Non-Coding RNA Search

Ss1.1-MPL-MPL384_4_L01.5

Sequence:


               
               ATCGGCTTTTTTTATATGGTTCTGATGTACTTGCAAATTCAAATGTGATGTTTTAAAACG
GATTCTGAGTACATAAATACCCCGTGTCCTACTGTCCCCCAACCCCCACTCTGTCTCCAC
CTCCATCCATCCTCACCAAGCAACCCCATGGGACGTGACCTCGAAATGCCGGCCATGCTA
AAGTGTGAGGAGATCGCGCTGGCATCTGCACTCCCGGGAGCCCAAATCCAGGAGTGAAAT
TGCCACTTCTATCCCTTATTTCCTATGGAAACAACGCCTTCCACAGCCCCCAGTACCTGC
TGTCCTCACGGCACTGTTCATCGGGATCAGGATCAGCTGTCGCTGTTATTAGACACCCTG
GTTGGGTTTGCTTACATTGTTGCTGCAGTGAGCATCAGTTTCACTTTGCCGGTGACCACA
TGATTTCCAGTGGCTTCCATCTACAAGCCTGCTGATGACTTTTTTCTAACGTAGTACAAC
AAAGTGACAATTCTGACAGGCTTACCTTGGAAGAGGTATCGTTTTTACTGCCAATTTTTT
TGGATGAAAATGTTTTTATAGATCTTTCCAAATGGTCTGCCAGTCAAGTAGGAATTGCAC
AACTAAGTCAAGGCTGTGTGTTCTCGAAGTTCCCTTCATGAAGCCCGTCCTAGGATGGGT
GAGTCGACCCCTTAGAGGCATCCTGGGAAAGAAAGCAGACTGACCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGGCTTTTTTTATATGGTTCTGATGTACTTGCAAATTCAAATGTGATGTTTTAAAACG
GATTCTGAGTACATAAATACCCCGTGTCCTACTGTCCCCCAACCCCCACTCTGTCTCCAC
CTCCATCCATCCTCACCAAGCAACCCCATGGGACGTGACCTCGAAATGCCGGCCATGCTA
AAGTGTGAGGAGATCGCGCTGGCATCTGCACTCCCGGGAGCCCAAATCCAGGAGTGAAAT
TGCCACTTCTATCCCTTATTTCCTATGGAAACAACGCCTTCCACAGCCCCCAGTACCTGC
TGTCCTCACGGCACTGTTCATCGGGATCAGGATCAGCTGTCGCTGTTATTAGACACCCTG
GTTGGGTTTGCTTACATTGTTGCTGCAGTGAGCATCAGTTTCACTTTGCCGGTGACCACA
TGATTTCCAGTGGCTTCCATCTACAAGCCTGCTGATGACTTTTTTCTAACGTAGTACAAC
AAAGTGACAATTCTGACAGGCTTACCTTGGAAGAGGTATCGTTTTTACTGCCAATTTTTT
TGGATGAAAATGTTTTTATAGATCTTTCCAAATGGTCTGCCAGTCAAGTAGGAATTGCAC
AACTAAGTCAAGGCTGTGTGTTCTCGAAGTTCCCTTCATGAAGCCCGTCCTAGGATGGGT
GAGTCGACCCCTTAGAGGCATCCTGGGAAAGAAAGCAGACTGACCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               478-597, + strand, RNAz p=0.725301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               478-597, + strand, RNAz p=0.725301

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               508-591, + strand, RNAmicro p=0.999856

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               508-591, + strand, RNAmicro p=0.999856

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC029660, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC029660, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-697, gnl|bosTau2|chr3 (58771104-58771770)
               

               
               10-697, gnl|Hg17|chr1 (55245073-55244387)
               

               
               10-697, gnl|Mm7|chr4 (105816783-105817439)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-697, gnl|bosTau2|chr3 (58771104-58771770)
               

               
               10-697, gnl|Hg17|chr1 (55245073-55244387)
               

               
               10-697, gnl|Mm7|chr4 (105816783-105817439)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fbs (0.350693)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               ecc (0.115035)

	10-697, gnl\|bosTau2\|chr3 (58771104-58771770)
	10-697, gnl\|Hg17\|chr1 (55245073-55244387)
	10-697, gnl\|Mm7\|chr4 (105816783-105817439)

	fbs (0.350693)
	mas (0.210305)
	fcc (0.197785)
	fhi (0.169578)
	lnt (0.142308)
	ecc (0.115035)