Ss1.1-Lym2-sn72_B06.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTGGAATTCCTTGGTTAATTGTTCTCTCTGGCTATTAGCGGAACCTGTTAGTGTGGCC CACGAAGGTCAGCGGAGCTGCGCGAGGCTAGTTGCTAAGCAAGAGGACCTTCGGTCAACT GCCACCTGGGCCTCGACGAGAGGAAGTCTCAAATTCGTCACTACCCCGAAGTCCCTGCCA TGCCTCACATCGACAACGACGTCAAACTGGACTTCAAGGATGTCCTGCTGAGACCCAAAC GCAGTACCCTTAAGTCTCGAAGTGAGGTGGATCTCACAAGATCCTTTTCATTTCGGAACT CAAAGCAGATGTACACTGGGATCCCCATTATCGCTGCCAATATGGATACTGTGGGTACCT TTGAGATGGCCAAGGTTCTTTGTAAGTTCTCCCTCTTCACGGCTGTCCATAAACACTACA GCCTCGAGCAGTGGAAAGAGTTTGCCAGCCAGAACCCTGACTGTCTTGAGCATCTGGCCG CCAGCTCGGGCACAGGCTCTTCTGATTTTGAGCAGCTGGAACAGATCCTCGATGCTATTC CCCAGGTGAAATACATATGCCTGGACGTTGCCAATGGCTACTCTGAACACTTTGTTGAAT TTGTAAAGGATGTGCGGAAGCGCTTCCCCGAACACACCATCATGGCAGGGAATGTAGTAA CAGGAGAGATGGTGGAAGAGCTGATCCTCTCTGGGGCTGACATCATCAAAGTGGGAATTG GACCAGGCTCTGTCTGTACCACCCGGAAGAAAACCGGAGTGGGGTATCCACAGCTGAGTG CGGTGATGGAGTGTGCAGATGCTGCGCACGGTCTCAAAGGCCACATCATCTCGGATGGAG GTTGCAGCTGTCCCGGCGATGTGGCCAAGGCTTTTGGGGCAGGGGCTGACTTCGTGATGC TGGGTGGCATGCTGGCGGGGCACAGTGAGTCAGGTGGTGAGCTCATCGAGAGGAATGGCA AGAAGTACAAGCTCTTCTATGGAATGAGTTCTGAAATGGCCATGAAGAAGTATGCGGGGG GCGTGGCTGAGTACAGGGCCTCAGAGGGAAAGACTGTGGAGGTGCCCTTTAAAGGGGCTG TAGAGCACACCATCCGGGACATCCTTGGAGGGATCCGTTCTACCTGCACCTATGTGGGAG CAGCTAAGCTAAAGGAGCTGAGTCGGAGAACTACCTTCATCCGTGTCACCCAGCAGGTGA ATCCCATCTTCAGTGACGAGAGCTAGACCTGACAATTCTGCCCTCCCAGGGCACCAGCAC CCCTTCTGCAATTCCCAACTCCTAGGACTCTTACTTGGTCATTTCCTACCCTCTCTCTGC TGAGGGCTCCTGCAGTGATTCTGCACTTATCTATCTGCACGTGCAAAATGCCCAGGGTAC TCACTGGGGAGGAAGCAAGGAAGGCAGGCTGAGAAAATGAAGTAAGATAATCAAACAGGA ATCTGGGGACCCGGCATTCTGAAGATTATTAAAAGGAAGAGATGCTGATTCATACATAAG GGCTTTATGTGGGCTTGGTCTGGAAGAGACAGGTCTTTAGAATCATGTTTTGTTCATCAG ATTCATTAAATAGAATCTGGAATATCTACAAAGCTCAGAAGTGTTTATATATTTTAAGTA CCTCAATAAAGAGAAATCCCAGAGAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTGGAATTCCTTGGTTAATTGTTCTCTCTGGCTATTAGCGGAACCTGTTAGTGTGGCC CACGAAGGTCAGCGGAGCTGCGCGAGGCTAGTTGCTAAGCAAGAGGACCTTCGGTCAACT GCCACCTGGGCCTCGACGAGAGGAAGTCTCAAATTCGTCACTACCCCGAAGTCCCTGCCA TGCCTCACATCGACAACGACGTCAAACTGGACTTCAAGGATGTCCTGCTGAGACCCAAAC GCAGTACCCTTAAGTCTCGAAGTGAGGTGGATCTCACAAGATCCTTTTCATTTCGGAACT CAAAGCAGATGTACACTGGGATCCCCATTATCGCTGCCAATATGGATACTGTGGGTACCT TTGAGATGGCCAAGGTTCTTTGTAAGTTCTCCCTCTTCACGGCTGTCCATAAACACTACA GCCTCGAGCAGTGGAAAGAGTTTGCCAGCCAGAACCCTGACTGTCTTGAGCATCTGGCCG CCAGCTCGGGCACAGGCTCTTCTGATTTTGAGCAGCTGGAACAGATCCTCGATGCTATTC CCCAGGTGAAATACATATGCCTGGACGTTGCCAATGGCTACTCTGAACACTTTGTTGAAT TTGTAAAGGATGTGCGGAAGCGCTTCCCCGAACACACCATCATGGCAGGGAATGTAGTAA CAGGAGAGATGGTGGAAGAGCTGATCCTCTCTGGGGCTGACATCATCAAAGTGGGAATTG GACCAGGCTCTGTCTGTACCACCCGGAAGAAAACCGGAGTGGGGTATCCACAGCTGAGTG