Non-Coding RNA Search

Ss1.1-MPL-MPL384_2_H03.5

Sequence:


               
               TGGGCTTCGAGAAGATCTTCATGTACCTGCGTGACAGCCAGTGCTCAGGCTTCGCCGAGA
GGGGCAACCGCGACTGGATATCCGTGGTGACCCCGACCAGGGACGGCCCCTGTGGGACGG
TGATGACGAGGAATGAAACCCATGCCACCTACAGCAACACTCTCTACCTGGCAGATGAGA
TCATCATCCGGGACCTCAACATCAAAATCAACTTTGCCTGCTCCTATCCCCTGGACATGA
AAGTCAGCCTGAAGACCTCCCTGCAGCCCATGGTCAGTGCCCTAAACATCAGCGTGGGGG
GGACCGGGATGTTCACGGTGCGGATGGCGCTATTCCAGAGCCCCACCTACACGCAGCCCT
ACCAGGGCTCCTCCGTGACCCTGTCCACCGAGGCCTTTCTCTTCGTGGGGACCATGCTGG
ATGGGGGCGACTTGTCCCGGTTTGTGCTGCTGATGACCAACTGCTATGCCACGCCCAGCA
GCAGTGCCACAGACCCCCTGAAGTACTTCATCATCCAGGACAGATGTCCACGCTCCCAGG
ACCCAACCATCCAGGTGGAGGAGAATGGAGAGTCCCCTCAAGGCCGGTTTTCCGTCCAGA
TGTTCCGTTTTGCTGGCAACTACGACCTGGTCTACCTGCACTGTGAAGTCTATCTCTGTG
ACAGCGTGAATGAGAAATGCAAGCCTACCTGCTCCGGGACCAGATTCCGCAGTGGGGGCG
CCCTAGACCAAAGCCGTGTCCTGAACTTGGGTCCCATCACACGGAAAGGGGGCCAGGCTG
CAGTCTCGAGGGCCGCTTCCAGCAGCTTGGGATTCCTGAAGGTCTGGCTGCCTCTGCTTC
TGTCGGCCACCTTGACCCTGATGTCGCAGTGATCGGCAGCCCGAAATGCTGTGCTCTCTG
GCTCCCGGCTCACTTCCCACTGACTATCGAGGTGATGCCGTCTAGCCACAGGAAGGGGAG
TGCACGTTTCAGTCGCTCTGCTCCTATTTTCTCCCCTTTAATCCTCATTGTATATATAAA
AAAAAATCCTGTGCCTTTAAATGCTGCCGTCTCTCAAAATGGAACTTGGATGGGTCTGCA
CATGAAGCCCCTATCTCATTAAAGCGTGTTGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCTTCGAGAAGATCTTCATGTACCTGCGTGACAGCCAGTGCTCAGGCTTCGCCGAGA
GGGGCAACCGCGACTGGATATCCGTGGTGACCCCGACCAGGGACGGCCCCTGTGGGACGG
TGATGACGAGGAATGAAACCCATGCCACCTACAGCAACACTCTCTACCTGGCAGATGAGA
TCATCATCCGGGACCTCAACATCAAAATCAACTTTGCCTGCTCCTATCCCCTGGACATGA
AAGTCAGCCTGAAGACCTCCCTGCAGCCCATGGTCAGTGCCCTAAACATCAGCGTGGGGG
GGACCGGGATGTTCACGGTGCGGATGGCGCTATTCCAGAGCCCCACCTACACGCAGCCCT
ACCAGGGCTCCTCCGTGACCCTGTCCACCGAGGCCTTTCTCTTCGTGGGGACCATGCTGG
ATGGGGGCGACTTGTCCCGGTTTGTGCTGCTGATGACCAACTGCTATGCCACGCCCAGCA
GCAGTGCCACAGACCCCCTGAAGTACTTCATCATCCAGGACAGATGTCCACGCTCCCAGG
ACCCAACCATCCAGGTGGAGGAGAATGGAGAGTCCCCTCAAGGCCGGTTTTCCGTCCAGA
TGTTCCGTTTTGCTGGCAACTACGACCTGGTCTACCTGCACTGTGAAGTCTATCTCTGTG
ACAGCGTGAATGAGAAATGCAAGCCTACCTGCTCCGGGACCAGATTCCGCAGTGGGGGCG
CCCTAGACCAAAGCCGTGTCCTGAACTTGGGTCCCATCACACGGAAAGGGGGCCAGGCTG
CAGTCTCGAGGGCCGCTTCCAGCAGCTTGGGATTCCTGAAGGTCTGGCTGCCTCTGCTTC
TGTCGGCCACCTTGACCCTGATGTCGCAGTGATCGGCAGCCCGAAATGCTGTGCTCTCTG
GCTCCCGGCTCACTTCCCACTGACTATCGAGGTGATGCCGTCTAGCCACAGGAAGGGGAG
TGCACGTTTCAGTCGCTCTGCTCCTATTTTCTCCCCTTTAATCCTCATTGTATATATAAA
AAAAAATCCTGTGCCTTTAAATGCTGCCGTCTCTCAAAATGGAACTTGGATGGGTCTGCA
CATGAAGCCCCTATCTCATTAAAGCGTGTTGCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q64172_9MURI

