Non-Coding RNA Search

Ss1.1-MPL-MPL384_1_K08.5

Sequence:


               
               GCTTATCCATGCAGCTGCTGGGTTTTTGGCCCTGACACCCCTCCCTAGCAACATCCGACT
TTGAGGAGAGGCTGCAGCCGTAGGACCCTACTGCCCCTTCAGGAAGGGCTGTGGTCAGGG
GCATGTCCCTCCCCTTCTCCCCTCCACCTCTTACTGCTGTTCTCCCTTCTCTCTGTCTTC
CATGGAAACCCCAGGGAGATAACCTAGCTTCCTGGGGTTGATGGAATAGAGGTTGAAGTG
GCCATAATGGTTTGTTGGGGGGTGAGGGGGAAAATCTCACAGGGACCAGAATGTTTTTTT
GTTGTCGTTGTTTTCTTTTTTGTACCAAAGCCAACTGCACGTGTTTTATATTTTTAAGAG
AAGATTGTAGGCAATTAGAAATTGCAGCCTTCTAGCTCTACATCTCTGAAGAACTTGAGG
GATGGGGGGAACGGTGACTTCGCCCCTCATCTGTAGTAATGGGGGACCCATTCTGACCTC
TTCTCCAGCCATTAGGAAATAAAAGCTCTAGGGTGAGTTGGGAAATCTCTGCAAACCCTG
ACCTCATCCCCCACCTCAGCAACCATGACCTGAAACCTCAGTGTGAGTGGGGGGGGATTT
TTCAACGGACCCCCCACCCCCGCAATGCCCGCCAGCCCTCAGCCAGTTTTTTGCCGATTT
TGATTGATTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTATCCATGCAGCTGCTGGGTTTTTGGCCCTGACACCCCTCCCTAGCAACATCCGACT
TTGAGGAGAGGCTGCAGCCGTAGGACCCTACTGCCCCTTCAGGAAGGGCTGTGGTCAGGG
GCATGTCCCTCCCCTTCTCCCCTCCACCTCTTACTGCTGTTCTCCCTTCTCTCTGTCTTC
CATGGAAACCCCAGGGAGATAACCTAGCTTCCTGGGGTTGATGGAATAGAGGTTGAAGTG
GCCATAATGGTTTGTTGGGGGGTGAGGGGGAAAATCTCACAGGGACCAGAATGTTTTTTT
GTTGTCGTTGTTTTCTTTTTTGTACCAAAGCCAACTGCACGTGTTTTATATTTTTAAGAG
AAGATTGTAGGCAATTAGAAATTGCAGCCTTCTAGCTCTACATCTCTGAAGAACTTGAGG
GATGGGGGGAACGGTGACTTCGCCCCTCATCTGTAGTAATGGGGGACCCATTCTGACCTC
TTCTCCAGCCATTAGGAAATAAAAGCTCTAGGGTGAGTTGGGAAATCTCTGCAAACCCTG
ACCTCATCCCCCACCTCAGCAACCATGACCTGAAACCTCAGTGTGAGTGGGGGGGGATTT
TTCAACGGACCCCCCACCCCCGCAATGCCCGCCAGCCCTCAGCCAGTTTTTTGCCGATTT
TGATTGATTGTA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-274, - strand, RNAz p=0.999347
               

               
               141-403, - strand, RNAz p=0.988635
               

               
               510-622, - strand, RNAz p=0.595707

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-274, - strand, RNAz p=0.999347
               

               
               141-403, - strand, RNAz p=0.988635
               

               
               510-622, - strand, RNAz p=0.595707

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               146-247, + strand, RNAmicro p=1
               

               
               143-273, - strand, RNAmicro p=0.999988

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               146-247, + strand, RNAmicro p=1
               

               
               143-273, - strand, RNAmicro p=0.999988

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC020567, -
               

               
               5' of BC020567, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC020567, -
               

               
               5' of BC020567, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-672, gnl|bosTau2|chr3 (10658985-10659657)
               

               
               1-672, gnl|canFam2|chr7 (44822604-44821500)
               

               
               1-672, gnl|dasNov1|scaffold_13238 (6498-7598)
               

               
               1-672, gnl|echTel1|scaffold_283020 (14088-12975)
               

               
               1-672, gnl|hg17|chr1 (152729628-152730742)
               

               
               1-672, gnl|Hg17|chr1 (152730429-152729756)
               

               
               1-672, gnl|loxAfr1|scaffold_18843 (27071-28193)
               

               
               1-672, gnl|mm7|chr3 (88761781-88760732)
               

               
               1-672, gnl|Mm7|chr3 (88761012-88761601)
               

               
               1-672, gnl|monDom2|scaffold_59 (1587392-1586271)
               

               
               1-672, gnl|panTro1|chr1 (134664372-134665486)
               

               
               1-672, gnl|rheMac2|chr1 (134525938-134527049)
               

               
               1-672, gnl|rn3|chr2 (180725694-180724679)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr3 (10658985-10659657)
               

               
               1-672, gnl|canFam2|chr7 (44822604-44821500)
               

               
               1-672, gnl|dasNov1|scaffold_13238 (6498-7598)
               

               
               1-672, gnl|echTel1|scaffold_283020 (14088-12975)
               

               
               1-672, gnl|hg17|chr1 (152729628-152730742)
               

               
               1-672, gnl|Hg17|chr1 (152730429-152729756)
               

               
               1-672, gnl|loxAfr1|scaffold_18843 (27071-28193)
               

               
               1-672, gnl|mm7|chr3 (88761781-88760732)
               

               
               1-672, gnl|Mm7|chr3 (88761012-88761601)
               

               
               1-672, gnl|monDom2|scaffold_59 (1587392-1586271)
               

               
               1-672, gnl|panTro1|chr1 (134664372-134665486)
               

               
               1-672, gnl|rheMac2|chr1 (134525938-134527049)
               

               
               1-672, gnl|rn3|chr2 (180725694-180724679)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cst (0.420109)
               

               
               fce (0.271592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.420109)
               

               
               fce (0.271592)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	1-274, - strand, RNAz p=0.999347
	141-403, - strand, RNAz p=0.988635
	510-622, - strand, RNAz p=0.595707

	146-247, + strand, RNAmicro p=1
	143-273, - strand, RNAmicro p=0.999988

	1-672, gnl\|bosTau2\|chr3 (10658985-10659657)
	1-672, gnl\|canFam2\|chr7 (44822604-44821500)
	1-672, gnl\|dasNov1\|scaffold_13238 (6498-7598)
	1-672, gnl\|echTel1\|scaffold_283020 (14088-12975)
	1-672, gnl\|hg17\|chr1 (152729628-152730742)
	1-672, gnl\|Hg17\|chr1 (152730429-152729756)
	1-672, gnl\|loxAfr1\|scaffold_18843 (27071-28193)
	1-672, gnl\|mm7\|chr3 (88761781-88760732)
	1-672, gnl\|Mm7\|chr3 (88761012-88761601)
	1-672, gnl\|monDom2\|scaffold_59 (1587392-1586271)
	1-672, gnl\|panTro1\|chr1 (134664372-134665486)
	1-672, gnl\|rheMac2\|chr1 (134525938-134527049)
	1-672, gnl\|rn3\|chr2 (180725694-180724679)

	cst (0.420109)
	fce (0.271592)
	cje (0.165235)
	csp (0.161186)
	hyp (0.142837)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	ecc (0.115035)