Ss1.1-MPL-MPL384_11_M22.5
|
TCAACCACAGTGGTTTCTCCCCTTTTGACTAATAGTCCAGGCTCCTCTGTCAACCGACGA
AGCCCAGTCTCATCTAGTAAGGGCAAAGGAAAAGTGGACAAAATCGGCCAGATTTTGCTG
ACGAAAGCTTGTAAAAAAGTTACAGGTTCTCTTGAGAAAGGGGAAGAACAATATGGTGCA
GATGGAGAGACTGAAAGCCAAGGGCTAGAGACTGCAGCTCCAGGGCTCATGGGAACAGAG
CAGTTATCCACAGAGCTGGACAGTAAAACCCCAACTCCCCCAGCACCCACTCTCCTAAAA
GTGACCTCTAGCCCTGTGGGCCCGGGCTCCGCCTCAGCAGGACCCAGCTTACCTGGCAGT
ACTCTCCCCACCAATGTACGCTCAATAGTAACCACTCTGGTACCCTCTGAGCTCATCTCT
GCGGCGCCGACCACAAAAAGCAATCATGTTGGCATAACATCTGAGCCACTTGCAGGTGGC
CTAGTGGAGGAGAAGGTGGGATCTCATCCAGAGCTTCTGTCCAGCATAGCCCCTTCACAG
AATTTAATCCCAAAGGAAACTCCAGCCACAGCACTGCAGGGGTCTGTTGCCAGACCAGAA
CTCGAAGTAAATGCTACCATGGTCTCTGGACAAAGCAGTGAGCCCAAAGAGATAATTGAA
AAGTCCAAAACTCCAAGCCGAAGAAACTCCCGGACTGAAGAGCCAACTGTGGCTTCTGAA
AGTGTGGAAAATGGACATCGGAAGCGATCTTCTCGGCCTGCTTCAGCCTCCAGCTCTACT
AAAGACATAACCAGTGTGGTGCAATCCAAGCGGAGAAAATCCAAGTAAACAAGCTGGACG
ACGACTTGATATTTGTAAATGTGTGTGAATTTTACAAAAAGCAATTTTGAGCTGTGACTT
TTTAAAATCCATTTCTGTACAGTTAGTCATTTTAATAATGTGGTCCTTTTCCTAGTCCCT
GCAACCTGTTTCGTAAAGTGCAATGGAGAAAGCAGAATTGTTGAACCCTTTTGATGTTGC
AAGATGAAGTTCAAGGTTTCTAAAATGTTGCCATGTATTGAGAGGAGCTAATACGATTAT
GTTATTAGTTTTCACATTTCCTAAGCAGCCTAGAGTACAGGGTGAGCATTTTTAGATCTT
CTAATGATATATTGTGCTGTGGAAGTACTGTGTGTGGATAGCAGTAGTGGGGCAAAAAGA
ATCTTCTCATTTGGAAATGTTGTAAATAATTTTATTATATAGTGTTTTGGATGTATTTGT
TGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTATACAATGTGAAATATTGAA
TGTGCTAAATAAATGTCTTTGTCCTAGAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCAACCACAGTGGTTTCTCCCCTTTTGACTAATAGTCCAGGCTCCTCTGTCAACCGACGA
AGCCCAGTCTCATCTAGTAAGGGCAAAGGAAAAGTGGACAAAATCGGCCAGATTTTGCTG
ACGAAAGCTTGTAAAAAAGTTACAGGTTCTCTTGAGAAAGGGGAAGAACAATATGGTGCA
GATGGAGAGACTGAAAGCCAAGGGCTAGAGACTGCAGCTCCAGGGCTCATGGGAACAGAG
CAGTTATCCACAGAGCTGGACAGTAAAACCCCAACTCCCCCAGCACCCACTCTCCTAAAA
GTGACCTCTAGCCCTGTGGGCCCGGGCTCCGCCTCAGCAGGACCCAGCTTACCTGGCAGT
ACTCTCCCCACCAATGTACGCTCAATAGTAACCACTCTGGTACCCTCTGAGCTCATCTCT
GCGGCGCCGACCACAAAAAGCAATCATGTTGGCATAACATCTGAGCCACTTGCAGGTGGC
CTAGTGGAGGAGAAGGTGGGATCTCATCCAGAGCTTCTGTCCAGCATAGCCCCTTCACAG
AATTTAATCCCAAAGGAAACTCCAGCCACAGCACTGCAGGGGTCTGTTGCCAGACCAGAA
CTCGAAGTAAATGCTACCATGGTCTCTGGACAAAGCAGTGAGCCCAAAGAGATAATTGAA
AAGTCCAAAACTCCAAGCCGAAGAAACTCCCGGACTGAAGAGCCAACTGTGGCTTCTGAA
AGTGTGGAAAATGGACATCGGAAGCGATCTTCTCGGCCTGCTTCAGCCTCCAGCTCTACT
AAAGACATAACCAGTGTGGTGCAATCCAAGCGGAGAAAATCCAAGTAAACAAGCTGGACG
ACGACTTGATATTTGTAAATGTGTGTGAATTTTACAAAAAGCAATTTTGAGCTGTGACTT
TTTAAAATCCATTTCTGTACAGTTAGTCATTTTAATAATGTGGTCCTTTTCCTAGTCCCT
GCAACCTGTTTCGTAAAGTGCAATGGAGAAAGCAGAATTGTTGAACCCTTTTGATGTTGC
AAGATGAAGTTCAAGGTTTCTAAAATGTTGCCATGTATTGAGAGGAGCTAATACGATTAT
GTTATTAGTTTTCACATTTCCTAAGCAGCCTAGAGTACAGGGTGAGCATTTTTAGATCTT
CTAATGATATATTGTGCTGTGGAAGTACTGTGTGTGGATAGCAGTAGTGGGGCAAAAAGA
ATCTTCTCATTTGGAAATGTTGTAAATAATTTTATTATATAGTGTTTTGGATGTATTTGT
TGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTATACAATGTGAAATATTGAA
TGTGCTAAATAAATGTCTTTGTCCTAGAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
208-335, + strand, RNAmicro p=0.989446 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
208-335, + strand, RNAmicro p=0.989446 |
|
2-529, gnl|bosTau2|chr13 (46815731-46816258) |
|
2-529, gnl|Hg17|chr20 (32792355-32791828) |
|
2-529, gnl|Mm7|chr2 (155146860-155146333) |
| |
|
634-784, gnl|bosTau2|chr13 (46825351-46825501) |
|
634-784, gnl|canFam2|chr24 (26782704-26782909) |
|
634-784, gnl|danRer3|chr11 (11662729-11662535) |
|
634-784, gnl|echTel1|scaffold_214077 (6817-6610) |
|
634-784, gnl|galGal2|chr20 (449597-449397) |
|
634-784, gnl|hg17|chr20 (32778709-32778914) |
|
634-784, gnl|Hg17|chr20 (32778874-32778724) |
|
634-784, gnl|loxAfr1|scaffold_73104 (34091-34281) |
|
634-784, gnl|mm7|chr2 (155136563-155136772) |
|
634-784, gnl|Mm7|chr2 (155136731-155136578) |
|
634-784, gnl|monDom2|scaffold_6 (12302190-12301981) |
|
634-784, gnl|oryCun1|scaffold_187271 (116377-116577) |
|
634-784, gnl|panTro1|chr21 (34786181-34786386) |
|
634-784, gnl|rheMac2|chr10 (29840389-29840188) |
|
634-784, gnl|rn3|chr3 (145796769-145796975) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-529, gnl|bosTau2|chr13 (46815731-46816258) |
|
2-529, gnl|Hg17|chr20 (32792355-32791828) |
|
2-529, gnl|Mm7|chr2 (155146860-155146333) |
| |
|
634-784, gnl|bosTau2|chr13 (46825351-46825501) |
|
634-784, gnl|canFam2|chr24 (26782704-26782909) |
|
634-784, gnl|danRer3|chr11 (11662729-11662535) |
|
634-784, gnl|echTel1|scaffold_214077 (6817-6610) |
|
634-784, gnl|galGal2|chr20 (449597-449397) |
|
634-784, gnl|hg17|chr20 (32778709-32778914) |
|
634-784, gnl|Hg17|chr20 (32778874-32778724) |
|
634-784, gnl|loxAfr1|scaffold_73104 (34091-34281) |
|
634-784, gnl|mm7|chr2 (155136563-155136772) |
|
634-784, gnl|Mm7|chr2 (155136731-155136578) |
|
634-784, gnl|monDom2|scaffold_6 (12302190-12301981) |
|
634-784, gnl|oryCun1|scaffold_187271 (116377-116577) |
|
634-784, gnl|panTro1|chr21 (34786181-34786386) |
|
634-784, gnl|rheMac2|chr10 (29840389-29840188) |
|
634-784, gnl|rn3|chr3 (145796769-145796975) |
|
pro (0.512033) |
|
vin (0.332557) |
|
tbr (0.308356) |
|
ski (0.29347) |
|
cte (0.29274) |
|
lyg (0.266205) |
|
ret (0.257467) |
|
tes (0.207814) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
ill (0.175593) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ova (0.129132) |
|
thg (0.126791) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
pro (0.512033) |
|
vin (0.332557) |
|
tbr (0.308356) |
|
ski (0.29347) |
|
cte (0.29274) |
|
lyg (0.266205) |
|
ret (0.257467) |
|
tes (0.207814) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
ill (0.175593) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
eli (0.151814) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ova (0.129132) |
|
thg (0.126791) |
|
pgl (0.118483) |
|
cty (0.10408) |
