Ss1.1-MPL-MPL384_4_D05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCGAGTCGGCGCACCCCCGCGGCAGCATGACCACCCTGGGAGGGGCGGCGGCGTCCG CCCACCACCCCATCACCACCTACCCGCCCTACGTCCCCGAATACAGCTCCGGACTCTTCC CGCCCAGCAGCCTGCTGGGGGGCTCCCCCACCGGCTTCGGATGCAAGTCGAGGCCCAAGG CGAGGTCCAGCACAGGCAGGGAGTGCGTCAACTGCGGGGCGACGTCCACCCCACTGTGGC GCCGAGATGGTACCGGTCACTACCTGTGCAACGCCTGCGGGCTCTACCACAAAATGAACG GACAGAATCGACCCCTTATTAAGCCCAAGCGAAGGCTGTCGGCAGCGCGAAGGGCAGGTA CGTCCTGTGCAAACTGTCAAACCACAACTACGACTCTCTGGAGAAGAAATGCCAATGGGG ACCCCGTCTGCAATGCCTGTGGACTCTACTACAAGCTGCACAATATTAACAGACCCCTGA CCATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGT GCAAAAAGGTGCACGACACGCTGGAGGACTTCCCCAAGAGCAGCTCGTTCAACCCCGCCG CCCTCTCCAGACACATGTCCTCTCTCAGCCACATCTCCCCCTTCAGCCACTCCAGCCACA TGCTGACCACGCCCACGCCCATGCACCCGCCGTCCAGCCTCTCCTTCGGACCCCACCACC CTTCCAGTATGGTCACCGCCATGGGCTAGAGTCCCAGCTCGAAGCTCAAACGATCTGCCG CCAGATTTCCCTCCAGCCCCTTCTACGTGCATTTTCGCAGGAGCAGTTATCACGAAGCTG AAACCCCATGGATATAGGCTTTTGAAGGCAGAAAGCGAAGCGACGTTGCCACTTGGACGG AGGAGCCCGCGCGGTGTCTGTGTCCTGCATCCCTGAATTTGGACCCCATTTGTGAATAAG CCATTCAGACTCATCTTCCCTAAGGAACAGGGTCTCTCTAGTGCTGTGAAAAAAAAAAAA ATAATCGCGGAACTTTGCATATAACTTATATTGTAAGAAGGACTGCACATGGGAAGAAGA AGACTTTACTGCATCCGGGTAGCTGTCAGAAAGGCATGAAGGATGCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCGAGTCGGCGCACCCCCGCGGCAGCATGACCACCCTGGGAGGGGCGGCGGCGTCCG CCCACCACCCCATCACCACCTACCCGCCCTACGTCCCCGAATACAGCTCCGGACTCTTCC CGCCCAGCAGCCTGCTGGGGGGCTCCCCCACCGGCTTCGGATGCAAGTCGAGGCCCAAGG CGAGGTCCAGCACAGGCAGGGAGTGCGTCAACTGCGGGGCGACGTCCACCCCACTGTGGC GCCGAGATGGTACCGGTCACTACCTGTGCAACGCCTGCGGGCTCTACCACAAAATGAACG GACAGAATCGACCCCTTATTAAGCCCAAGCGAAGGCTGTCGGCAGCGCGAAGGGCAGGTA CGTCCTGTGCAAACTGTCAAACCACAACTACGACTCTCTGGAGAAGAAATGCCAATGGGG ACCCCGTCTGCAATGCCTGTGGACTCTACTACAAGCTGCACAATATTAACAGACCCCTGA CCATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATGTCTAGCAAATCCAAAAAGT GCAAAAAGGTGCACGACACGCTGGAGGACTTCCCCAAGAGCAGCTCGTTCAACCCCGCCG CCCTCTCCAGACACATGTCCTCTCTCAGCCACATCTCCCCCTTCAGCCACTCCAGCCACA TGCTGACCACGCCCACGCCCATGCACCCGCCGTCCAGCCTCTCCTTCGGACCCCACCACC CTTCCAGTATGGTCACCGCCATGGGCTAGAGTCCCAGCTCGAAGCTCAAACGATCTGCCG CCAGATTTCCCTCCAGCCCCTTCTACGTGCATTTTCGCAGGAGCAGTTATCACGAAGCTG AAACCCCATGGATATAGGCTTTTGAAGGCAGAAAGCGAAGCGACGTTGCCACTTGGACGG AGGAGCCCGCGCGGTGTCTGTGTCCTGCATCCCTGAATTTGGACCCCATTTGTGAATAAG CCATTCAGACTCATCTTCCCTAAGGAACAGGGTCTCTCTAGTGCTGTGAAAAAAAAAAAA ATAATCGCGGAACTTTGCATATAACTTATATTGTAAGAAGGACTGCACATGGGAAGAAGA AGACTTTACTGCATCCGGGTAGCTGTCAGAAAGGCATGAAGGATGCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 544-663, - strand, RNAz p=0.939174 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 544-663, - strand, RNAz p=0.939174 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-200, gnl|bosTau2|chr13 (6810024-6810223) | |
