Non-Coding RNA Search

Ss1.1-Lym2-sn70_D11.f.5

Sequence:


               
               GAAAAATGAGAACAAAATGAGTTCAAATGCAACTCTGATGAATTACAGATATAATTACAT
GTCAATGTAAAATGACTAGAACTAGAACAGTAAATTGGAGGATGTTAGGCCTCAAATAAT
TCTCTCTGAACTCTACCAACTTTATTGTGGTGGAAGGGCGTGGGCACAATCTTCATGTCC
TTGGAGATGCCCACATCATGGCGTGTGGCAGGTATTCAAAGGCTTCAAATCTTGAACAAG
TTATTATTACCCTCCTACCCCCATGCCGCATCCCTTATCAAGAAGCTCCTCTACTGACTT
CTTTCCCTGAAAGCTTAAAAGTACAATTTACAATTGGTTATCATGCATTCCACCCTGTTT
TCTCAGTTCTGCATGCTCTTCCTAAAGGGCATCCTATTTTCTGTGTTCTAATTAAGGGTC
ATTCAGTATCACTGTAAGTTAGAACTGCTAAAGACATCTTGATAAAGGGTAGGTTTTTTT
AAAAAAGAATGGGAACTTATGATGGAGCCTAATAATGTGAGAAAAAAAGAATGTATACAT
GTATGTGTAACTGGGTCACCATGCTGTACAGTAGAAAAAAAATAATGTATTGGGGAAATA
AAAATTTTAAAAAAGAACATCACTGTAGATGTTAATTTATACACATGTTTGTGGGGGCAA
AATAAGACAAATAGGAGATCACTTATAGGTAGAATCTAAAAAAGGGCACAAGTGAACCTA
TCTACAAAACAGAAACAGACTCACAGACGTAAAAAACTGACTTGTGGTTGCCAAGGGGGA
GTGGGAAGGGACTGGAATGAACAGGGAGTTTGAGGTTGTAGATGCAGACTATTACCACTG
AGAATGGATAAGCAATGAGGTCCTGCTGTACAGCACAGGGAACTATATCCAGTCTCTTGG
GACAGACCACGTTGGAAGATAATGTAAGAAAAGGAATGCATGTACATATATGAAGGGTCA
CTATGCTGTGCAACAGAAATTGGTACAGTATTGTAAATCAACTCTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAATGAGAACAAAATGAGTTCAAATGCAACTCTGATGAATTACAGATATAATTACAT
GTCAATGTAAAATGACTAGAACTAGAACAGTAAATTGGAGGATGTTAGGCCTCAAATAAT
TCTCTCTGAACTCTACCAACTTTATTGTGGTGGAAGGGCGTGGGCACAATCTTCATGTCC
TTGGAGATGCCCACATCATGGCGTGTGGCAGGTATTCAAAGGCTTCAAATCTTGAACAAG
TTATTATTACCCTCCTACCCCCATGCCGCATCCCTTATCAAGAAGCTCCTCTACTGACTT
CTTTCCCTGAAAGCTTAAAAGTACAATTTACAATTGGTTATCATGCATTCCACCCTGTTT
TCTCAGTTCTGCATGCTCTTCCTAAAGGGCATCCTATTTTCTGTGTTCTAATTAAGGGTC
ATTCAGTATCACTGTAAGTTAGAACTGCTAAAGACATCTTGATAAAGGGTAGGTTTTTTT
AAAAAAGAATGGGAACTTATGATGGAGCCTAATAATGTGAGAAAAAAAGAATGTATACAT
GTATGTGTAACTGGGTCACCATGCTGTACAGTAGAAAAAAAATAATGTATTGGGGAAATA
AAAATTTTAAAAAAGAACATCACTGTAGATGTTAATTTATACACATGTTTGTGGGGGCAA
AATAAGACAAATAGGAGATCACTTATAGGTAGAATCTAAAAAAGGGCACAAGTGAACCTA
TCTACAAAACAGAAACAGACTCACAGACGTAAAAAACTGACTTGTGGTTGCCAAGGGGGA
GTGGGAAGGGACTGGAATGAACAGGGAGTTTGAGGTTGTAGATGCAGACTATTACCACTG
AGAATGGATAAGCAATGAGGTCCTGCTGTACAGCACAGGGAACTATATCCAGTCTCTTGG
GACAGACCACGTTGGAAGATAATGTAAGAAAAGGAATGCATGTACATATATGAAGGGTCA
CTATGCTGTGCAACAGAAATTGGTACAGTATTGTAAATCAACTCTATG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               659-923, gnl|bosTau2|chr10 (22528085-22527820)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               659-923, gnl|bosTau2|chr10 (22528085-22527820)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               hea (0.408998)
               

               
               aor (0.390549)
               

               
               pan (0.23596)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               ski (0.146735)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               pan (0.23596)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               ski (0.146735)

	hea (0.408998)
	aor (0.390549)
	pan (0.23596)
	gul (0.177588)
	eye (0.170503)
	lun (0.150489)
	ski (0.146735)