAATGGCTGCTAAAGAGAGTTAGAGAACCTTCACTATCACCT GGGGTTTCTTCTAACCATAAAACATTCAGTCTTTCTGAGAATTTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 271-390, - strand, RNAz p=0.90206 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 271-390, - strand, RNAz p=0.90206 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 191-390, gnl|bosTau2|chr18 (27072994-27072795) | |
| 191-390, gnl|canFam2|chr13 (64841004-64841245) | |
| 191-390, gnl|dasNov1|scaffold_165692 (593-344) | |
| 191-390, gnl|echTel1|scaffold_158737 (3134-3374) | |
| 191-390, gnl|galGal2|chr4 (51271932-51272179) | |
| 191-390, gnl|hg17|chr4 (74315997-74316247) | |
| 191-390, gnl|Hg17|chr4 (74316200-74316001) | |
| 191-390, gnl|loxAfr1|scaffold_53052 (6538-6303) | |
| 191-390, gnl|mm7|chr5 (90210050-90210314) | |
| 191-390, gnl|Mm7|chr5 (90210268-90210054) | |
| 191-390, gnl|monDom2|scaffold_32 (18252799-18253041) | |
| 191-390, gnl|oryCun1|scaffold_197471 (5123-4877) | |
| 191-390, gnl|panTro1|chr3 (59408510-59408259) | |
| 191-390, gnl|rheMac2|chr5 (56599634-56599384) | |
| 191-390, gnl|rn3|chr14 (19373711-19373433) | |
| 191-390, gnl|xenTro1|scaffold_716 (534008-534241) | |
| 638-824, gnl|bosTau2|chr6 (50060867-50060681) | |
| 638-824, gnl|Hg17|chr4 (74308287-74308103) | |
| 638-824, gnl|Mm7|chr5 (90203536-90203353) | |
| 983-1968, gnl|bosTau2|chr6 (50059192-50058200) | |
| 983-1968, gnl|Hg17|chr4 (74307043-74306059) | |
| 983-1968, gnl|Mm7|chr5 (90200457-90199481) | |
| 1337-1513, gnl|bosTau2|chr2 (47805739-47805911) | |
| 1337-1513, gnl|Hg17|chr4 (74306674-74306504) | |
| 1337-1513, gnl|Mm7|chr5 (90200088-90199918) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 191-390, gnl|bosTau2|chr18 (27072994-27072795) | |
| 191-390, gnl|canFam2|chr13 (64841004-64841245) | |
| 191-390, gnl|dasNov1|scaffold_165692 (593-344) | |
| 191-390, gnl|echTel1|scaffold_158737 (3134-3374) | |
| 191-390, gnl|galGal2|chr4 (51271932-51272179) | |
| 191-390, gnl|hg17|chr4 (74315997-74316247) | |
| 191-390, gnl|Hg17|chr4 (74316200-74316001) | |
| 191-390, gnl|loxAfr1|scaffold_53052 (6538-6303) | |
| 191-390, gnl|mm7|chr5 (90210050-90210314) | |
| 191-390, gnl|Mm7|chr5 (90210268-90210054) | |
| 191-390, gnl|monDom2|scaffold_32 (18252799-18253041) | |
| 191-390, gnl|oryCun1|scaffold_197471 (5123-4877) | |
| 191-390, gnl|panTro1|chr3 (59408510-59408259) | |
| 191-390, gnl|rheMac2|chr5 (56599634-56599384) | |
| 191-390, gnl|rn3|chr14 (19373711-19373433) | |
| 191-390, gnl|xenTro1|scaffold_716 (534008-534241) | |
| 638-824, gnl|bosTau2|chr6 (50060867-50060681) | |
| 638-824, gnl|Hg17|chr4 (74308287-74308103) | |
| 638-824, gnl|Mm7|chr5 (90203536-90203353) | |
| 983-1968, gnl|bosTau2|chr6 (50059192-50058200) | |
| 983-1968, gnl|Hg17|chr4 (74307043-74306059) | |
| 983-1968, gnl|Mm7|chr5 (90200457-90199481) | |
| 1337-1513, gnl|bosTau2|chr2 (47805739-47805911) | |
| 1337-1513, gnl|Hg17|chr4 (74306674-74306504) | |
| 1337-1513, gnl|Mm7|chr5 (90200088-90199918) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| clu (0.358938) | |
| eye (0.341006) | |
| cte (0.29274) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| mga (0.160205) | |
| isp (0.150376) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.358938) | |
| eye (0.341006) | |
| cte (0.29274) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| mga (0.160205) | |
| isp (0.150376) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |