Ss1.1-Lym2-sn62_G04.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGTCACCAAAGTTATTGTCCGAAACTTGAATAAAATCATTGATATTAACTACTACCCT ATCCCAGAGGCAAGTTTATCAAATAAACGCCATCGCCCCATTGGAATTGGGGTACAAGGT CTGGCAGATGCTTTTATTCTGATGAGATACCCTTTTGAGAGTCCAGAGGCCCAGTTATTG AATAAGCAGATCTTTGAAACCATCTATTATGGAGCCTTGGAAGCTAGCTGTGACCTGGCC AAGGAGTATGGCCCCTATGAAACCTATGAGGGCTCTCCAGTCAGCAAAGGAATCCTTCAG TACGACATGTGGAACGTTACTCCTACAGACCTGTGGGACTGGAAGCTCCTGAAGGAGAAG ATTGCGAAGTATGGCATACGAAACAGCTTACTTATCGCGCCGATGCCTACTGCTTCCACC GCTCAGATTTTGGGAAATAATGAGTCCATTGAACCTTACACCAGTAATATCTACACTCGC AGAGTCTTGTCAGGAGAATTTCAGATTGTAAATCCTCACTTACTGAAAGATCTTACGGAG CGGGGCCTGTGGAATGAAGAGATGAAAAACCAGATTATTGCATGCAATGGCTCTATCCAG AGCATACCAGAGATTCCTGATGACCTGAAGCAGCTTTATAAGACTGTATGGGAAATCTCC CAGAAAACTGTCCTCAAGATGGCAGCTGAGAGAGGCGCTTTCATTGATCAAAGCCAGTCT TTGAACATACACATTGCTGAGCCCAACTATGGCAAACTCACGAGTATGCACTTCTACGGC TGGAAACAGGGTTTGAAGACTGGGATGTATTATTTAAGGACAAGACCAGCAGCTAATCCG ATCCAGTTCACTCTCAATAAGGAGAAGCTGAAAGATAAGGAAAAGGTTTCAAAAGAGGAG GAGAAGGAGAGGAACACGGCGGCCATGGTGTGCTCTTTGGAGAACAGAGATGAATGTCTG ATGTGTGGATCCTGAGGTTCGGCTTTCGGGAGACCAGCGTTCCTTCAACAGCCAAACGCT TCTTTAGCATAGTTCTTTGTAGTGGGTTTGCTTGAAGTGGTGAGGCTTTGCTGGACCTTA TTGAAGCAAAAGGATCAAATGATTTAAAGTATTGTTTCTATATAAAGCGTGAAAGTAATG ATTTTTAAAAGTTGATATATTGGGAATCAAATAGATGTTTTAGGAATGCACCGGAAGCCA TCTTGCAGACAGGGAGTGGTTAAGTAGGGCTTCATCACCCACCCAGCACCCCTTTCCTGG TGACTTCAGTTTTGGTAGGGAGACTTAGTTTTGCTGCTCTGACTGGCGTTTCCATAGAAG CAAAACTGAGTCATAACCTGTGAGAAGTGTTGACAGGACCTTTATCTGGACGAGGTCCTA TTGGTCATTCTGAAATAAAGATACTCACCTATCCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGTCACCAAAGTTATTGTCCGAAACTTGAATAAAATCATTGATATTAACTACTACCCT ATCCCAGAGGCAAGTTTATCAAATAAACGCCATCGCCCCATTGGAATTGGGGTACAAGGT CTGGCAGATGCTTTTATTCTGATGAGATACCCTTTTGAGAGTCCAGAGGCCCAGTTATTG AATAAGCAGATCTTTGAAACCATCTATTATGGAGCCTTGGAAGCTAGCTGTGACCTGGCC AAGGAGTATGGCCCCTATGAAACCTATGAGGGCTCTCCAGTCAGCAAAGGAATCCTTCAG TACGACATGTGGAACGTTACTCCTACAGACCTGTGGGACTGGAAGCTCCTGAAGGAGAAG ATTGCGAAGTATGGCATACGAAACAGCTTACTTATCGCGCCGATGCCTACTGCTTCCACC GCTCAGATTTTGGGAAATAATGAGTCCATTGAACCTTACACCAGTAATATCTACACTCGC AGAGTCTTGTCAGGAGAATTTCAGATTGTAAATCCTCACTTACTGAAAGATCTTACGGAG CGGGGCCTGTGGAATGAAGAGATGAAAAACCAGATTATTGCATGCAATGGCTCTATCCAG AGCATACCAGAGATTCCTGATGACCTGAAGCAGCTTTATAAGACTGTATGGGAAATCTCC CAGAAAACTGTCCTCAAGATGGCAGCTGAGAGAGGCGCTTTCATTGATCAAAGCCAGTCT TTGAACATACACATTGCTGAGCCCAACTATGGCAAACTCACGAGTATGCACTTCTACGGC TGGAAACAGGGTTTGAAGACTGGGATGTATTATTTAAGGACAAGACCAGCAGCTAATCCG ATCCAGTTCACTCTCAATAAGGAGAAGCTGAAAGATAAGGAAAAGGTTTCAAAAGAGGAG GAGAAGGAGAGGAACACGGCGGCCATGGTGTGCTCTTTGGAGAACAGAGATGAATGTCTG ATGTGTGGATCCTGAGGTTCGGCTTTCGGGAGACCAGCGTTCCTTCAACAGCCAAACGCT TCTTTAGCATAGTTCTTTGTAGTGGGTTTGCTTGAAGTGGTGAGGCTTTGCTGGACCTTA TTGAAGCAAAAGGATCAAATGATTTAAAGTATTGTTTCTATATAAAGCGTGAAAGTAATG ATTTTTAAAAGTTGATATATTGGGAATCAAATAGATGTTTTAGGAATGCACCGGAAGCCA TCTTGCAGACAGGGAGTGGTTAAGTAGGGCTTCATCACCCACCCAGCACCCCTTTCCTGG TGACTTCAGTTTTGGTAGGGAGACTTAGTTTTGCTGCTCTGACTGGCGTTTCCATAGAAG CAAAACTGAGTCATAACCTGTGAGAAGTGTTGACAGGACCTTTATCTGGACGAGGTCCTA TTGGTCATTCTGAAATAAAGATACTCACCTATCCAAAAAAAAAAAAAA |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 65-291, gnl|bosTau2|chr15 (33186807-33187033) | |