CGGTGATGGAGTGTGCAGATGCTGCGCACGGTCTCAAAGGCCACATCATCTCGGATGGAG GTTGCAGCTGTCCCGGCGATGTGGCCAAGGCTTTTGGGGCAGGGGCTGACTTCGTGATGC TGGGTGGCATGCTGGCGGGGCACAGTGAGTCAGGTGGTGAGCTCATCGAGAGGAATGGCA AGAAGTACAAGCTCTTCTATGGAATGAGTTCTGAAATGGCCATGAAGAAGTATGCGGGGG GCGTGGCTGAGTACAGGGCCTCAGAGGGAAAGACTGTGGAGGTGCCCTTTAAAGGGGCTG TAGAGCACACCATCCGGGACATCCTTGGAGGGATCCGTTCTACCTGCACCTATGTGGGAG CAGCTAAGCTAAAGGAGCTGAGTCGGAGAACTACCTTCATCCGTGTCACCCAGCAGGTGA ATCCCATCTTCAGTGACGAGAGCTAGACCTGACAATTCTGCCCTCCCAGGGCACCAGCAC CCCTTCTGCAATTCCCAACTCCTAGGACTCTTACTTGGTCATTTCCTACCCTCTCTCTGC TGAGGGCTCCTGCAGTGATTCTGCACTTATCTATCTGCACGTGCAAAATGCCCAGGGTAC TCACTGGGGAGGAAGCAAGGAAGGCAGGCTGAGAAAATGAAGTAAGATAATCAAACAGGA ATCTGGGGACCCGGCATTCTGAAGATTATTAAAAGGAAGAGATGCTGATTCATACATAAG GGCTTTATGTGGGCTTGGTCTGGAAGAGACAGGTCTTTAGAATCATGTTTTGTTCATCAG ATTCATTAAATAGAATCTGGAATATCTACAAAGCTCAGAAGTGTTTATATATTTTAAGTA CCTCAATAAAGAGAAATCCCAGAGAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 469-565, - strand, RNAz p=0.526618 | |
| 508-627, - strand, RNAz p=0.561703 | |
| 724-832, - strand, RNAz p=0.969388 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 469-565, - strand, RNAz p=0.526618 | |
| 508-627, - strand, RNAz p=0.561703 | |
| 724-832, - strand, RNAz p=0.969388 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 265-386, gnl|bosTau2|chr10 (12265962-12265841) | |
| 265-386, gnl|Hg17|chr14 (23772523-23772644) | |
| 265-386, gnl|Mm7|chr14 (50540300-50540421) | |
| 469-645, gnl|bosTau2|chr10 (12263390-12263214) | |
| 469-645, gnl|canFam2|chr8 (7223485-7223683) | |
| 469-645, gnl|danRer3|chr7 (11546884-11547067) | |
| 469-645, gnl|dasNov1|scaffold_243328 (715-521) | |
| 469-645, gnl|echTel1|scaffold_316077 (99676-99873) | |
| 469-645, gnl|fr1|chrUn (223164196-223164000) | |
| 469-645, gnl|hg17|chr14 (23775002-23775200) | |
| 469-645, gnl|Hg17|chr14 (23775011-23775187) | |
| 469-645, gnl|loxAfr1|scaffold_5042 (6406-6599) | |
| 469-645, gnl|mm7|chr14 (50542898-50543099) | |
| 469-645, gnl|Mm7|chr14 (50542909-50543085) | |
| 469-645, gnl|monDom2|scaffold_12 (25537020-25536821) | |
| 469-645, gnl|oryCun1|scaffold_178102 (115666-115865) | |
| 469-645, gnl|panTro1|chr15 (22677045-22677243) | |
| 469-645, gnl|rheMac2|chr7 (87129815-87130013) | |
| 469-645, gnl|rn3|chr15 (33840523-33840725) | |
| 469-645, gnl|tetNig1|chrUn_random (21385869-21385677) | |
| 469-645, gnl|xenTro1|scaffold_53 (610688-610877) | |
| 723-834, gnl|bosTau2|chr23 (35947931-35947820) | |
| 723-834, gnl|canFam2|chr35 (18439728-18439845) | |
| 723-834, gnl|danRer3|chr19 (48883491-48883374) | |
| 723-834, gnl|dasNov1|scaffold_49736 (5770-5655) | |
| 723-834, gnl|echTel1|scaffold_316077 (100873-100988) | |
