Ss1.1-Lym2-sn68_A06.f.5.5
|
CAACCTCACTGTGCAAGCTACAGTGCCTGGACTTTGTTCTTCACCTTCACCCAGACCTCC
AAAAACCACCCCTTCTTTGTTTCTCGCTGGTGGCAAACCCCTGGAGCTGAGGGAGATTCC
TGTTGAAAACTGCAAGATTAACAGATATGGCTACTTTATGGCCACCATCACAATTGTAGC
GGGAATTCTACAAGTTAACATCCTCCAAGTAACAGATGTGCTGACACCAGGGCCACAGCC
TGATGACTCCCTGGTGGATTTTGTCCTGACCTGCCAGGGGAGCATCCCCACAGAGATCTG
TACCATAATCTCTGACCCCACCTGCCAGGTCACCCAGGACACAGTCTGCAACACTGTGGA
TGAAGACCTGGGTGACACTTGCTTGCTGACGGTGAGGAGAGCCTTCAGCAGTCCTGGGAC
CTACTGCATGAACCTCACTCTGGGGGATGATGCAAGTCTGGCCCTCACGAGCACCCTTGT
CTCTATCCCCGGCAGAGACCCAGCCTTCCTTTTAAGAATGACAAATGGGATCCTGGTCTT
CGTTGGCTTCTTGACCATATTTGTCACTGTGATTGCCATTTTGGTGTCCAAAAAATACAG
GAAATACAAAGCGATAGAAAGCAACACTGGGATCGTGGTCAAAGACAAAGGCCTGAATGT
TTTCCTCAGTCGTGCAAAGACCATGTTCTTCCCTGGAAATCAGGAGAAAGATCCACTGCT
CAAGAACTAACCGGGAATTCTTTAAATCCTCAACCTTATTTCTGGCCAAGGGGTCACTCT
TCAGTGCCGTTTACATGAACTGTGCTAGAGTGGATGACAGCTAACTTTTTAAAAAAGGTT
ACTGTAAACTATATATCATGGTTTAGGGTGGTCCAAAATTTTTTATAGGTTAAATGACAT
TTTAGAGACCTGGAGAGGAATTACATTATGTGCAGCCTCGGCCATGTTATGTAACTGACA
AAAAACCTCTTAGCAGTGCTTTCTTTCATGATGATTTATATTTCACTTATAATGTCTTAG
ATGATTAGTAGGAATAGATTCCCTGAATCCAGAATAGCAGGAGAAGGTACTATTCATCAG
AGGCTGAACTAGGTTACCTGGAAGGAGAGGCTGGACATTTTCTAGCTTTCCATATAACCA
TATACATAAAACCAATGTATTTCTGTTCTGAAAATCATGTTTCAAGTTACCTGAATCCTA
TTTCAATGAATGTGTACACGTTCCCAACAGAACAATAACAGGTAACCTGTGCATCATGGA
TATACTAAAACAAACAAGAACAAAACTAATGTAAGTGTGAATATTTTTGTGACCACCTGC
CCAGCCATGCTGTGTAAAGGAATGGTACTCATTCATTCATTTTTCCCATGGACATCTATG
TAAACTTTCTATATATCAGGCACATTGCTAGATACATGGCCCTGCCCTCAGAGTGTTGAC
ATTCTTGTGTATATATCTGAATTTCTGCACACTCTGGCACACATATTTGAAAAAATATAT
TATCCTTTTCCAAATAAGGAGGCCCCTGGTTTTCCTACTGCTTTCCTCATTCAAATGATA
TAGAAACTTAGTAAGGATTTTGCTTTGATTTGTAACTACAACTACCATATGTCAATCATG
ATTTTTTTTTCCTTCCTGGAAAATAAAGTATGAAAATACTCAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAACCTCACTGTGCAAGCTACAGTGCCTGGACTTTGTTCTTCACCTTCACCCAGACCTCC
AAAAACCACCCCTTCTTTGTTTCTCGCTGGTGGCAAACCCCTGGAGCTGAGGGAGATTCC
TGTTGAAAACTGCAAGATTAACAGATATGGCTACTTTATGGCCACCATCACAATTGTAGC
GGGAATTCTACAAGTTAACATCCTCCAAGTAACAGATGTGCTGACACCAGGGCCACAGCC
TGATGACTCCCTGGTGGATTTTGTCCTGACCTGCCAGGGGAGCATCCCCACAGAGATCTG
TACCATAATCTCTGACCCCACCTGCCAGGTCACCCAGGACACAGTCTGCAACACTGTGGA
TGAAGACCTGGGTGACACTTGCTTGCTGACGGTGAGGAGAGCCTTCAGCAGTCCTGGGAC