| 1-200, gnl|Hg17|chr10 (8140616-8140815) | |
| 1-200, gnl|Mm7|chr2 (9813741-9813542) | |
| 201-316, gnl|bosTau2|chr13 (35930332-35930447) | |
| 201-316, gnl|canFam2|chr24 (49472116-49472267) | |
| 201-316, gnl|danRer3|chr23 (3085917-3086067) | |
| 201-316, gnl|dasNov1|scaffold_75328 (812-662) | |
| 201-316, gnl|echTel1|scaffold_206635 (733-582) | |
| 201-316, gnl|fr1|chrUn (118163295-118163446) | |
| 201-316, gnl|galGal2|chr20 (7748191-7748339) | |
| 201-316, gnl|hg17|chr20 (60481850-60482001) | |
| 201-316, gnl|Hg17|chr20 (60481991-60481876) | |
| 201-316, gnl|loxAfr1|scaffold_68007 (12916-13067) | |
| 201-316, gnl|mm7|chr2 (180833205-180833356) | |
| 201-316, gnl|Mm7|chr2 (180833346-180833231) | |
| 201-316, gnl|monDom2|scaffold_1 (180467375-180467526) | |
| 201-316, gnl|oryCun1|scaffold_77085 (612-763) | |
| 201-316, gnl|panTro1|chr21 (63489317-63489468) | |
| 201-316, gnl|rheMac2|chr10 (2054524-2054373) | |
| 201-316, gnl|rn3|chr3 (169297173-169297324) | |
| 201-316, gnl|tetNig1|chrUn_random (84349716-84349565) | |
| 201-316, gnl|xenTro1|scaffold_5712 (2707-2556) | |
| 338-464, gnl|bosTau2|chr13 (6819720-6819846) | |
| 338-464, gnl|canFam2|chr2 (30917229-30917079) | |
| 338-464, gnl|danRer3|chr4 (23091737-23091871) | |
| 338-464, gnl|dasNov1|scaffold_19833 (12467-12312) | |
| 338-464, gnl|echTel1|scaffold_309273 (52158-52002) | |
| 338-464, gnl|fr1|chrUn (252768105-252767970) | |
| 338-464, gnl|galGal2|chr1 (5960011-5959853) | |
| 338-464, gnl|hg17|chr10 (8151439-8151594) | |
| 338-464, gnl|Hg17|chr10 (8151441-8151567) | |
| 338-464, gnl|loxAfr1|scaffold_200 (218956-218820) | |
| 338-464, gnl|mm7|chr2 (9802383-9802227) | |
| 338-464, gnl|Mm7|chr2 (9802379-9802253) | |
| 338-464, gnl|monDom2|scaffold_30 (4794206-4794362) | |
| 338-464, gnl|oryCun1|scaffold_202531 (47081-46925) | |
| 338-464, gnl|panTro1|chr8 (8253676-8253831) | |
| 338-464, gnl|rheMac2|chr9 (8270556-8270711) | |
| 338-464, gnl|rn3|chr17 (80017238-80017394) | |
| 338-464, gnl|tetNig1|chrUn_random (29754864-29755002) | |
| 338-464, gnl|xenTro1|scaffold_314 (1282717-1282581) | |
| 465-1127, gnl|bosTau2|chr13 (6824575-6825250) | |
| 465-1127, gnl|Hg17|chr10 (8155708-8156345) | |
