Non-Coding RNA Search

Ss1.1-Lym2-sn62_G07.f.5

Sequence:


               
               GGCCAATGATATTTTCACTTTAAAGTCATTTTTGGGTTTGCTGGTGGACTCACTGGTCGC
GATTATAGGCGAACCCCTTATTGCTCTTTAGTCGGGTGTGAAAGTTTTATTTTTCACTCT
CTGTTGACTTGGCTGCAGATTGGCACCAGGCAGAGTTTCCAGATACTATTTTATGGATTG
GTTTTAATTTTCAAGAGTTGGGTTTTTCAGGGTCGAGGTGGCATCTTGTTTCGTCAGAGT
GGCACAGCAGCCATCGGTGCAGGATATCCTGTGTCGTGGACCTGTCGGGGCCCAGTCATT
GTGTCTGTTGTTGAGTCTCTAATCTCAGCCGCTCTTCTGCTGCTTCTCTGAAGCTTTTGG
CCTTGACACTGGCCCATATATCTTGTCGTTAGAACAAGCGGCTTCTCTGTGGTGTCCTTG
AGACCCTGTCGGTTTCCCTTAGTCCTGGCAGGGGTCCGTGTCACTTGGGAAGCACATTCA
ACCTGGCAGGTGACATGGATGAGCGGCTTCCCCCAGGACCTGTCCTGGCCCGTGAATGCC
TGTCTGTGCATCTGCACTGAACACCCTCTGAGTAAGGGTTTCACGTCCCTGTGAGGTTTC
AATACCTGTGCTGCCAATGTCACAGCAGAGTCTGGGAATAAAAATATTTATCTGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAATGATATTTTCACTTTAAAGTCATTTTTGGGTTTGCTGGTGGACTCACTGGTCGC
GATTATAGGCGAACCCCTTATTGCTCTTTAGTCGGGTGTGAAAGTTTTATTTTTCACTCT
CTGTTGACTTGGCTGCAGATTGGCACCAGGCAGAGTTTCCAGATACTATTTTATGGATTG
GTTTTAATTTTCAAGAGTTGGGTTTTTCAGGGTCGAGGTGGCATCTTGTTTCGTCAGAGT
GGCACAGCAGCCATCGGTGCAGGATATCCTGTGTCGTGGACCTGTCGGGGCCCAGTCATT
GTGTCTGTTGTTGAGTCTCTAATCTCAGCCGCTCTTCTGCTGCTTCTCTGAAGCTTTTGG
CCTTGACACTGGCCCATATATCTTGTCGTTAGAACAAGCGGCTTCTCTGTGGTGTCCTTG
AGACCCTGTCGGTTTCCCTTAGTCCTGGCAGGGGTCCGTGTCACTTGGGAAGCACATTCA
ACCTGGCAGGTGACATGGATGAGCGGCTTCCCCCAGGACCTGTCCTGGCCCGTGAATGCC
TGTCTGTGCATCTGCACTGAACACCCTCTGAGTAAGGGTTTCACGTCCCTGTGAGGTTTC
AATACCTGTGCTGCCAATGTCACAGCAGAGTCTGGGAATAAAAATATTTATCTGAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-404, + strand, RNAz p=0.998135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-404, + strand, RNAz p=0.998135

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_022750, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_022750, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               45-451, gnl|bosTau2|chr4 (57127249-57126804)
               

               
               45-451, gnl|Hg17|chr7 (139177357-139176912)
               


               
               484-655, gnl|bosTau2|chr4 (57126809-57126637)
               

               
               484-655, gnl|Hg17|chr7 (139176917-139176734)
               

               
               484-655, gnl|Mm7|chr6 (39017516-39017341)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-451, gnl|bosTau2|chr4 (57127249-57126804)
               

               
               45-451, gnl|Hg17|chr7 (139177357-139176912)
               


               
               484-655, gnl|bosTau2|chr4 (57126809-57126637)
               

               
               484-655, gnl|Hg17|chr7 (139176917-139176734)
               

               
               484-655, gnl|Mm7|chr6 (39017516-39017341)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               duo (0.518403)
               

               
               cov (0.264306)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.518403)
               

               
               cov (0.264306)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

	45-451, gnl\|bosTau2\|chr4 (57127249-57126804)
	45-451, gnl\|Hg17\|chr7 (139177357-139176912)

	484-655, gnl\|bosTau2\|chr4 (57126809-57126637)
	484-655, gnl\|Hg17\|chr7 (139176917-139176734)
	484-655, gnl\|Mm7\|chr6 (39017516-39017341)

	duo (0.518403)
	cov (0.264306)
	nep (0.183925)
	eye (0.170503)
	ute (0.132784)
	jej (0.0989218)