| 65-291, gnl|Hg17|chr11 (4104836-4105062) | |
| 65-291, gnl|Mm7|chr7 (98506724-98506950) | |
| 598-790, gnl|bosTau2|chr15 (33193708-33193900) | |
| 598-790, gnl|canFam2|chr21 (29634663-29634863) | |
| 598-790, gnl|danRer3|chr21 (16755839-16756031) | |
| 598-790, gnl|echTel1|scaffold_285415 (64205-64405) | |
| 598-790, gnl|fr1|chrUn (49682068-49682268) | |
| 598-790, gnl|galGal2|chrUn (79653750-79653950) | |
| 598-790, gnl|hg17|chr11 (4112887-4113087) | |
| 598-790, gnl|Hg17|chr11 (4112885-4113077) | |
| 598-790, gnl|loxAfr1|scaffold_13375 (90065-90265) | |
| 598-790, gnl|mm7|chr7 (98512976-98513176) | |
| 598-790, gnl|Mm7|chr7 (98512974-98513166) | |
| 598-790, gnl|monDom2|scaffold_74 (7315388-7315588) | |
| 598-790, gnl|oryCun1|scaffold_199979 (39390-39190) | |
| 598-790, gnl|panTro1|chr9 (4248115-4248315) | |
| 598-790, gnl|rheMac2|chr14 (69425823-69425623) | |
| 598-790, gnl|rn3|chr14 (77413163-77413351) | |
| 598-790, gnl|tetNig1|chr7 (5182622-5182814) | |
| 598-790, gnl|xenTro1|scaffold_1188 (188687-188495) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-291, gnl|bosTau2|chr15 (33186807-33187033) | |
| 65-291, gnl|Hg17|chr11 (4104836-4105062) | |
| 65-291, gnl|Mm7|chr7 (98506724-98506950) | |
| 598-790, gnl|bosTau2|chr15 (33193708-33193900) | |
| 598-790, gnl|canFam2|chr21 (29634663-29634863) | |
| 598-790, gnl|danRer3|chr21 (16755839-16756031) | |
| 598-790, gnl|echTel1|scaffold_285415 (64205-64405) | |
| 598-790, gnl|fr1|chrUn (49682068-49682268) | |
| 598-790, gnl|galGal2|chrUn (79653750-79653950) | |
| 598-790, gnl|hg17|chr11 (4112887-4113087) | |
| 598-790, gnl|Hg17|chr11 (4112885-4113077) | |
| 598-790, gnl|loxAfr1|scaffold_13375 (90065-90265) | |
| 598-790, gnl|mm7|chr7 (98512976-98513176) | |
| 598-790, gnl|Mm7|chr7 (98512974-98513166) | |
| 598-790, gnl|monDom2|scaffold_74 (7315388-7315588) | |
| 598-790, gnl|oryCun1|scaffold_199979 (39390-39190) | |
| 598-790, gnl|panTro1|chr9 (4248115-4248315) | |
| 598-790, gnl|rheMac2|chr14 (69425823-69425623) | |
| 598-790, gnl|rn3|chr14 (77413163-77413351) | |
| 598-790, gnl|tetNig1|chr7 (5182622-5182814) | |
| 598-790, gnl|xenTro1|scaffold_1188 (188687-188495) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| eye (0.511509) | |
| hea (0.408998) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| thg (0.253582) | |
| cbl (0.229595) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| pty (0.142714) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.511509) | |
| hea (0.408998) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| thg (0.253582) | |
| cbl (0.229595) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| pty (0.142714) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| cty (0.10408) |