CTACTGCATGAACCTCACTCTGGGGGATGATGCAAGTCTGGCCCTCACGAGCACCCTTGT
CTCTATCCCCGGCAGAGACCCAGCCTTCCTTTTAAGAATGACAAATGGGATCCTGGTCTT
CGTTGGCTTCTTGACCATATTTGTCACTGTGATTGCCATTTTGGTGTCCAAAAAATACAG
GAAATACAAAGCGATAGAAAGCAACACTGGGATCGTGGTCAAAGACAAAGGCCTGAATGT
TTTCCTCAGTCGTGCAAAGACCATGTTCTTCCCTGGAAATCAGGAGAAAGATCCACTGCT
CAAGAACTAACCGGGAATTCTTTAAATCCTCAACCTTATTTCTGGCCAAGGGGTCACTCT
TCAGTGCCGTTTACATGAACTGTGCTAGAGTGGATGACAGCTAACTTTTTAAAAAAGGTT
ACTGTAAACTATATATCATGGTTTAGGGTGGTCCAAAATTTTTTATAGGTTAAATGACAT
TTTAGAGACCTGGAGAGGAATTACATTATGTGCAGCCTCGGCCATGTTATGTAACTGACA
AAAAACCTCTTAGCAGTGCTTTCTTTCATGATGATTTATATTTCACTTATAATGTCTTAG
ATGATTAGTAGGAATAGATTCCCTGAATCCAGAATAGCAGGAGAAGGTACTATTCATCAG
AGGCTGAACTAGGTTACCTGGAAGGAGAGGCTGGACATTTTCTAGCTTTCCATATAACCA
TATACATAAAACCAATGTATTTCTGTTCTGAAAATCATGTTTCAAGTTACCTGAATCCTA
TTTCAATGAATGTGTACACGTTCCCAACAGAACAATAACAGGTAACCTGTGCATCATGGA
TATACTAAAACAAACAAGAACAAAACTAATGTAAGTGTGAATATTTTTGTGACCACCTGC
CCAGCCATGCTGTGTAAAGGAATGGTACTCATTCATTCATTTTTCCCATGGACATCTATG
TAAACTTTCTATATATCAGGCACATTGCTAGATACATGGCCCTGCCCTCAGAGTGTTGAC
ATTCTTGTGTATATATCTGAATTTCTGCACACTCTGGCACACATATTTGAAAAAATATAT
TATCCTTTTCCAAATAAGGAGGCCCCTGGTTTTCCTACTGCTTTCCTCATTCAAATGATA
TAGAAACTTAGTAAGGATTTTGCTTTGATTTGTAACTACAACTACCATATGTCAATCATG
ATTTTTTTTTCCTTCCTGGAAAATAAAGTATGAAAATACTCAAAAAAA
|
|
gi|61837583|ref|XP_601619.1| |
Protein identifier
|
gi|61837583|ref|XP_601619.1| |
|
281-497, gnl|bosTau2|chr4 (11886549-11886765) |
|
281-497, gnl|canFam2|chr14 (39901157-39901358) |
|
281-497, gnl|dasNov1|scaffold_9778 (33523-33347) |
|
281-497, gnl|echTel1|scaffold_228071 (708-922) |
|
281-497, gnl|fr1|chrUn (103717954-103717747) |
|
281-497, gnl|galGal2|chr2 (30332257-30332453) |
|
281-497, gnl|hg17|chr7 (23082800-23083013) |
|
281-497, gnl|Hg17|chr7 (23082824-23083034) |
|
281-497, gnl|mm7|chr6 (49011842-49012055) |
|
281-497, gnl|Mm7|chr6 (49011866-49012076) |
|
281-497, gnl|monDom2|scaffold_57 (3996999-3996786) |
|
281-497, gnl|oryCun1|scaffold_166191 (9642-9433) |
|
281-497, gnl|panTro1|chr6 (24154586-24154799) |
|
281-497, gnl|rheMac2|chr3 (102968745-102968532) |
|
281-497, gnl|rn3|chr4 (77454656-77454868) |
|
281-497, gnl|xenTro1|scaffold_29 (68522-68728) |
| |
|
589-1381, gnl|bosTau2|chr4 (11890982-11891780) |
