Ss1.1-Lym2-sn73_H08.f.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCAGCTGTTGACTGCGCCCGCCGCAGATCTTTGAAGCATGAATCCTTCACTCCTCCTG GCTGCCTTTTGCTTGGGAATAGCCTCAGCTGCTCCAAGACATGATCACAGTTTAGATGCA GACTGGTACAAGTGGAAGGCAACACACAGGAAACTCTATGGCTTGAATGAAGAAGGAAGG CGGAGAGCCGTATGGGAGAAGAACATGAAAATGATTGAACGGCACAATTGGGAACACAGG CAAGGGAAACATAGCTTCACCATGGCCATGAATGCCTTTGGTGACATGACCAATGAAGAA TTCAGGAAGACGATGAATGGTTTTCAAAACCAGAAGCACAAGAAGGGAAAAGTATTCCTT GACGCTGGCTCTGCTTTGACCCCCCATTCTGTGGATTGGAGAGAGAAAGGCTATGTAACT GCTGTGAAGAATCAGGGTCACTGTGGTTCTTGTTGGGCTTTTAGTGCCACCGGCGCCCTC GAAGGACAGATGTTCCGGAAAACCAGCAAACTTATTTCACTGAGTGAGCAGAACCTGGTG GACTGCTCTTGGCCTGAGGGCAATGAGGGCTGCAATGGTGGCCTAATGGATAATGCCTTC CAGTACATTAAGGACAACGGAGGCCTGGACTCAGAGGAATCCTATCCATACTTTGGAAAG GATGGATCCTGCAAATACAAGCCCCAGAGTTCTGCTGCCAACGACACTGGTTACGTGGAT ATTCCAAAGCAGGAGAAAGCGCTTATGAAGGCCGTGGCAACTGTGGGGCCCATCTCTGTT GGTATAGATGCAAGCCATGAATCCTTCCAGTTTTACAGCACAGGCATTTATTTTGAACCA CAGTGCAGCAGCGAAGACCTGGATCATGGCGTTCTGGTGGTCGGCTATGGCGTTGAAGGA GCACACTCAAATAATAAGTATTGGCTTGTCAAGAACAGCTGGGGTAATACTTGGGGCATG GATGGCTACATAAAGATGACCAAAGATCAGAACAACCACTGTGGAATCGCCACCATGGCC AGTTACCCTGTGGTCTAAATCTCAAAGACTGGATTAAGAACAGAATAGCCCGAGGACAAA TTCTGTCTTCAAACCAACCAGACTCTATTGTGTGGGATCAAACACTTGAATCATTGAGGA TCCAAGTTGTGATTTGAATTCTGTGCCATTTTACACTGGTGAAATGTTACCACTTCTTTA ATTACTGTTGTAAATAGGTTTGTGTGATTGATGTGTCTCATAAATTTGTACTTTTCATGT TTTAAAAGGATGTATAAAGTTTTACCTTTTAAAATAAAACTTAATTTTAGGAGTTAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCAGCTGTTGACTGCGCCCGCCGCAGATCTTTGAAGCATGAATCCTTCACTCCTCCTG GCTGCCTTTTGCTTGGGAATAGCCTCAGCTGCTCCAAGACATGATCACAGTTTAGATGCA GACTGGTACAAGTGGAAGGCAACACACAGGAAACTCTATGGCTTGAATGAAGAAGGAAGG CGGAGAGCCGTATGGGAGAAGAACATGAAAATGATTGAACGGCACAATTGGGAACACAGG CAAGGGAAACATAGCTTCACCATGGCCATGAATGCCTTTGGTGACATGACCAATGAAGAA TTCAGGAAGACGATGAATGGTTTTCAAAACCAGAAGCACAAGAAGGGAAAAGTATTCCTT GACGCTGGCTCTGCTTTGACCCCCCATTCTGTGGATTGGAGAGAGAAAGGCTATGTAACT GCTGTGAAGAATCAGGGTCACTGTGGTTCTTGTTGGGCTTTTAGTGCCACCGGCGCCCTC GAAGGACAGATGTTCCGGAAAACCAGCAAACTTATTTCACTGAGTGAGCAGAACCTGGTG GACTGCTCTTGGCCTGAGGGCAATGAGGGCTGCAATGGTGGCCTAATGGATAATGCCTTC CAGTACATTAAGGACAACGGAGGCCTGGACTCAGAGGAATCCTATCCATACTTTGGAAAG GATGGATCCTGCAAATACAAGCCCCAGAGTTCTGCTGCCAACGACACTGGTTACGTGGAT ATTCCAAAGCAGGAGAAAGCGCTTATGAAGGCCGTGGCAACTGTGGGGCCCATCTCTGTT GGTATAGATGCAAGCCATGAATCCTTCCAGTTTTACAGCACAGGCATTTATTTTGAACCA CAGTGCAGCAGCGAAGACCTGGATCATGGCGTTCTGGTGGTCGGCTATGGCGTTGAAGGA GCACACTCAAATAATAAGTATTGGCTTGTCAAGAACAGCTGGGGTAATACTTGGGGCATG GATGGCTACATAAAGATGACCAAAGATCAGAACAACCACTGTGGAATCGCCACCATGGCC AGTTACCCTGTGGTCTAAATCTCAAAGACTGGATTAAGAACAGAATAGCCCGAGGACAAA TTCTGTCTTCAAACCAACCAGACTCTATTGTGTGGGATCAAACACTTGAATCATTGAGGA TCCAAGTTGTGATTTGAATTCTGTGCCATTTTACACTGGTGAAATGTTACCACTTCTTTA ATTACTGTTGTAAATAGGTTTGTGTGATTGATGTGTCTCATAAATTTGTACTTTTCATGT TTTAAAAGGATGTATAAAGTTTTACCTTTTAAAATAAAACTTAATTTTAGGAGTTAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 936-1157, + strand, RNAz p=0.96389 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 936-1157, + strand, RNAz p=0.96389 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 162-288, gnl|bosTau2|chr8 (47002571-47002697) | |