| 465-1127, gnl|Mm7|chr2 (9797812-9797149) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-200, gnl|bosTau2|chr13 (6810024-6810223) | |
| 1-200, gnl|Hg17|chr10 (8140616-8140815) | |
| 1-200, gnl|Mm7|chr2 (9813741-9813542) | |
| 201-316, gnl|bosTau2|chr13 (35930332-35930447) | |
| 201-316, gnl|canFam2|chr24 (49472116-49472267) | |
| 201-316, gnl|danRer3|chr23 (3085917-3086067) | |
| 201-316, gnl|dasNov1|scaffold_75328 (812-662) | |
| 201-316, gnl|echTel1|scaffold_206635 (733-582) | |
| 201-316, gnl|fr1|chrUn (118163295-118163446) | |
| 201-316, gnl|galGal2|chr20 (7748191-7748339) | |
| 201-316, gnl|hg17|chr20 (60481850-60482001) | |
| 201-316, gnl|Hg17|chr20 (60481991-60481876) | |
| 201-316, gnl|loxAfr1|scaffold_68007 (12916-13067) | |
| 201-316, gnl|mm7|chr2 (180833205-180833356) | |
| 201-316, gnl|Mm7|chr2 (180833346-180833231) | |
| 201-316, gnl|monDom2|scaffold_1 (180467375-180467526) | |
| 201-316, gnl|oryCun1|scaffold_77085 (612-763) | |
| 201-316, gnl|panTro1|chr21 (63489317-63489468) | |
| 201-316, gnl|rheMac2|chr10 (2054524-2054373) | |
| 201-316, gnl|rn3|chr3 (169297173-169297324) | |
| 201-316, gnl|tetNig1|chrUn_random (84349716-84349565) | |
| 201-316, gnl|xenTro1|scaffold_5712 (2707-2556) | |
| 338-464, gnl|bosTau2|chr13 (6819720-6819846) | |
| 338-464, gnl|canFam2|chr2 (30917229-30917079) | |
| 338-464, gnl|danRer3|chr4 (23091737-23091871) | |
| 338-464, gnl|dasNov1|scaffold_19833 (12467-12312) | |
| 338-464, gnl|echTel1|scaffold_309273 (52158-52002) | |
| 338-464, gnl|fr1|chrUn (252768105-252767970) | |
| 338-464, gnl|galGal2|chr1 (5960011-5959853) | |
| 338-464, gnl|hg17|chr10 (8151439-8151594) | |
| 338-464, gnl|Hg17|chr10 (8151441-8151567) | |
| 338-464, gnl|loxAfr1|scaffold_200 (218956-218820) | |
| 338-464, gnl|mm7|chr2 (9802383-9802227) | |
| 338-464, gnl|Mm7|chr2 (9802379-9802253) | |
| 338-464, gnl|monDom2|scaffold_30 (4794206-4794362) | |
| 338-464, gnl|oryCun1|scaffold_202531 (47081-46925) | |
| 338-464, gnl|panTro1|chr8 (8253676-8253831) | |
| 338-464, gnl|rheMac2|chr9 (8270556-8270711) | |
| 338-464, gnl|rn3|chr17 (80017238-80017394) | |
| 338-464, gnl|tetNig1|chrUn_random (29754864-29755002) | |
| 338-464, gnl|xenTro1|scaffold_314 (1282717-1282581) | |
| 465-1127, gnl|bosTau2|chr13 (6824575-6825250) | |
| 465-1127, gnl|Hg17|chr10 (8155708-8156345) | |
| 465-1127, gnl|Mm7|chr2 (9797812-9797149) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| pla (0.133672) |