|
589-1381, gnl|Hg17|chr7 (23086921-23087721) |
|
589-1381, gnl|Mm7|chr6 (49016208-49016923) |
| |
|
1414-1656, gnl|bosTau2|chr4 (11891790-11892033) |
|
1414-1656, gnl|Hg17|chr7 (23087736-23087960) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
281-497, gnl|bosTau2|chr4 (11886549-11886765) |
|
281-497, gnl|canFam2|chr14 (39901157-39901358) |
|
281-497, gnl|dasNov1|scaffold_9778 (33523-33347) |
|
281-497, gnl|echTel1|scaffold_228071 (708-922) |
|
281-497, gnl|fr1|chrUn (103717954-103717747) |
|
281-497, gnl|galGal2|chr2 (30332257-30332453) |
|
281-497, gnl|hg17|chr7 (23082800-23083013) |
|
281-497, gnl|Hg17|chr7 (23082824-23083034) |
|
281-497, gnl|mm7|chr6 (49011842-49012055) |
|
281-497, gnl|Mm7|chr6 (49011866-49012076) |
|
281-497, gnl|monDom2|scaffold_57 (3996999-3996786) |
|
281-497, gnl|oryCun1|scaffold_166191 (9642-9433) |
|
281-497, gnl|panTro1|chr6 (24154586-24154799) |
|
281-497, gnl|rheMac2|chr3 (102968745-102968532) |
|
281-497, gnl|rn3|chr4 (77454656-77454868) |
|
281-497, gnl|xenTro1|scaffold_29 (68522-68728) |
| |
|
589-1381, gnl|bosTau2|chr4 (11890982-11891780) |
|
589-1381, gnl|Hg17|chr7 (23086921-23087721) |
|
589-1381, gnl|Mm7|chr6 (49016208-49016923) |
| |
|
1414-1656, gnl|bosTau2|chr4 (11891790-11892033) |
|
1414-1656, gnl|Hg17|chr7 (23087736-23087960) |
|
ret (3.73326) |
|
mga (1.92246) |
|
liv (1.17027) |
|
clu (1.07681) |
|
rec (1.03842) |
|
lin (0.728014) |
|
kid (0.518941) |
|
thg (0.507164) |
|
bfe (0.449573) |
|
col (0.390016) |
|
ova (0.387397) |
|
lun (0.300978) |
|
ski (0.29347) |
|
spl (0.286369) |
|
tra (0.246184) |
|
cbl (0.229595) |
|
jej (0.197844) |
|
sin (0.174948) |
|
fco (0.157208) |
|
fat (0.147427) |
|
ste (0.135208) |
|
pla (0.133672) |
|
sug (0.127291) |
|
jca (0.11396) |
|
ret (3.73326) |
|
mga (1.92246) |
|
liv (1.17027) |
|
clu (1.07681) |
|
rec (1.03842) |
|
lin (0.728014) |
|
kid (0.518941) |
|
thg (0.507164) |
|
bfe (0.449573) |
|
col (0.390016) |
|
ova (0.387397) |
|
lun (0.300978) |
|
ski (0.29347) |
|
spl (0.286369) |
|
tra (0.246184) |
|
cbl (0.229595) |
|
jej (0.197844) |
|
sin (0.174948) |
|
fco (0.157208) |
|
fat (0.147427) |
|
ste (0.135208) |
|
pla (0.133672) |
|
sug (0.127291) |
|
jca (0.11396) |