| 162-288, gnl|canFam2|chr1 (72996207-72996061) | |
| 162-288, gnl|danRer3|chr5 (43710844-43710699) | |
| 162-288, gnl|dasNov1|scaffold_18578 (6824-6699) | |
| 162-288, gnl|echTel1|scaffold_12356 (2261-2131) | |
| 162-288, gnl|fr1|chrUn (64254945-64254797) | |
| 162-288, gnl|galGal2|chrZ_random (13965663-13965515) | |
| 162-288, gnl|hg17|chr10 (46210648-46210791) | |
| 162-288, gnl|Hg17|chr9 (87689045-87689168) | |
| 162-288, gnl|loxAfr1|scaffold_22413 (21103-20971) | |
| 162-288, gnl|mm7|chr13 (59963025-59963169) | |
| 162-288, gnl|Mm7|chr13 (62196536-62196410) | |
| 162-288, gnl|monDom2|scaffold_83 (2400345-2400491) | |
| 162-288, gnl|oryCun1|scaffold_184365 (3480-3626) | |
| 162-288, gnl|panTro1|chr8 (90817849-90817995) | |
| 162-288, gnl|rheMac2|chr15 (96309666-96309522) | |
| 162-288, gnl|rn3|chr17 (9514403-9514269) | |
| 162-288, gnl|tetNig1|chr12 (4059973-4060107) | |
| 162-288, gnl|xenTro1|scaffold_528 (559994-559851) | |
| 432-661, gnl|bosTau2|chr8 (47003052-47003281) | |
| 432-661, gnl|canFam2|chr1 (75274719-75274464) | |
| 432-661, gnl|danRer3|chr12 (9848133-9848388) | |
| 432-661, gnl|dasNov1|scaffold_18578 (7211-7463) | |
| 432-661, gnl|echTel1|scaffold_163053 (2796-3053) | |
| 432-661, gnl|fr1|chrUn (64255465-64255719) | |
| 432-661, gnl|hg17|chr9 (87617868-87618121) | |
| 432-661, gnl|Hg17|chr9 (87689628-87689853) | |
| 432-661, gnl|loxAfr1|scaffold_22413 (21508-21764) | |
| 432-661, gnl|mm7|chr13 (59909853-59909599) | |
| 432-661, gnl|Mm7|chr13 (62195390-62195161) | |
| 432-661, gnl|monDom2|scaffold_83 (2399939-2399688) | |
| 432-661, gnl|oryCun1|scaffold_184365 (3125-2884) | |
| 432-661, gnl|panTro1|chr11 (71663194-71663447) | |
| 432-661, gnl|rheMac2|chr15 (96310060-96310314) | |
| 432-661, gnl|rn3|chr17 (9577392-9577646) | |
| 432-661, gnl|tetNig1|chrUn_random (76998395-76998160) | |
| 432-661, gnl|xenTro1|scaffold_528 (561997-562256) | |
| 669-833, gnl|bosTau2|chr8 (47003970-47004134) | |
| 669-833, gnl|Hg17|chr9 (87690339-87690500) | |
| 669-833, gnl|Mm7|chr13 (62194926-62194770) | |
| 936-1306, gnl|bosTau2|chr8 (47005524-47005915) | |
| 936-1306, gnl|Hg17|chr9 (87691688-87692058) | |
| 936-1306, gnl|Mm7|chr13 (62192497-62192103) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-288, gnl|bosTau2|chr8 (47002571-47002697) | |
| 162-288, gnl|canFam2|chr1 (72996207-72996061) | |
| 162-288, gnl|danRer3|chr5 (43710844-43710699) | |