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q64172_9MURI

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               11-128, + strand, RNAz p=0.530168

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-128, + strand, RNAz p=0.530168

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-128, gnl|bosTau2|chr25 (15856743-15856616)
               

               
               1-128, gnl|canFam2|chr6 (28025089-28024832)
               

               
               1-128, gnl|dasNov1|scaffold_2924 (41775-42024)
               

               
               1-128, gnl|echTel1|scaffold_316841 (23784-24040)
               

               
               1-128, gnl|hg17|chr16 (20264925-20265178)
               

               
               1-128, gnl|Hg17|chr16 (20265076-20264949)
               

               
               1-128, gnl|loxAfr1|scaffold_12784 (59236-58979)
               

               
               1-128, gnl|mm7|chr7 (115394584-115394842)
               

               
               1-128, gnl|Mm7|chr7 (115394735-115394608)
               

               
               1-128, gnl|monDom2|scaffold_19 (40738322-40738561)
               

               
               1-128, gnl|oryCun1|scaffold_193299 (173736-174002)
               

               
               1-128, gnl|panTro1|chr18 (20732194-20732447)
               

               
               1-128, gnl|rheMac2|chr20 (19342001-19342254)
               

               
               1-128, gnl|rn3|chr1 (177878090-177878348)
               

               
               1-128, gnl|xenTro1|scaffold_6 (3653968-3653751)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr25 (15856743-15856616)
               

               
               1-128, gnl|canFam2|chr6 (28025089-28024832)
               

               
               1-128, gnl|dasNov1|scaffold_2924 (41775-42024)
               

               
               1-128, gnl|echTel1|scaffold_316841 (23784-24040)
               

               
               1-128, gnl|hg17|chr16 (20264925-20265178)
               

               
               1-128, gnl|Hg17|chr16 (20265076-20264949)
               

               
               1-128, gnl|loxAfr1|scaffold_12784 (59236-58979)
               

               
               1-128, gnl|mm7|chr7 (115394584-115394842)
               

               
               1-128, gnl|Mm7|chr7 (115394735-115394608)
               

               
               1-128, gnl|monDom2|scaffold_19 (40738322-40738561)
               

               
               1-128, gnl|oryCun1|scaffold_193299 (173736-174002)
               

               
               1-128, gnl|panTro1|chr18 (20732194-20732447)
               

               
               1-128, gnl|rheMac2|chr20 (19342001-19342254)
               

               
               1-128, gnl|rn3|chr1 (177878090-177878348)
               

               
               1-128, gnl|xenTro1|scaffold_6 (3653968-3653751)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (1.32188)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (1.32188)
               

               
               kid (0.129735)

	1-128, gnl\|bosTau2\|chr25 (15856743-15856616)
	1-128, gnl\|canFam2\|chr6 (28025089-28024832)
	1-128, gnl\|dasNov1\|scaffold_2924 (41775-42024)
	1-128, gnl\|echTel1\|scaffold_316841 (23784-24040)
	1-128, gnl\|hg17\|chr16 (20264925-20265178)
	1-128, gnl\|Hg17\|chr16 (20265076-20264949)
	1-128, gnl\|loxAfr1\|scaffold_12784 (59236-58979)
	1-128, gnl\|mm7\|chr7 (115394584-115394842)
	1-128, gnl\|Mm7\|chr7 (115394735-115394608)
	1-128, gnl\|monDom2\|scaffold_19 (40738322-40738561)
	1-128, gnl\|oryCun1\|scaffold_193299 (173736-174002)
	1-128, gnl\|panTro1\|chr18 (20732194-20732447)
	1-128, gnl\|rheMac2\|chr20 (19342001-19342254)
	1-128, gnl\|rn3\|chr1 (177878090-177878348)
	1-128, gnl\|xenTro1\|scaffold_6 (3653968-3653751)