Non-Coding RNA Search

Ss1.1-Lym2-sn65_G08.f.5

Sequence:


               
               TTATTTTTCCTTTTTAAGCATTTTTTTTAAGAGATGGAAAGGAAAATAATAGTTGGGTTG
CCAAACATGAAAACTATATCACAGTTGAGGATCAGGATATAAATCAAATTCTAGGTCTTT
GGACCCTCTGTGGAAATATTTTCTAACCAGAATTTCAATTTGGCCTTTTCAAAGGAAGGC
TTAGAGTGGTAGCAAGGGGGTTGTCTCAGTAGGAAACCTTATAATTTCTGATTTAAAGAG
GAGGTGATATTTTAATTGTTTGAGTTAAGCTTCTTCCGAATTTCAGGTGCATATACCCAC
TTAGGGCTTTCCAAGTCAATTCACACACATTCTGTTAAACGAGTCCCCTTTTTTCCTGCT
CACATCCTATGTCATTTCCTGTAATGGATCGTCCTCCAGCTAGGGGAATTTTTCCCCCTT
GCCTTCTTCATTTAGGAACAGAAGTTAAATCTCATTTCCAGAATGAATGTGAACATTCAC
AGAGATGAACTCTTAACTGCGTTCTGTTCATATTAATTTTGGAACTGTTGAGATACGTCC
TATTACGTTACCAAATAAGTACTGGGTTTAGTAGAAGGAAGTGACCTCCCCCCCCATGCA
CCCCCCCAATCCTGGAACACTCAGAATGTTCCGATTTCCCTCTTTCCACTCTGCCAAGCC
TCCTGCTGCGTTTTACCTGAAAGAGGCAGGGCCCTTTGAAGACCCTTCCTCCTGATGGCT
ATTTTTCTGGAGTCAGGGAAGCCAGGACATGCTTATACATGTCACAAAAGGATGGTGCAC
TCAGAGCTTCGTTGTACCCAGGATTTTTAATTCCTCTCGCAGTATTGACCAGCAGAGAGA
GGTGGTAGCTGCTTCTAGCCTTCCACCTGTGTTTGTAAATAACCTTCGCCATTCAGGCAT
TTTAATGGACTTCAGACAGTATCTATTTACAAAAGTTGTGCCCTCCACTTGCATTACTAA
CCATATCAGCCATAATAACAATGATCATAGTTTTTTTTTTTTTAATGTTTTTGTTCTCAA
CTTTTCTTCATTGACTTCAGAATGAGGTATATCAGACCCATTTTTTAAAAGCCTGGAACT
TGTTTCTTTAAAAGATTGTGCTAACATCCAACTTGTTTTTAAATTACTCATCAAGGATTT
AGAAAAATATTCGTGGCATGAATTTCAATTCTTTTTTATAATATAAGTATTTTTCTGATA
GATTAGACAAAAAGGATATAATTGACTTATCTTCATTATAATTGTCATATATATTTCCAG
AAGTAAATGGATTTTGAAGTATTTTTATTTTTGAACTTTATTTAAAGTATTGTGATGACA
TGTTCAACTTTTGCATGTATGTAGCTTTTGAAGTAAAAAAATAAAATGAAAGAAATAGGA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTTTCCTTTTTAAGCATTTTTTTTAAGAGATGGAAAGGAAAATAATAGTTGGGTTG
CCAAACATGAAAACTATATCACAGTTGAGGATCAGGATATAAATCAAATTCTAGGTCTTT
GGACCCTCTGTGGAAATATTTTCTAACCAGAATTTCAATTTGGCCTTTTCAAAGGAAGGC
TTAGAGTGGTAGCAAGGGGGTTGTCTCAGTAGGAAACCTTATAATTTCTGATTTAAAGAG
GAGGTGATATTTTAATTGTTTGAGTTAAGCTTCTTCCGAATTTCAGGTGCATATACCCAC
TTAGGGCTTTCCAAGTCAATTCACACACATTCTGTTAAACGAGTCCCCTTTTTTCCTGCT
CACATCCTATGTCATTTCCTGTAATGGATCGTCCTCCAGCTAGGGGAATTTTTCCCCCTT
GCCTTCTTCATTTAGGAACAGAAGTTAAATCTCATTTCCAGAATGAATGTGAACATTCAC
AGAGATGAACTCTTAACTGCGTTCTGTTCATATTAATTTTGGAACTGTTGAGATACGTCC
TATTACGTTACCAAATAAGTACTGGGTTTAGTAGAAGGAAGTGACCTCCCCCCCCATGCA
CCCCCCCAATCCTGGAACACTCAGAATGTTCCGATTTCCCTCTTTCCACTCTGCCAAGCC
TCCTGCTGCGTTTTACCTGAAAGAGGCAGGGCCCTTTGAAGACCCTTCCTCCTGATGGCT
ATTTTTCTGGAGTCAGGGAAGCCAGGACATGCTTATACATGTCACAAAAGGATGGTGCAC
TCAGAGCTTCGTTGTACCCAGGATTTTTAATTCCTCTCGCAGTATTGACCAGCAGAGAGA
GGTGGTAGCTGCTTCTAGCCTTCCACCTGTGTTTGTAAATAACCTTCGCCATTCAGGCAT
TTTAATGGACTTCAGACAGTATCTATTTACAAAAGTTGTGCCCTCCACTTGCATTACTAA
CCATATCAGCCATAATAACAATGATCATAGTTTTTTTTTTTTTAATGTTTTTGTTCTCAA
CTTTTCTTCATTGACTTCAGAATGAGGTATATCAGACCCATTTTTTAAAAGCCTGGAACT
TGTTTCTTTAAAAGATTGTGCTAACATCCAACTTGTTTTTAAATTACTCATCAAGGATTT
AGAAAAATATTCGTGGCATGAATTTCAATTCTTTTTTATAATATAAGTATTTTTCTGATA
GATTAGACAAAAAGGATATAATTGACTTATCTTCATTATAATTGTCATATATATTTCCAG
AAGTAAATGGATTTTGAAGTATTTTTATTTTTGAACTTTATTTAAAGTATTGTGATGACA
TGTTCAACTTTTGCATGTATGTAGCTTTTGAAGTAAAAAAATAAAATGAAAGAAATAGGA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               612-721, - strand, RNAz p=0.8462