| 723-834, gnl|fr1|chrUn (115604804-115604921) | |
| 723-834, gnl|galGal2|chr2 (61293820-61293935) | |
| 723-834, gnl|hg17|chr6 (16386990-16387107) | |
| 723-834, gnl|Hg17|chr6 (16386990-16387101) | |
| 723-834, gnl|loxAfr1|scaffold_56628 (3123-3008) | |
| 723-834, gnl|mm7|chr13 (44982764-44982881) | |
| 723-834, gnl|Mm7|chr13 (44982764-44982875) | |
| 723-834, gnl|monDom2|scaffold_3 (105125602-105125718) | |
| 723-834, gnl|oryCun1|scaffold_113921 (1106-989) | |
| 723-834, gnl|panTro1|chr5 (16754069-16754186) | |
| 723-834, gnl|rheMac2|chr4 (16296407-16296524) | |
| 723-834, gnl|rn3|chr17 (25164983-25164866) | |
| 723-834, gnl|tetNig1|chr21 (1507900-1507783) | |
| 724-832, gnl|bosTau2|chr10 (12262271-12262163) | |
| 724-832, gnl|Hg17|chr14 (23776288-23776396) | |
| 724-832, gnl|Mm7|chr14 (50544277-50544385) | |
| 1035-1262, gnl|bosTau2|chr10 (12260838-12260610) | |
| 1035-1262, gnl|Hg17|chr14 (23777633-23777862) | |
| 1035-1262, gnl|Mm7|chr14 (50545574-50545800) | |
| 1273-1641, gnl|bosTau2|chr10 (12260577-12260214) | |
| 1273-1641, gnl|canFam2|chr8 (7226069-7226675) | |
| 1273-1641, gnl|dasNov1|scaffold_49736 (4078-3495) | |
| 1273-1641, gnl|echTel1|scaffold_316077 (102281-102870) | |
| 1273-1641, gnl|hg17|chr14 (23777830-23778477) | |
| 1273-1641, gnl|Hg17|chr14 (23777896-23778277) | |
| 1273-1641, gnl|mm7|chr14 (50545771-50546300) | |
| 1273-1641, gnl|Mm7|chr14 (50545837-50546146) | |
| 1273-1641, gnl|monDom2|scaffold_12 (25533943-25533298) | |
| 1273-1641, gnl|oryCun1|scaffold_178102 (118451-119071) | |
| 1273-1641, gnl|panTro1|chr15 (22679873-22680515) | |
| 1273-1641, gnl|rheMac2|chr7 (87132928-87133570) | |
| 1273-1641, gnl|rn3|chr15 (33843876-33844446) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 265-386, gnl|bosTau2|chr10 (12265962-12265841) | |
| 265-386, gnl|Hg17|chr14 (23772523-23772644) | |
| 265-386, gnl|Mm7|chr14 (50540300-50540421) | |
| 469-645, gnl|bosTau2|chr10 (12263390-12263214) | |
| 469-645, gnl|canFam2|chr8 (7223485-7223683) | |
| 469-645, gnl|danRer3|chr7 (11546884-11547067) | |
| 469-645, gnl|dasNov1|scaffold_243328 (715-521) | |
| 469-645, gnl|echTel1|scaffold_316077 (99676-99873) | |
| 469-645, gnl|fr1|chrUn (223164196-223164000) | |
| 469-645, gnl|hg17|chr14 (23775002-23775200) | |
| 469-645, gnl|Hg17|chr14 (23775011-23775187) | |
| 469-645, gnl|loxAfr1|scaffold_5042 (6406-6599) | |
| 469-645, gnl|mm7|chr14 (50542898-50543099) | |
| 469-645, gnl|Mm7|chr14 (50542909-50543085) | |
| 469-645, gnl|monDom2|scaffold_12 (25537020-25536821) | |
| 469-645, gnl|oryCun1|scaffold_178102 (115666-115865) | |