| 162-288, gnl|dasNov1|scaffold_18578 (6824-6699) | |
| 162-288, gnl|echTel1|scaffold_12356 (2261-2131) | |
| 162-288, gnl|fr1|chrUn (64254945-64254797) | |
| 162-288, gnl|galGal2|chrZ_random (13965663-13965515) | |
| 162-288, gnl|hg17|chr10 (46210648-46210791) | |
| 162-288, gnl|Hg17|chr9 (87689045-87689168) | |
| 162-288, gnl|loxAfr1|scaffold_22413 (21103-20971) | |
| 162-288, gnl|mm7|chr13 (59963025-59963169) | |
| 162-288, gnl|Mm7|chr13 (62196536-62196410) | |
| 162-288, gnl|monDom2|scaffold_83 (2400345-2400491) | |
| 162-288, gnl|oryCun1|scaffold_184365 (3480-3626) | |
| 162-288, gnl|panTro1|chr8 (90817849-90817995) | |
| 162-288, gnl|rheMac2|chr15 (96309666-96309522) | |
| 162-288, gnl|rn3|chr17 (9514403-9514269) | |
| 162-288, gnl|tetNig1|chr12 (4059973-4060107) | |
| 162-288, gnl|xenTro1|scaffold_528 (559994-559851) | |
| 432-661, gnl|bosTau2|chr8 (47003052-47003281) | |
| 432-661, gnl|canFam2|chr1 (75274719-75274464) | |
| 432-661, gnl|danRer3|chr12 (9848133-9848388) | |
| 432-661, gnl|dasNov1|scaffold_18578 (7211-7463) | |
| 432-661, gnl|echTel1|scaffold_163053 (2796-3053) | |
| 432-661, gnl|fr1|chrUn (64255465-64255719) | |
| 432-661, gnl|hg17|chr9 (87617868-87618121) | |
| 432-661, gnl|Hg17|chr9 (87689628-87689853) | |
| 432-661, gnl|loxAfr1|scaffold_22413 (21508-21764) | |
| 432-661, gnl|mm7|chr13 (59909853-59909599) | |
| 432-661, gnl|Mm7|chr13 (62195390-62195161) | |
| 432-661, gnl|monDom2|scaffold_83 (2399939-2399688) | |
| 432-661, gnl|oryCun1|scaffold_184365 (3125-2884) | |
| 432-661, gnl|panTro1|chr11 (71663194-71663447) | |
| 432-661, gnl|rheMac2|chr15 (96310060-96310314) | |
| 432-661, gnl|rn3|chr17 (9577392-9577646) | |
| 432-661, gnl|tetNig1|chrUn_random (76998395-76998160) | |
| 432-661, gnl|xenTro1|scaffold_528 (561997-562256) | |
| 669-833, gnl|bosTau2|chr8 (47003970-47004134) | |
| 669-833, gnl|Hg17|chr9 (87690339-87690500) | |
| 669-833, gnl|Mm7|chr13 (62194926-62194770) | |
| 936-1306, gnl|bosTau2|chr8 (47005524-47005915) | |
| 936-1306, gnl|Hg17|chr9 (87691688-87692058) | |
| 936-1306, gnl|Mm7|chr13 (62192497-62192103) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cje (0.495704) | |
| clu (0.478583) | |
| ski (0.440205) | |
| ova (0.387397) | |
| cly (0.361925) | |
| cli (0.305623) | |
| liv (0.292569) | |
| cty (0.20816) | |
| eje (0.197668) | |
| nje (0.16592) | |
| csp (0.161186) | |
| fat (0.147427) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.495704) | |
| clu (0.478583) | |
| ski (0.440205) | |
| ova (0.387397) | |
| cly (0.361925) | |
| cli (0.305623) | |
| liv (0.292569) | |
| cty (0.20816) | |
| eje (0.197668) | |
| nje (0.16592) | |
| csp (0.161186) | |
| fat (0.147427) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| jca (0.11396) | |
| jej (0.0989218) |