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               612-721, - strand, RNAz p=0.8462

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-589, gnl|bosTau2|chr22 (24000690-24001275)
               

               
               1-589, gnl|Hg17|chr3 (71815927-71815342)
               

               
               1-589, gnl|Mm7|chr6 (99714441-99713911)
               


               
               612-1376, gnl|bosTau2|chr22 (24001277-24002046)
               

               
               612-1376, gnl|Hg17|chr3 (71815340-71814579)
               

               
               612-1376, gnl|Mm7|chr6 (99713909-99713208)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-589, gnl|bosTau2|chr22 (24000690-24001275)
               

               
               1-589, gnl|Hg17|chr3 (71815927-71815342)
               

               
               1-589, gnl|Mm7|chr6 (99714441-99713911)
               


               
               612-1376, gnl|bosTau2|chr22 (24001277-24002046)
               

               
               612-1376, gnl|Hg17|chr3 (71815340-71814579)
               

               
               612-1376, gnl|Mm7|chr6 (99713909-99713208)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               fco (0.78604)
               

               
               bla (0.373042)
               

               
               ski (0.29347)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               bla (0.373042)
               

               
               ski (0.29347)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	1-589, gnl\|bosTau2\|chr22 (24000690-24001275)
	1-589, gnl\|Hg17\|chr3 (71815927-71815342)
	1-589, gnl\|Mm7\|chr6 (99714441-99713911)

	612-1376, gnl\|bosTau2\|chr22 (24001277-24002046)
	612-1376, gnl\|Hg17\|chr3 (71815340-71814579)
	612-1376, gnl\|Mm7\|chr6 (99713909-99713208)

	fco (0.78604)
	bla (0.373042)
	ski (0.29347)
	hlv (0.278513)
	pla (0.267344)
	kid (0.259471)
	mas (0.210305)
	fcc (0.197785)
	aor (0.195274)
	eye (0.170503)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	ret (0.128733)
	med (0.116252)
	cbl (0.114797)
	spc (0.113366)