Non-Coding RNA Search

Ss1.1-Lym2-sn65_F12.f.5

Sequence:


               
               AGTGACTTACAGAAGACTTTCGAAATTGAACTTTAAGCAGTCCTTATGGCTTATGTATTT
TGTCCTTACTTAGGTAAGGGAGGGGCATGGAGGTCAGAGGAGCCAAGGGAACTTTGCGTT
CCCAACCAGTACACTTTCCACTGATCCCAAAGGTCCCAAGGAGCATGTCCAGACATAGAA
TGCTGAGGGAGGCGATTGGTGAAAGTGGAGAAAACCATTCCTAGAGAAGAGCTTCTTGCA
ATTAGACTAAAGAAGTCAAGGAAATGTTACCCTTTGTCCCCCTCATCCTTCAGCCCCTTA
TAAATCTCTGGCAGCAGAGAGGCAGAAGTATCTGAACAGGAATCTGTATTCAAAGCACAT
TTACTGGAATATAAAACACAACGGGAAGCAAAATGACCTCCCTTTGTTCAAATTTCAGGC
CATTCACCTGCTTCCTCTCTCAATACTAGACTCTTCTTACAGATCAAGAACAGAGTGGCC
TGTGCTTGGGCTGGGAATGAGAGGCAGCCTGTGCTGCCAGAATTCCCAGGAAGGCACATC
AGTAGCTGCCCAGCAGAGCTATATTTTTGGGGTAAAGTTGAGCTTCCATTTTGAGTAAAA
ATAAATATTATAAATATATATCGAAAAGCCAAAATCTTTATTTTTATGCATTTAGAATAT
TTTAAATAGTTCTCAATATTAAAAAGTTGTATGAGTTGTAAGTAATCTTGCCAAAGGTAA
AAGGGTTAGCTGTAAGAAATTGTATATAAGATTGATTTATCACTGATGCCTATTGAAGTA
AAAAGAGGAAGGGCTGGAAGTTGCAGACGGGATCCCTGGCTGGCTTGGTATCATTCACTG
TAAGTAGCACATTGCAACAACAATCACGCTTTTGACCAATACAGTCACTAGGTTGTAGTT
TTAAATAAAGAGCGAGCAGTATTGTCCTGGTTTTAAACCTATAATGAAATTCTAATGTCA
TTATTTTAATGGAATCAATCTACTCTCTAGAGAATATGTATTTTCTTTTACATATTGCTG
CAGTTTCCTTCTGTTAATCCTTTAACACTAGTGACAATGACATAATCATATCCACAGAGG
GGAACACAGGTTACTGTGTTGGTTTGTCCTGTAGGTGTTGGTGGATTTTGTTTTGTCCTT
TGTTTTGTTCCCATGAGTGTTGTAGGGATGGAGATTCTGGTTTTATTCGCACTGTGTGTG
TGTGTGTGTGTCCCTCCCCACCCCTCTCCCCTGTGGCGAGCAGAACATCCCATTGCCAGT
TGCAGCCACTTGACCTCTGGTAACATGAGATCCCATCTCATTTTTACTTTTGAACGTTGG
CCTTACAATCAAATGTAAGTTATATATATTTGTACTGATGAGAATTTATAATCTGCTTTA
ACAAAAATAAATGTTCGTGGTAGAAAAAAAAAAAAATGAAGAGCTATTCTTTCCCCTTTT
CTTTATTAGCAAGTGAGTTTTGGTTCTTTTTGGTCTTGTTCTCTCTCCATCACGGCTGCC
ACAGATCTCTAGTTTAATGGCTGGAAAATCTTTTGTTGGACTACCATATTCTTCAATTCA
TACTTTAGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGACTTACAGAAGACTTTCGAAATTGAACTTTAAGCAGTCCTTATGGCTTATGTATTT
TGTCCTTACTTAGGTAAGGGAGGGGCATGGAGGTCAGAGGAGCCAAGGGAACTTTGCGTT
CCCAACCAGTACACTTTCCACTGATCCCAAAGGTCCCAAGGAGCATGTCCAGACATAGAA
TGCTGAGGGAGGCGATTGGTGAAAGTGGAGAAAACCATTCCTAGAGAAGAGCTTCTTGCA
ATTAGACTAAAGAAGTCAAGGAAATGTTACCCTTTGTCCCCCTCATCCTTCAGCCCCTTA
TAAATCTCTGGCAGCAGAGAGGCAGAAGTATCTGAACAGGAATCTGTATTCAAAGCACAT
TTACTGGAATATAAAACACAACGGGAAGCAAAATGACCTCCCTTTGTTCAAATTTCAGGC
CATTCACCTGCTTCCTCTCTCAATACTAGACTCTTCTTACAGATCAAGAACAGAGTGGCC
TGTGCTTGGGCTGGGAATGAGAGGCAGCCTGTGCTGCCAGAATTCCCAGGAAGGCACATC
AGTAGCTGCCCAGCAGAGCTATATTTTTGGGGTAAAGTTGAGCTTCCATTTTGAGTAAAA
ATAAATATTATAAATATATATCGAAAAGCCAAAATCTTTATTTTTATGCATTTAGAATAT
TTTAAATAGTTCTCAATATTAAAAAGTTGTATGAGTTGTAAGTAATCTTGCCAAAGGTAA
AAGGGTTAGCTGTAAGAAATTGTATATAAGATTGATTTATCACTGATGCCTATTGAAGTA
AAAAGAGGAAGGGCTGGAAGTTGCAGACGGGATCCCTGGCTGGCTTGGTATCATTCACTG
TAAGTAGCACATTGCAACAACAATCACGCTTTTGACCAATACAGTCACTAGGTTGTAGTT
TTAAATAAAGAGCGAGCAGTATTGTCCTGGTTTTAAACCTATAATGAAATTCTAATGTCA
TTATTTTAATGGAATCAATCTACTCTCTAGAGAATATGTATTTTCTTTTACATATTGCTG
CAGTTTCCTTCTGTTAATCCTTTAACACTAGTGACAATGACATAATCATATCCACAGAGG
GGAACACAGGTTACTGTGTTGGTTTGTCCTGTAGGTGTTGGTGGATTTTGTTTTGTCCTT
TGTTTTGTTCCCATGAGTGTTGTAGGGATGGAGATTCTGGTTTTATTCGCACTGTGTGTG
TGTGTGTGTGTCCCTCCCCACCCCTCTCCCCTGTGGCGAGCAGAACATCCCATTGCCAGT
TGCAGCCACTTGACCTCTGGTAACATGAGATCCCATCTCATTTTTACTTTTGAACGTTGG
CCTTACAATCAAATGTAAGTTATATATATTTGTACTGATGAGAATTTATAATCTGCTTTA
ACAAAAATAAATGTTCGTGGTAGAAAAAAAAAAAAATGAAGAGCTATTCTTTCCCCTTTT
CTTTATTAGCAAGTGAGTTTTGGTTCTTTTTGGTCTTGTTCTCTCTCCATCACGGCTGCC
ACAGATCTCTAGTTTAATGGCTGGAAAATCTTTTGTTGGACTACCATATTCTTCAATTCA
TACTTTAGGCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1562, gnl|bosTau2|chr10 (59798037-59796463)
               

               
               1-1562, gnl|Hg17|chr14 (72813074-72811534)
               

               
               1-1562, gnl|Mm7|chr12 (81791511-81789976)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1562, gnl|bosTau2|chr10 (59798037-59796463)
               

               
               1-1562, gnl|Hg17|chr14 (72813074-72811534)
               

               
               1-1562, gnl|Mm7|chr12 (81791511-81789976)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               pro (1.5361)
               

               
               mgp (1.38408)
               

               
               lyg (0.399308)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.5361)
               

               
               mgp (1.38408)
               

               
               lyg (0.399308)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-1562, gnl\|bosTau2\|chr10 (59798037-59796463)
	1-1562, gnl\|Hg17\|chr14 (72813074-72811534)
	1-1562, gnl\|Mm7\|chr12 (81791511-81789976)

	pro (1.5361)
	mgp (1.38408)
	lyg (0.399308)
	duo (0.345602)
	vin (0.332557)
	lun (0.300978)
	cte (0.29274)
	kid (0.259471)
	sug (0.254582)
	cbe (0.239234)
	ece (0.229305)
	hea (0.204499)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	ssp (0.13552)
	ste (0.135208)
	bla (0.124347)
	tra (0.123092)
	med (0.116252)
	spc (0.113366)
	jej (0.0989218)