Ss1.1-MPL-MPL384_12_M04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCATGTACAAGTACCGCAACCGCGACGAGGGCTCCTACCAGGTGGACCAGAGCCGGAA CTACATCAGTAACTCGGCCCAGAGCAACGGGGCCGTGGTGAAAGAGAAGGCGCCGGCGGC CCCCAAGACGCCCAGCAAGGCCAAGAAGAACAAAGACAAGGAGTATTACGTCTGAGCCTC CCCGGCACCGCGCCCCACTGCCAGCTGCCCCTCCCGGGAGGGCCCGGGAGGAGGGTGCGG CCTTCTCCTTGCCGGGCCCTGGGGACCTGCTCCCCGGCTGCCTCAGACTTCTCTCACGAA GAGGAAACGCAAAAAAAAAAAAAAAAAAAAAAAAAACCGGACGCGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCATGTACAAGTACCGCAACCGCGACGAGGGCTCCTACCAGGTGGACCAGAGCCGGAA CTACATCAGTAACTCGGCCCAGAGCAACGGGGCCGTGGTGAAAGAGAAGGCGCCGGCGGC CCCCAAGACGCCCAGCAAGGCCAAGAAGAACAAAGACAAGGAGTATTACGTCTGAGCCTC CCCGGCACCGCGCCCCACTGCCAGCTGCCCCTCCCGGGAGGGCCCGGGAGGAGGGTGCGG CCTTCTCCTTGCCGGGCCCTGGGGACCTGCTCCCCGGCTGCCTCAGACTTCTCTCACGAA GAGGAAACGCAAAAAAAAAAAAAAAAAAAAAAAAAACCGGACGCGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 200-317, - strand, RNAz p=0.939654 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 200-317, - strand, RNAz p=0.939654 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-346, gnl|bosTau2|chr29 (33745806-33745462) | |
| 1-346, gnl|Hg17|chr11 (64131418-64131079) | |
| 1-346, gnl|Mm7|chr19 (6427349-6427695) | |
| 2-195, gnl|bosTau2|chr10 (63798752-63798941) | |
| 2-195, gnl|canFam2|chr8 (55420366-55420859) | |
| 2-195, gnl|danRer3|chr17 (12064784-12064325) | |
| 2-195, gnl|dasNov1|scaffold_283 (178563-179025) | |
| 2-195, gnl|echTel1|scaffold_311411 (333450-333911) | |
| 2-195, gnl|fr1|chrUn (263919103-263919588) | |
| 2-195, gnl|galGal2|chr5 (37285961-37286421) | |
| 2-195, gnl|hg17|chr14 (79397604-79398065) | |
| 2-195, gnl|Hg17|chr14 (79397890-79398076) | |
| 2-195, gnl|loxAfr1|scaffold_7268 (71720-72183) | |
| 2-195, gnl|mm7|chr12 (87812187-87812648) | |
| 2-195, gnl|Mm7|chr12 (87812473-87812660) | |
| 2-195, gnl|monDom2|scaffold_8 (52822857-52822396) | |
| 2-195, gnl|oryCun1|scaffold_208883 (11482-11021) | |
| 2-195, gnl|panTro1|chr15 (79479468-79479929) | |
| 2-195, gnl|rheMac2|chr7 (143072402-143072863) | |
| 2-195, gnl|rn3|chr6 (113908003-113908464) | |
| 2-195, gnl|tetNig1|chr14 (8452893-8453378) | |
| 2-195, gnl|xenTro1|scaffold_3716 (17018-16561) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-346, gnl|bosTau2|chr29 (33745806-33745462) | |
| 1-346, gnl|Hg17|chr11 (64131418-64131079) | |
| 1-346, gnl|Mm7|chr19 (6427349-6427695) | |
| 2-195, gnl|bosTau2|chr10 (63798752-63798941) | |
| 2-195, gnl|canFam2|chr8 (55420366-55420859) | |
| 2-195, gnl|danRer3|chr17 (12064784-12064325) | |
| 2-195, gnl|dasNov1|scaffold_283 (178563-179025) | |
| 2-195, gnl|echTel1|scaffold_311411 (333450-333911) | |
| 2-195, gnl|fr1|chrUn (263919103-263919588) | |
| 2-195, gnl|galGal2|chr5 (37285961-37286421) | |
| 2-195, gnl|hg17|chr14 (79397604-79398065) | |
| 2-195, gnl|Hg17|chr14 (79397890-79398076) | |
| 2-195, gnl|loxAfr1|scaffold_7268 (71720-72183) | |
| 2-195, gnl|mm7|chr12 (87812187-87812648) | |
| 2-195, gnl|Mm7|chr12 (87812473-87812660) | |
| 2-195, gnl|monDom2|scaffold_8 (52822857-52822396) | |
| 2-195, gnl|oryCun1|scaffold_208883 (11482-11021) | |
| 2-195, gnl|panTro1|chr15 (79479468-79479929) | |
| 2-195, gnl|rheMac2|chr7 (143072402-143072863) | |
| 2-195, gnl|rn3|chr6 (113908003-113908464) | |
| 2-195, gnl|tetNig1|chr14 (8452893-8453378) | |
| 2-195, gnl|xenTro1|scaffold_3716 (17018-16561) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| hyp (0.142837) | |
| ebs (0.118301) |