| 469-645, gnl|panTro1|chr15 (22677045-22677243) | |
| 469-645, gnl|rheMac2|chr7 (87129815-87130013) | |
| 469-645, gnl|rn3|chr15 (33840523-33840725) | |
| 469-645, gnl|tetNig1|chrUn_random (21385869-21385677) | |
| 469-645, gnl|xenTro1|scaffold_53 (610688-610877) | |
| 723-834, gnl|bosTau2|chr23 (35947931-35947820) | |
| 723-834, gnl|canFam2|chr35 (18439728-18439845) | |
| 723-834, gnl|danRer3|chr19 (48883491-48883374) | |
| 723-834, gnl|dasNov1|scaffold_49736 (5770-5655) | |
| 723-834, gnl|echTel1|scaffold_316077 (100873-100988) | |
| 723-834, gnl|fr1|chrUn (115604804-115604921) | |
| 723-834, gnl|galGal2|chr2 (61293820-61293935) | |
| 723-834, gnl|hg17|chr6 (16386990-16387107) | |
| 723-834, gnl|Hg17|chr6 (16386990-16387101) | |
| 723-834, gnl|loxAfr1|scaffold_56628 (3123-3008) | |
| 723-834, gnl|mm7|chr13 (44982764-44982881) | |
| 723-834, gnl|Mm7|chr13 (44982764-44982875) | |
| 723-834, gnl|monDom2|scaffold_3 (105125602-105125718) | |
| 723-834, gnl|oryCun1|scaffold_113921 (1106-989) | |
| 723-834, gnl|panTro1|chr5 (16754069-16754186) | |
| 723-834, gnl|rheMac2|chr4 (16296407-16296524) | |
| 723-834, gnl|rn3|chr17 (25164983-25164866) | |
| 723-834, gnl|tetNig1|chr21 (1507900-1507783) | |
| 724-832, gnl|bosTau2|chr10 (12262271-12262163) | |
| 724-832, gnl|Hg17|chr14 (23776288-23776396) | |
| 724-832, gnl|Mm7|chr14 (50544277-50544385) | |
| 1035-1262, gnl|bosTau2|chr10 (12260838-12260610) | |
| 1035-1262, gnl|Hg17|chr14 (23777633-23777862) | |
| 1035-1262, gnl|Mm7|chr14 (50545574-50545800) | |
| 1273-1641, gnl|bosTau2|chr10 (12260577-12260214) | |
| 1273-1641, gnl|canFam2|chr8 (7226069-7226675) | |
| 1273-1641, gnl|dasNov1|scaffold_49736 (4078-3495) | |
| 1273-1641, gnl|echTel1|scaffold_316077 (102281-102870) | |
| 1273-1641, gnl|hg17|chr14 (23777830-23778477) | |
| 1273-1641, gnl|Hg17|chr14 (23777896-23778277) | |
| 1273-1641, gnl|mm7|chr14 (50545771-50546300) | |
| 1273-1641, gnl|Mm7|chr14 (50545837-50546146) | |
| 1273-1641, gnl|monDom2|scaffold_12 (25533943-25533298) | |
| 1273-1641, gnl|oryCun1|scaffold_178102 (118451-119071) | |
| 1273-1641, gnl|panTro1|chr15 (22679873-22680515) | |
| 1273-1641, gnl|rheMac2|chr7 (87132928-87133570) | |
| 1273-1641, gnl|rn3|chr15 (33843876-33844446) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| cki (0.660939) | |
| sme (0.610874) | |
| cje (0.495704) | |
| pgl (0.473934) | |
| nms (0.427716) | |
| cbe (0.239234) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.660939) | |
| sme (0.610874) | |
| cje (0.495704) | |
| pgl (0.473934) | |
| nms (0.427716) | |
| cbe (0.239234) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |